Strain Fitness in Marinobacter adhaerens HP15 around HP15_248

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_247 and HP15_248 are separated by 14 nucleotidesHP15_248 and HP15_249 are separated by 16 nucleotidesHP15_249 and HP15_250 are separated by 28 nucleotides HP15_247: HP15_247 - diaminopimelate decarboxylase, at 235,559 to 236,809 _247 HP15_248: HP15_248 - diaminopimelate epimerase, at 236,824 to 237,738 _248 HP15_249: HP15_249 - protein containing DUF484, at 237,755 to 238,501 _249 HP15_250: HP15_250 - site-specific tyrosine recombinase XerC, at 238,530 to 239,462 _250 Position (kb) 236 237 238Strain fitness (log2 ratio) -2 -1 0 1 2 3at 237.667 kb on + strandat 237.677 kb on - strandat 237.748 kb on - strandat 237.751 kb on + strandat 237.875 kb on - strand, within HP15_249at 237.935 kb on - strand, within HP15_249at 237.942 kb on + strand, within HP15_249at 238.020 kb on - strand, within HP15_249at 238.153 kb on + strand, within HP15_249at 238.177 kb on - strand, within HP15_249at 238.222 kb on + strand, within HP15_249at 238.381 kb on + strand, within HP15_249at 238.520 kb on - strandat 238.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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237,667 + -1.3
237,677 - +0.7
237,748 - +2.0
237,751 + +0.9
237,875 - HP15_249 0.16 -0.4
237,935 - HP15_249 0.24 +1.2
237,942 + HP15_249 0.25 +0.2
238,020 - HP15_249 0.35 +3.0
238,153 + HP15_249 0.53 -1.8
238,177 - HP15_249 0.56 +0.0
238,222 + HP15_249 0.63 +0.8
238,381 + HP15_249 0.84 +0.5
238,520 - -0.1
238,530 - +0.9

Or see this region's nucleotide sequence