Strain Fitness in Marinobacter adhaerens HP15 around HP15_2096

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2095 and HP15_2096 are separated by 11 nucleotidesHP15_2096 and HP15_2097 are separated by 95 nucleotides HP15_2095: HP15_2095 - aspartate aminotransferase, at 2,194,367 to 2,195,581 _2095 HP15_2096: HP15_2096 - conserved hypothetical protein, at 2,195,593 to 2,196,063 _2096 HP15_2097: HP15_2097 - protease HtpX-like protein, at 2,196,159 to 2,197,040 _2097 Position (kb) 2195 2196 2197Strain fitness (log2 ratio) -3 -2 -1 0 1at 2194.738 kb on - strand, within HP15_2095at 2194.793 kb on + strand, within HP15_2095at 2194.920 kb on + strand, within HP15_2095at 2194.971 kb on + strand, within HP15_2095at 2195.018 kb on + strand, within HP15_2095at 2195.088 kb on - strand, within HP15_2095at 2195.122 kb on - strand, within HP15_2095at 2195.392 kb on + strand, within HP15_2095at 2195.728 kb on - strand, within HP15_2096at 2195.728 kb on - strand, within HP15_2096at 2195.821 kb on + strand, within HP15_2096at 2195.829 kb on - strand, within HP15_2096at 2195.829 kb on - strand, within HP15_2096at 2195.934 kb on + strand, within HP15_2096at 2195.955 kb on + strand, within HP15_2096at 2196.109 kb on + strandat 2196.211 kb on + strandat 2196.264 kb on - strand, within HP15_2097at 2196.643 kb on - strand, within HP15_2097at 2196.768 kb on + strand, within HP15_2097at 2196.776 kb on - strand, within HP15_2097at 2196.872 kb on - strand, within HP15_2097at 2196.872 kb on - strand, within HP15_2097at 2196.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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2,194,738 - HP15_2095 0.31 +0.7
2,194,793 + HP15_2095 0.35 -3.5
2,194,920 + HP15_2095 0.46 +0.1
2,194,971 + HP15_2095 0.50 -3.0
2,195,018 + HP15_2095 0.54 +0.5
2,195,088 - HP15_2095 0.59 +0.2
2,195,122 - HP15_2095 0.62 +0.2
2,195,392 + HP15_2095 0.84 -0.7
2,195,728 - HP15_2096 0.29 +0.2
2,195,728 - HP15_2096 0.29 +0.0
2,195,821 + HP15_2096 0.48 -1.0
2,195,829 - HP15_2096 0.50 -0.7
2,195,829 - HP15_2096 0.50 -0.0
2,195,934 + HP15_2096 0.72 -0.5
2,195,955 + HP15_2096 0.77 -1.5
2,196,109 + -1.6
2,196,211 + +0.2
2,196,264 - HP15_2097 0.12 +1.1
2,196,643 - HP15_2097 0.55 -1.5
2,196,768 + HP15_2097 0.69 -1.8
2,196,776 - HP15_2097 0.70 +0.3
2,196,872 - HP15_2097 0.81 +0.7
2,196,872 - HP15_2097 0.81 +0.5
2,196,988 - -0.0

Or see this region's nucleotide sequence