Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2671

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2670 and Psest_2671 are separated by 125 nucleotidesPsest_2671 and Psest_2672 are separated by 72 nucleotides Psest_2670: Psest_2670 - Uncharacterized conserved protein, at 2,857,825 to 2,858,646 _2670 Psest_2671: Psest_2671 - Transcriptional regulator, at 2,858,772 to 2,859,665 _2671 Psest_2672: Psest_2672 - Predicted membrane protein, at 2,859,738 to 2,861,063 _2672 Position (kb) 2858 2859 2860Strain fitness (log2 ratio) -2 -1 0 1 2at 2858.042 kb on - strand, within Psest_2670at 2858.042 kb on - strand, within Psest_2670at 2858.054 kb on + strand, within Psest_2670at 2858.075 kb on + strand, within Psest_2670at 2858.075 kb on + strand, within Psest_2670at 2858.075 kb on + strand, within Psest_2670at 2858.076 kb on - strand, within Psest_2670at 2858.076 kb on - strand, within Psest_2670at 2858.637 kb on + strandat 2858.638 kb on - strandat 2858.638 kb on - strandat 2858.638 kb on - strandat 2859.053 kb on + strand, within Psest_2671at 2859.054 kb on - strand, within Psest_2671at 2859.343 kb on - strand, within Psest_2671at 2859.401 kb on - strand, within Psest_2671at 2859.547 kb on + strand, within Psest_2671at 2859.548 kb on - strand, within Psest_2671at 2859.618 kb on - strandat 2859.771 kb on + strandat 2859.771 kb on + strandat 2859.879 kb on + strand, within Psest_2672at 2859.880 kb on - strand, within Psest_2672at 2859.880 kb on - strand, within Psest_2672at 2859.880 kb on - strand, within Psest_2672at 2859.880 kb on - strand, within Psest_2672at 2859.880 kb on - strand, within Psest_2672at 2859.880 kb on - strand, within Psest_2672at 2859.880 kb on - strand, within Psest_2672at 2859.932 kb on + strand, within Psest_2672at 2860.086 kb on + strand, within Psest_2672at 2860.087 kb on - strand, within Psest_2672at 2860.284 kb on + strand, within Psest_2672at 2860.285 kb on - strand, within Psest_2672at 2860.285 kb on - strand, within Psest_2672at 2860.285 kb on - strand, within Psest_2672at 2860.285 kb on - strand, within Psest_2672at 2860.406 kb on - strand, within Psest_2672at 2860.560 kb on + strand, within Psest_2672at 2860.560 kb on + strand, within Psest_2672at 2860.560 kb on + strand, within Psest_2672at 2860.560 kb on + strand, within Psest_2672at 2860.561 kb on - strand, within Psest_2672at 2860.561 kb on - strand, within Psest_2672at 2860.561 kb on - strand, within Psest_2672at 2860.561 kb on - strand, within Psest_2672at 2860.561 kb on - strand, within Psest_2672at 2860.561 kb on - strand, within Psest_2672at 2860.561 kb on - strand, within Psest_2672at 2860.561 kb on - strand, within Psest_2672at 2860.561 kb on - strand, within Psest_2672at 2860.573 kb on - strand, within Psest_2672

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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2,858,042 - Psest_2670 0.26 +1.0
2,858,042 - Psest_2670 0.26 +1.0
2,858,054 + Psest_2670 0.28 +1.0
2,858,075 + Psest_2670 0.30 +0.2
2,858,075 + Psest_2670 0.30 +0.7
2,858,075 + Psest_2670 0.30 +0.2
2,858,076 - Psest_2670 0.31 -1.3
2,858,076 - Psest_2670 0.31 +1.0
2,858,637 + -2.5
2,858,638 - +1.3
2,858,638 - -0.6
2,858,638 - -0.8
2,859,053 + Psest_2671 0.31 -0.0
2,859,054 - Psest_2671 0.32 +0.2
2,859,343 - Psest_2671 0.64 -0.0
2,859,401 - Psest_2671 0.70 -1.0
2,859,547 + Psest_2671 0.87 -0.9
2,859,548 - Psest_2671 0.87 -1.0
2,859,618 - -0.4
2,859,771 + +1.1
2,859,771 + +0.9
2,859,879 + Psest_2672 0.11 -0.5
2,859,880 - Psest_2672 0.11 +0.6
2,859,880 - Psest_2672 0.11 -1.0
2,859,880 - Psest_2672 0.11 -0.6
2,859,880 - Psest_2672 0.11 -2.3
2,859,880 - Psest_2672 0.11 -1.3
2,859,880 - Psest_2672 0.11 -0.7
2,859,880 - Psest_2672 0.11 +0.1
2,859,932 + Psest_2672 0.15 -0.0
2,860,086 + Psest_2672 0.26 +0.5
2,860,087 - Psest_2672 0.26 -0.4
2,860,284 + Psest_2672 0.41 -0.6
2,860,285 - Psest_2672 0.41 -0.2
2,860,285 - Psest_2672 0.41 -0.7
2,860,285 - Psest_2672 0.41 +2.1
2,860,285 - Psest_2672 0.41 -1.3
2,860,406 - Psest_2672 0.50 +1.6
2,860,560 + Psest_2672 0.62 -0.8
2,860,560 + Psest_2672 0.62 +0.3
2,860,560 + Psest_2672 0.62 -1.5
2,860,560 + Psest_2672 0.62 +0.8
2,860,561 - Psest_2672 0.62 -0.2
2,860,561 - Psest_2672 0.62 +2.0
2,860,561 - Psest_2672 0.62 +0.2
2,860,561 - Psest_2672 0.62 -0.2
2,860,561 - Psest_2672 0.62 -0.1
2,860,561 - Psest_2672 0.62 -0.3
2,860,561 - Psest_2672 0.62 +0.2
2,860,561 - Psest_2672 0.62 +1.1
2,860,561 - Psest_2672 0.62 -1.0
2,860,573 - Psest_2672 0.63 +0.4

Or see this region's nucleotide sequence