Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_223 and HP15_224 are separated by 124 nucleotides HP15_224 and HP15_225 overlap by 4 nucleotides HP15_225 and HP15_226 are separated by 46 nucleotides
HP15_223: HP15_223 - peptidylprolyl isomerase, FKBP-type, at 209,346 to 210,062
_223
HP15_224: HP15_224 - conserved hypothetical protein, secreted, at 210,187 to 210,573
_224
HP15_225: HP15_225 - conserved hypothetical protein, at 210,570 to 211,127
_225
HP15_226: HP15_226 - ABC transporter ATP-binding protein-like protein, at 211,174 to 213,117
_226
Position (kb) 210
211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 209.789 kb on + strand, within HP15_223 at 210.005 kb on + strand at 210.090 kb on + strand at 210.098 kb on - strand at 210.107 kb on + strand at 210.150 kb on - strand at 210.238 kb on + strand, within HP15_224 at 210.345 kb on + strand, within HP15_224 at 210.345 kb on + strand, within HP15_224 at 210.350 kb on + strand, within HP15_224 at 210.464 kb on - strand, within HP15_224 at 210.486 kb on + strand, within HP15_224 at 210.494 kb on - strand, within HP15_224 at 210.494 kb on - strand, within HP15_224 at 210.650 kb on - strand, within HP15_225 at 210.727 kb on - strand, within HP15_225 at 210.758 kb on - strand, within HP15_225 at 210.817 kb on - strand, within HP15_225 at 210.821 kb on + strand, within HP15_225 at 210.831 kb on + strand, within HP15_225 at 210.866 kb on + strand, within HP15_225 at 210.895 kb on - strand, within HP15_225 at 210.918 kb on + strand, within HP15_225 at 210.940 kb on - strand, within HP15_225 at 210.999 kb on + strand, within HP15_225 at 210.999 kb on + strand, within HP15_225 at 210.999 kb on + strand, within HP15_225 at 211.026 kb on + strand, within HP15_225 at 211.048 kb on + strand, within HP15_225 at 211.135 kb on + strand at 211.143 kb on + strand at 211.251 kb on - strand at 211.323 kb on + strand at 211.328 kb on + strand at 211.328 kb on + strand at 211.397 kb on + strand, within HP15_226 at 211.528 kb on - strand, within HP15_226 at 211.567 kb on + strand, within HP15_226 at 211.651 kb on - strand, within HP15_226 at 211.657 kb on - strand, within HP15_226 at 211.709 kb on + strand, within HP15_226 at 211.841 kb on + strand, within HP15_226 at 211.879 kb on + strand, within HP15_226 at 211.968 kb on + strand, within HP15_226 at 211.968 kb on + strand, within HP15_226 at 211.976 kb on - strand, within HP15_226 at 211.982 kb on - strand, within HP15_226 at 211.988 kb on - strand, within HP15_226 at 211.999 kb on + strand, within HP15_226 at 212.025 kb on - strand, within HP15_226 at 212.046 kb on + strand, within HP15_226 at 212.049 kb on - strand, within HP15_226 at 212.086 kb on + strand, within HP15_226 at 212.093 kb on - strand, within HP15_226
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 209,789 + HP15_223 0.62 -2.2 210,005 + -3.0 210,090 + -3.2 210,098 - -1.6 210,107 + -2.5 210,150 - -1.9 210,238 + HP15_224 0.13 -1.7 210,345 + HP15_224 0.41 -1.5 210,345 + HP15_224 0.41 -1.7 210,350 + HP15_224 0.42 -1.8 210,464 - HP15_224 0.72 -1.6 210,486 + HP15_224 0.77 +0.3 210,494 - HP15_224 0.79 -0.8 210,494 - HP15_224 0.79 -1.3 210,650 - HP15_225 0.14 -0.4 210,727 - HP15_225 0.28 -0.2 210,758 - HP15_225 0.34 +0.5 210,817 - HP15_225 0.44 +0.1 210,821 + HP15_225 0.45 -2.6 210,831 + HP15_225 0.47 -1.6 210,866 + HP15_225 0.53 -1.7 210,895 - HP15_225 0.58 -0.8 210,918 + HP15_225 0.62 -1.7 210,940 - HP15_225 0.66 -1.1 210,999 + HP15_225 0.77 -1.1 210,999 + HP15_225 0.77 -0.9 210,999 + HP15_225 0.77 -0.1 211,026 + HP15_225 0.82 -0.9 211,048 + HP15_225 0.86 -1.6 211,135 + -2.9 211,143 + -1.5 211,251 - +1.5 211,323 + +0.1 211,328 + +1.8 211,328 + -1.0 211,397 + HP15_226 0.11 +0.2 211,528 - HP15_226 0.18 +0.0 211,567 + HP15_226 0.20 +0.4 211,651 - HP15_226 0.25 +1.0 211,657 - HP15_226 0.25 +0.8 211,709 + HP15_226 0.28 +0.4 211,841 + HP15_226 0.34 -0.2 211,879 + HP15_226 0.36 +0.8 211,968 + HP15_226 0.41 +1.2 211,968 + HP15_226 0.41 +0.3 211,976 - HP15_226 0.41 +1.5 211,982 - HP15_226 0.42 +1.5 211,988 - HP15_226 0.42 +0.5 211,999 + HP15_226 0.42 +0.8 212,025 - HP15_226 0.44 +1.1 212,046 + HP15_226 0.45 -1.3 212,049 - HP15_226 0.45 +0.5 212,086 + HP15_226 0.47 +0.3 212,093 - HP15_226 0.47 +0.6
Or see this region's nucleotide sequence