Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0195

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0193 and Psest_0194 are separated by 178 nucleotidesPsest_0194 and Psest_0195 are separated by 110 nucleotidesPsest_0195 and Psest_0196 are separated by 390 nucleotides Psest_0193: Psest_0193 - conserved hypothetical protein, at 189,910 to 190,341 _0193 Psest_0194: Psest_0194 - hypothetical protein, at 190,520 to 190,756 _0194 Psest_0195: Psest_0195 - Small integral membrane protein, at 190,867 to 191,037 _0195 Psest_0196: Psest_0196 - Uncharacterized membrane protein, required for spore maturation in B.subtilis., at 191,428 to 192,657 _0196 Position (kb) 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1at 189.974 kb on - strand, within Psest_0193at 190.138 kb on + strand, within Psest_0193at 190.474 kb on - strandat 190.505 kb on + strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strandat 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.881 kb on + strandat 190.881 kb on + strandat 190.881 kb on + strandat 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.974 kb on - strand, within Psest_0195at 190.974 kb on - strand, within Psest_0195at 191.089 kb on + strandat 191.089 kb on + strandat 191.089 kb on + strandat 191.089 kb on + strandat 191.089 kb on + strandat 191.090 kb on - strandat 191.090 kb on - strandat 191.090 kb on - strandat 191.222 kb on + strandat 191.222 kb on + strandat 191.222 kb on + strandat 191.324 kb on - strandat 191.358 kb on - strandat 191.528 kb on + strandat 191.528 kb on + strandat 191.528 kb on + strandat 191.528 kb on + strandat 191.529 kb on - strandat 191.529 kb on - strandat 191.529 kb on - strandat 191.865 kb on + strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.906 kb on - strand, within Psest_0196

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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189,974 - Psest_0193 0.15 +0.0
190,138 + Psest_0193 0.53 -1.1
190,474 - -1.3
190,505 + +1.0
190,506 - -0.6
190,506 - +0.8
190,506 - +0.3
190,506 - -0.1
190,506 - +0.9
190,506 - -0.6
190,506 - +1.0
190,661 + Psest_0194 0.59 +0.4
190,661 + Psest_0194 0.59 +0.0
190,661 + Psest_0194 0.59 +0.4
190,661 + Psest_0194 0.59 +0.6
190,661 + Psest_0194 0.59 +0.8
190,661 + Psest_0194 0.59 +0.3
190,661 + Psest_0194 0.59 +0.3
190,661 + Psest_0194 0.59 +0.3
190,661 + Psest_0194 0.59 -1.5
190,661 + Psest_0194 0.59 -0.7
190,661 + Psest_0194 0.59 +0.7
190,661 + Psest_0194 0.59 +0.1
190,662 - Psest_0194 0.60 -0.4
190,662 - Psest_0194 0.60 -1.0
190,662 - Psest_0194 0.60 -0.3
190,662 - Psest_0194 0.60 -1.3
190,662 - Psest_0194 0.60 -1.5
190,662 - Psest_0194 0.60 -1.1
190,662 - Psest_0194 0.60 +1.2
190,662 - Psest_0194 0.60 +0.3
190,662 - Psest_0194 0.60 +0.2
190,675 + Psest_0194 0.65 +0.1
190,675 + Psest_0194 0.65 -0.1
190,675 + Psest_0194 0.65 -0.5
190,675 + Psest_0194 0.65 -0.1
190,675 + Psest_0194 0.65 +0.0
190,675 + Psest_0194 0.65 +0.1
190,676 - Psest_0194 0.66 +1.0
190,676 - Psest_0194 0.66 +0.1
190,676 - Psest_0194 0.66 -0.4
190,676 - -1.3
190,676 - Psest_0194 0.66 -2.1
190,676 - Psest_0194 0.66 -0.6
190,881 + -0.2
190,881 + -0.4
190,881 + +0.4
190,884 + Psest_0195 0.10 +1.7
190,884 + Psest_0195 0.10 -0.4
190,884 + Psest_0195 0.10 +0.0
190,884 + Psest_0195 0.10 +0.2
190,884 + Psest_0195 0.10 -0.9
190,884 + Psest_0195 0.10 +0.5
190,884 + Psest_0195 0.10 -0.2
190,884 + Psest_0195 0.10 -0.7
190,884 + Psest_0195 0.10 -0.6
190,884 + Psest_0195 0.10 -0.8
190,884 + Psest_0195 0.10 +0.6
190,884 + Psest_0195 0.10 -0.3
190,884 + Psest_0195 0.10 -1.0
190,884 + Psest_0195 0.10 -1.4
190,884 + Psest_0195 0.10 -0.5
190,884 + Psest_0195 0.10 -0.8
190,885 - Psest_0195 0.11 -0.2
190,885 - Psest_0195 0.11 -2.0
190,885 - Psest_0195 0.11 +1.5
190,885 - Psest_0195 0.11 -1.7
190,885 - Psest_0195 0.11 -0.7
190,885 - Psest_0195 0.11 -0.8
190,885 - Psest_0195 0.11 -1.0
190,885 - Psest_0195 0.11 -0.5
190,885 - Psest_0195 0.11 -0.7
190,885 - Psest_0195 0.11 -3.2
190,974 - Psest_0195 0.63 -0.3
190,974 - Psest_0195 0.63 +0.2
191,089 + +0.2
191,089 + +0.8
191,089 + -0.5
191,089 + -0.2
191,089 + -0.0
191,090 - -0.3
191,090 - +1.5
191,090 - -1.1
191,222 + +0.2
191,222 + +1.0
191,222 + +1.7
191,324 - +0.0
191,358 - +0.9
191,528 + +0.9
191,528 + -0.5
191,528 + +0.6
191,528 + -0.2
191,529 - +0.2
191,529 - +0.4
191,529 - -0.4
191,865 + Psest_0196 0.36 -0.3
191,866 - Psest_0196 0.36 -1.4
191,866 - Psest_0196 0.36 +0.3
191,866 - Psest_0196 0.36 -0.1
191,866 - Psest_0196 0.36 -0.1
191,905 + Psest_0196 0.39 -0.1
191,905 + Psest_0196 0.39 +0.2
191,905 + Psest_0196 0.39 -0.7
191,905 + Psest_0196 0.39 +0.1
191,905 + Psest_0196 0.39 +0.6
191,906 - Psest_0196 0.39 +0.6

Or see this region's nucleotide sequence