Strain Fitness in Marinobacter adhaerens HP15 around HP15_2054

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2053 and HP15_2054 are separated by 316 nucleotidesHP15_2054 and HP15_2055 are separated by 92 nucleotides HP15_2053: HP15_2053 - PrpE protein, at 2,153,144 to 2,155,018 _2053 HP15_2054: HP15_2054 - cold shock, CspA, at 2,155,335 to 2,155,544 _2054 HP15_2055: HP15_2055 - 2-isopropylmalate synthase, at 2,155,637 to 2,157,331 _2055 Position (kb) 2155 2156Strain fitness (log2 ratio) -2 -1 0 1at 2154.394 kb on + strand, within HP15_2053at 2154.404 kb on - strand, within HP15_2053at 2154.404 kb on - strand, within HP15_2053at 2154.825 kb on - strand, within HP15_2053at 2154.887 kb on + strandat 2154.895 kb on - strandat 2154.974 kb on - strandat 2155.366 kb on + strand, within HP15_2054at 2155.366 kb on + strand, within HP15_2054at 2155.384 kb on - strand, within HP15_2054at 2155.466 kb on + strand, within HP15_2054at 2155.568 kb on - strandat 2155.700 kb on - strandat 2155.704 kb on + strandat 2155.712 kb on - strandat 2155.786 kb on + strandat 2155.799 kb on - strandat 2155.818 kb on + strand, within HP15_2055at 2155.903 kb on - strand, within HP15_2055at 2155.920 kb on - strand, within HP15_2055at 2156.107 kb on - strand, within HP15_2055at 2156.109 kb on + strand, within HP15_2055at 2156.117 kb on - strand, within HP15_2055at 2156.125 kb on + strand, within HP15_2055at 2156.162 kb on + strand, within HP15_2055at 2156.186 kb on - strand, within HP15_2055at 2156.191 kb on - strand, within HP15_2055at 2156.191 kb on - strand, within HP15_2055at 2156.317 kb on + strand, within HP15_2055at 2156.325 kb on - strand, within HP15_2055at 2156.345 kb on + strand, within HP15_2055at 2156.397 kb on + strand, within HP15_2055at 2156.468 kb on - strand, within HP15_2055

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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2,154,394 + HP15_2053 0.67 +0.3
2,154,404 - HP15_2053 0.67 -1.0
2,154,404 - HP15_2053 0.67 -0.1
2,154,825 - HP15_2053 0.90 -1.0
2,154,887 + +0.2
2,154,895 - +0.3
2,154,974 - +0.7
2,155,366 + HP15_2054 0.15 -1.2
2,155,366 + HP15_2054 0.15 -1.2
2,155,384 - HP15_2054 0.23 -0.2
2,155,466 + HP15_2054 0.62 -2.1
2,155,568 - +0.1
2,155,700 - -1.5
2,155,704 + -0.6
2,155,712 - +0.4
2,155,786 + +1.6
2,155,799 - -1.2
2,155,818 + HP15_2055 0.11 -0.3
2,155,903 - HP15_2055 0.16 -1.7
2,155,920 - HP15_2055 0.17 -1.2
2,156,107 - HP15_2055 0.28 +0.8
2,156,109 + HP15_2055 0.28 -0.6
2,156,117 - HP15_2055 0.28 -0.9
2,156,125 + HP15_2055 0.29 +0.5
2,156,162 + HP15_2055 0.31 +0.7
2,156,186 - HP15_2055 0.32 +0.8
2,156,191 - HP15_2055 0.33 +0.3
2,156,191 - HP15_2055 0.33 +0.1
2,156,317 + HP15_2055 0.40 -0.1
2,156,325 - HP15_2055 0.41 +0.5
2,156,345 + HP15_2055 0.42 +0.5
2,156,397 + HP15_2055 0.45 -0.8
2,156,468 - HP15_2055 0.49 -1.2

Or see this region's nucleotide sequence