Strain Fitness in Marinobacter adhaerens HP15 around HP15_2554

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2553 and HP15_2554 are separated by 154 nucleotidesHP15_2554 and HP15_2555 are separated by 66 nucleotidesHP15_2555 and HP15_2556 are separated by 38 nucleotides HP15_2553: HP15_2553 - oxidoreductase, FAD-binding protein, at 2,699,097 to 2,700,536 _2553 HP15_2554: HP15_2554 - D-3-phosphoglycerate dehydrogenase-like protein, at 2,700,691 to 2,701,920 _2554 HP15_2555: HP15_2555 - OmpA/MotB domain protein, at 2,701,987 to 2,702,643 _2555 HP15_2556: HP15_2556 - lysophospholipase, at 2,702,682 to 2,703,689 _2556 Position (kb) 2700 2701 2702Strain fitness (log2 ratio) -2 -1 0 1at 2700.523 kb on - strandat 2702.058 kb on + strand, within HP15_2555at 2702.103 kb on + strand, within HP15_2555at 2702.200 kb on - strand, within HP15_2555at 2702.224 kb on + strand, within HP15_2555at 2702.269 kb on - strand, within HP15_2555at 2702.450 kb on + strand, within HP15_2555at 2702.570 kb on + strand, within HP15_2555at 2702.577 kb on - strand, within HP15_2555at 2702.578 kb on - strandat 2702.601 kb on + strandat 2702.653 kb on - strandat 2702.862 kb on - strand, within HP15_2556at 2702.862 kb on - strand, within HP15_2556at 2702.871 kb on - strand, within HP15_2556at 2702.908 kb on + strand, within HP15_2556

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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2,700,523 - -0.5
2,702,058 + HP15_2555 0.11 -2.0
2,702,103 + HP15_2555 0.18 -0.1
2,702,200 - HP15_2555 0.32 -2.0
2,702,224 + HP15_2555 0.36 +0.6
2,702,269 - HP15_2555 0.43 +0.9
2,702,450 + HP15_2555 0.70 -0.3
2,702,570 + HP15_2555 0.89 +0.9
2,702,577 - HP15_2555 0.90 -1.0
2,702,578 - +0.1
2,702,601 + +0.3
2,702,653 - +0.7
2,702,862 - HP15_2556 0.18 -0.9
2,702,862 - HP15_2556 0.18 -0.5
2,702,871 - HP15_2556 0.19 +0.5
2,702,908 + HP15_2556 0.22 -1.5

Or see this region's nucleotide sequence