Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_261 and HP15_260 are separated by 18 nucleotides HP15_260 and HP15_262 are separated by 101 nucleotides HP15_262 and HP15_263 overlap by 1 nucleotides HP15_263 and HP15_264 are separated by 81 nucleotides
HP15_261: HP15_261 - hypothetical protein, at 250,951 to 251,220
_261
HP15_260: HP15_260 - hydrolase, alpha/beta fold family protein, at 251,239 to 252,036
_260
HP15_262: HP15_262 - strictosidine synthase family protein, at 252,138 to 253,223
_262
HP15_263: HP15_263 - thioesterase superfamily protein, at 253,223 to 253,684
_263
HP15_264: HP15_264 - NADPH:quinone reductase and related Zn-dependent oxidoreductase, at 253,766 to 254,749
_264
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 251.187 kb on + strand, within HP15_261 at 251.195 kb on - strand at 251.210 kb on + strand at 251.235 kb on + strand at 251.311 kb on + strand at 251.322 kb on + strand, within HP15_260 at 251.575 kb on - strand, within HP15_260 at 251.605 kb on + strand, within HP15_260 at 251.624 kb on + strand, within HP15_260 at 251.629 kb on + strand, within HP15_260 at 251.637 kb on - strand, within HP15_260 at 251.670 kb on + strand, within HP15_260 at 251.832 kb on + strand, within HP15_260 at 251.832 kb on + strand, within HP15_260 at 251.941 kb on - strand, within HP15_260 at 251.965 kb on - strand at 251.993 kb on - strand at 252.044 kb on - strand at 252.044 kb on - strand at 252.085 kb on - strand at 252.179 kb on + strand at 252.187 kb on - strand at 252.319 kb on + strand, within HP15_262 at 252.361 kb on - strand, within HP15_262 at 252.469 kb on + strand, within HP15_262 at 252.519 kb on + strand, within HP15_262 at 252.681 kb on - strand, within HP15_262 at 252.793 kb on - strand, within HP15_262 at 252.909 kb on + strand, within HP15_262 at 252.958 kb on - strand, within HP15_262 at 253.007 kb on - strand, within HP15_262 at 253.068 kb on + strand, within HP15_262 at 253.076 kb on - strand, within HP15_262 at 253.140 kb on + strand at 253.280 kb on - strand, within HP15_263 at 253.526 kb on - strand, within HP15_263 at 253.550 kb on + strand, within HP15_263 at 253.625 kb on + strand, within HP15_263 at 253.676 kb on + strand at 253.705 kb on - strand at 253.819 kb on - strand at 253.908 kb on + strand, within HP15_264 at 253.908 kb on + strand, within HP15_264 at 253.914 kb on + strand, within HP15_264 at 253.922 kb on - strand, within HP15_264 at 254.031 kb on + strand, within HP15_264 at 254.039 kb on - strand, within HP15_264 at 254.054 kb on - strand, within HP15_264 at 254.111 kb on - strand, within HP15_264 at 254.188 kb on - strand, within HP15_264
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 251,187 + HP15_261 0.87 +1.1 251,195 - -1.0 251,210 + +0.6 251,235 + +1.5 251,311 + +3.7 251,322 + HP15_260 0.10 +4.1 251,575 - HP15_260 0.42 -0.3 251,605 + HP15_260 0.46 +2.9 251,624 + HP15_260 0.48 +3.9 251,629 + HP15_260 0.49 +3.3 251,637 - HP15_260 0.50 +0.2 251,670 + HP15_260 0.54 +3.4 251,832 + HP15_260 0.74 +3.2 251,832 + HP15_260 0.74 +4.0 251,941 - HP15_260 0.88 -0.7 251,965 - +1.3 251,993 - +0.1 252,044 - -1.0 252,044 - -0.8 252,085 - -0.7 252,179 + -2.1 252,187 - -2.5 252,319 + HP15_262 0.17 +1.8 252,361 - HP15_262 0.21 -2.7 252,469 + HP15_262 0.30 -1.5 252,519 + HP15_262 0.35 -1.7 252,681 - HP15_262 0.50 -1.7 252,793 - HP15_262 0.60 -1.8 252,909 + HP15_262 0.71 -2.1 252,958 - HP15_262 0.76 -0.5 253,007 - HP15_262 0.80 -1.7 253,068 + HP15_262 0.86 -3.0 253,076 - HP15_262 0.86 -2.1 253,140 + -1.1 253,280 - HP15_263 0.12 -0.7 253,526 - HP15_263 0.66 -0.2 253,550 + HP15_263 0.71 -0.6 253,625 + HP15_263 0.87 +0.7 253,676 + +1.3 253,705 - -0.6 253,819 - -0.3 253,908 + HP15_264 0.14 +1.0 253,908 + HP15_264 0.14 -0.3 253,914 + HP15_264 0.15 -1.8 253,922 - HP15_264 0.16 -0.0 254,031 + HP15_264 0.27 +1.2 254,039 - HP15_264 0.28 +0.2 254,054 - HP15_264 0.29 -0.4 254,111 - HP15_264 0.35 -0.5 254,188 - HP15_264 0.43 -1.3
Or see this region's nucleotide sequence