Strain Fitness in Marinobacter adhaerens HP15 around HP15_253

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_251 and HP15_252 overlap by 7 nucleotidesHP15_252 and HP15_253 are separated by 183 nucleotidesHP15_253 and HP15_254 are separated by 12 nucleotidesHP15_254 and HP15_255 are separated by 260 nucleotides HP15_251: HP15_251 - diguanylate cyclase, at 239,531 to 241,024 _251 HP15_252: HP15_252 - conserved hypothetical protein, at 241,018 to 241,257 _252 HP15_253: HP15_253 - extracellular solute-binding protein, family 3, at 241,441 to 244,149 _253 HP15_254: HP15_254 - conserved hypothetical protein, at 244,162 to 244,485 _254 HP15_255: HP15_255 - conserved hypothetical protein, at 244,746 to 245,351 _255 Position (kb) 241 242 243 244 245Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 240.444 kb on - strand, within HP15_251at 240.444 kb on - strand, within HP15_251at 240.451 kb on + strand, within HP15_251at 240.472 kb on + strand, within HP15_251at 240.485 kb on - strand, within HP15_251at 240.489 kb on + strand, within HP15_251at 240.509 kb on + strand, within HP15_251at 240.544 kb on - strand, within HP15_251at 240.553 kb on - strand, within HP15_251at 240.559 kb on + strand, within HP15_251at 240.610 kb on - strand, within HP15_251at 240.629 kb on + strand, within HP15_251at 240.642 kb on - strand, within HP15_251at 240.672 kb on - strand, within HP15_251at 240.921 kb on + strandat 240.967 kb on + strandat 240.981 kb on + strandat 240.991 kb on + strandat 241.000 kb on - strandat 241.016 kb on - strandat 241.120 kb on - strand, within HP15_252at 241.120 kb on - strand, within HP15_252at 241.333 kb on + strandat 241.392 kb on + strandat 241.454 kb on - strandat 241.559 kb on + strandat 241.630 kb on - strandat 241.644 kb on + strandat 241.672 kb on + strandat 241.680 kb on - strandat 241.695 kb on - strandat 241.877 kb on - strand, within HP15_253at 242.174 kb on + strand, within HP15_253at 242.194 kb on + strandat 242.194 kb on + strand, within HP15_253at 242.212 kb on - strand, within HP15_253at 242.418 kb on + strand, within HP15_253at 242.624 kb on - strand, within HP15_253at 242.657 kb on - strand, within HP15_253at 242.762 kb on + strand, within HP15_253at 242.784 kb on + strand, within HP15_253at 242.789 kb on + strand, within HP15_253at 242.789 kb on + strand, within HP15_253at 242.789 kb on + strand, within HP15_253at 242.789 kb on + strand, within HP15_253at 242.789 kb on + strand, within HP15_253at 242.797 kb on - strand, within HP15_253at 242.797 kb on - strand, within HP15_253at 242.797 kb on - strand, within HP15_253at 242.797 kb on - strand, within HP15_253at 242.826 kb on - strand, within HP15_253at 242.826 kb on - strand, within HP15_253at 242.904 kb on - strand, within HP15_253at 243.055 kb on + strand, within HP15_253at 243.055 kb on + strand, within HP15_253at 243.093 kb on + strand, within HP15_253at 243.199 kb on - strand, within HP15_253at 243.263 kb on + strand, within HP15_253at 243.271 kb on - strand, within HP15_253at 243.386 kb on + strand, within HP15_253at 243.388 kb on - strand, within HP15_253at 243.394 kb on - strand, within HP15_253at 243.398 kb on + strand, within HP15_253at 243.519 kb on - strand, within HP15_253at 243.521 kb on + strand, within HP15_253at 243.810 kb on + strand, within HP15_253at 243.813 kb on - strand, within HP15_253at 243.823 kb on - strand, within HP15_253at 243.956 kb on + strandat 243.956 kb on - strandat 244.040 kb on + strandat 244.110 kb on + strandat 244.111 kb on + strandat 244.111 kb on + strandat 244.111 kb on + strandat 244.199 kb on + strand, within HP15_254at 244.230 kb on - strand, within HP15_254at 244.270 kb on - strand, within HP15_254at 244.286 kb on + strand, within HP15_254at 244.286 kb on + strand, within HP15_254at 244.293 kb on - strand, within HP15_254at 244.294 kb on - strand, within HP15_254at 244.296 kb on + strand, within HP15_254at 244.366 kb on + strand, within HP15_254at 244.403 kb on + strand, within HP15_254at 244.715 kb on - strandat 244.779 kb on + strandat 244.823 kb on + strand, within HP15_255at 244.823 kb on + strand, within HP15_255at 244.831 kb on - strand, within HP15_255at 245.030 kb on - strand, within HP15_255at 245.030 kb on - strand, within HP15_255

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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240,444 - HP15_251 0.61 +0.6
240,444 - HP15_251 0.61 +2.4
240,451 + HP15_251 0.62 +0.5
240,472 + HP15_251 0.63 +0.8
240,485 - HP15_251 0.64 +2.6
240,489 + HP15_251 0.64 +0.2
240,509 + HP15_251 0.65 +0.1
240,544 - HP15_251 0.68 -0.4
240,553 - HP15_251 0.68 +1.1
240,559 + HP15_251 0.69 +3.6
240,610 - HP15_251 0.72 +0.7
240,629 + HP15_251 0.73 +1.1
240,642 - HP15_251 0.74 +1.7
240,672 - HP15_251 0.76 +1.5
240,921 + +2.4
240,967 + +0.7
240,981 + +0.8
240,991 + +1.2
241,000 - -0.1
241,016 - +2.0
241,120 - HP15_252 0.42 -2.4
241,120 - HP15_252 0.42 +0.1
241,333 + -0.5
241,392 + -0.7
241,454 - -0.2
241,559 + -2.0
241,630 - -0.2
241,644 + -2.0
241,672 + -0.5
241,680 - -2.5
241,695 - -2.3
241,877 - HP15_253 0.16 -0.1
242,174 + HP15_253 0.27 -2.6
242,194 + +1.8
242,194 + HP15_253 0.28 -2.6
242,212 - HP15_253 0.28 -0.5
242,418 + HP15_253 0.36 -1.0
242,624 - HP15_253 0.44 -1.2
242,657 - HP15_253 0.45 -2.5
242,762 + HP15_253 0.49 -0.6
242,784 + HP15_253 0.50 -1.4
242,789 + HP15_253 0.50 -2.3
242,789 + HP15_253 0.50 +0.4
242,789 + HP15_253 0.50 -1.8
242,789 + HP15_253 0.50 -4.3
242,789 + HP15_253 0.50 -1.5
242,797 - HP15_253 0.50 -1.4
242,797 - HP15_253 0.50 +0.2
242,797 - HP15_253 0.50 -0.6
242,797 - HP15_253 0.50 -2.0
242,826 - HP15_253 0.51 -1.6
242,826 - HP15_253 0.51 -2.3
242,904 - HP15_253 0.54 -1.9
243,055 + HP15_253 0.60 +1.0
243,055 + HP15_253 0.60 -1.0
243,093 + HP15_253 0.61 -1.2
243,199 - HP15_253 0.65 -1.4
243,263 + HP15_253 0.67 -1.8
243,271 - HP15_253 0.68 -0.4
243,386 + HP15_253 0.72 +0.6
243,388 - HP15_253 0.72 +0.4
243,394 - HP15_253 0.72 -1.0
243,398 + HP15_253 0.72 -1.4
243,519 - HP15_253 0.77 +0.2
243,521 + HP15_253 0.77 -0.8
243,810 + HP15_253 0.87 -1.2
243,813 - HP15_253 0.88 -0.2
243,823 - HP15_253 0.88 -2.3
243,956 + -0.0
243,956 - -1.6
244,040 + -2.3
244,110 + -0.5
244,111 + -0.4
244,111 + -1.5
244,111 + +0.5
244,199 + HP15_254 0.11 +1.1
244,230 - HP15_254 0.21 +0.9
244,270 - HP15_254 0.33 +1.4
244,286 + HP15_254 0.38 -0.2
244,286 + HP15_254 0.38 +0.3
244,293 - HP15_254 0.40 +1.3
244,294 - HP15_254 0.41 +0.2
244,296 + HP15_254 0.41 +0.0
244,366 + HP15_254 0.63 +1.0
244,403 + HP15_254 0.74 +1.7
244,715 - -0.2
244,779 + +0.3
244,823 + HP15_255 0.13 +1.0
244,823 + HP15_255 0.13 +1.9
244,831 - HP15_255 0.14 +2.1
245,030 - HP15_255 0.47 -0.2
245,030 - HP15_255 0.47 +1.0

Or see this region's nucleotide sequence