Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2385 and HP15_2386 are separated by 28 nucleotides HP15_2386 and HP15_2387 are separated by 8 nucleotides HP15_2387 and HP15_2388 are separated by 1 nucleotides HP15_2388 and HP15_2389 are separated by 482 nucleotides
HP15_2385: HP15_2385 - UDP-glucose 6-dehydrogenase, at 2,515,051 to 2,516,223
_2385
HP15_2386: HP15_2386 - UDP-glucose 4-epimerase, at 2,516,252 to 2,517,208
_2386
HP15_2387: HP15_2387 - dTDP-glucose 4-6-dehydratase, at 2,517,217 to 2,518,164
_2387
HP15_2388: HP15_2388 - glycosyl transferase-like protein, at 2,518,166 to 2,518,474
_2388
HP15_2389: HP15_2389 - capsule polysaccharide biosynthetic protein, at 2,518,957 to 2,520,489
_2389
Position (kb)
2517
2518
2519 Strain fitness (log2 ratio)
-1
0
1
2 at 2516.402 kb on + strand, within HP15_2386 at 2516.402 kb on + strand, within HP15_2386 at 2516.402 kb on + strand, within HP15_2386 at 2516.410 kb on - strand, within HP15_2386 at 2516.460 kb on + strand, within HP15_2386 at 2516.461 kb on + strand, within HP15_2386 at 2516.493 kb on + strand, within HP15_2386 at 2516.510 kb on - strand, within HP15_2386 at 2516.605 kb on + strand, within HP15_2386 at 2516.613 kb on - strand, within HP15_2386 at 2516.619 kb on + strand, within HP15_2386 at 2516.736 kb on - strand, within HP15_2386 at 2516.761 kb on + strand, within HP15_2386 at 2516.793 kb on - strand, within HP15_2386 at 2516.839 kb on - strand, within HP15_2386 at 2516.891 kb on + strand, within HP15_2386 at 2517.067 kb on + strand, within HP15_2386 at 2517.081 kb on + strand, within HP15_2386 at 2517.082 kb on - strand, within HP15_2386 at 2517.157 kb on + strand at 2518.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 2,516,402 + HP15_2386 0.16 +0.1 2,516,402 + HP15_2386 0.16 -0.9 2,516,402 + HP15_2386 0.16 +2.1 2,516,410 - HP15_2386 0.17 +0.1 2,516,460 + HP15_2386 0.22 -0.4 2,516,461 + HP15_2386 0.22 +0.7 2,516,493 + HP15_2386 0.25 +1.1 2,516,510 - HP15_2386 0.27 -0.0 2,516,605 + HP15_2386 0.37 -1.0 2,516,613 - HP15_2386 0.38 +0.6 2,516,619 + HP15_2386 0.38 +0.3 2,516,736 - HP15_2386 0.51 +0.4 2,516,761 + HP15_2386 0.53 -0.5 2,516,793 - HP15_2386 0.57 +0.8 2,516,839 - HP15_2386 0.61 +1.5 2,516,891 + HP15_2386 0.67 -1.7 2,517,067 + HP15_2386 0.85 -1.2 2,517,081 + HP15_2386 0.87 -0.2 2,517,082 - HP15_2386 0.87 -0.7 2,517,157 + -0.3 2,518,968 - -0.2
Or see this region's nucleotide sequence