Strain Fitness in Marinobacter adhaerens HP15 around HP15_1627

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1625 and HP15_1626 are separated by 167 nucleotidesHP15_1626 and HP15_1627 are separated by 170 nucleotidesHP15_1627 and HP15_1628 are separated by 251 nucleotides HP15_1625: HP15_1625 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,723,570 to 1,724,538 _1625 HP15_1626: HP15_1626 - conserved hypothetical protein, at 1,724,706 to 1,724,957 _1626 HP15_1627: HP15_1627 - conserved hypothetical protein, at 1,725,128 to 1,725,280 _1627 HP15_1628: HP15_1628 - peptidoglycan-binding domain 1 protein-like protein, at 1,725,532 to 1,726,653 _1628 Position (kb) 1725 1726Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1724.547 kb on - strandat 1724.563 kb on - strandat 1724.572 kb on + strandat 1724.576 kb on - strandat 1724.591 kb on + strandat 1724.647 kb on + strandat 1724.666 kb on + strandat 1724.671 kb on + strandat 1724.671 kb on + strandat 1724.671 kb on + strandat 1724.674 kb on - strandat 1724.674 kb on - strandat 1724.679 kb on - strandat 1724.906 kb on + strand, within HP15_1626at 1724.914 kb on - strand, within HP15_1626at 1724.936 kb on - strandat 1724.960 kb on - strandat 1725.010 kb on + strandat 1725.187 kb on + strand, within HP15_1627at 1725.273 kb on - strandat 1725.473 kb on + strandat 1725.545 kb on + strandat 1725.650 kb on + strand, within HP15_1628at 1725.901 kb on - strand, within HP15_1628at 1725.947 kb on - strand, within HP15_1628at 1725.952 kb on - strand, within HP15_1628at 1726.040 kb on - strand, within HP15_1628at 1726.067 kb on + strand, within HP15_1628at 1726.116 kb on + strand, within HP15_1628at 1726.197 kb on + strand, within HP15_1628at 1726.218 kb on + strand, within HP15_1628

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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1,724,547 - -0.0
1,724,563 - +1.9
1,724,572 + +1.1
1,724,576 - +1.5
1,724,591 + +0.7
1,724,647 + -0.3
1,724,666 + -1.3
1,724,671 + -0.5
1,724,671 + +0.1
1,724,671 + -0.5
1,724,674 - +0.4
1,724,674 - +0.7
1,724,679 - +0.1
1,724,906 + HP15_1626 0.79 +0.0
1,724,914 - HP15_1626 0.83 -2.0
1,724,936 - +0.7
1,724,960 - +0.2
1,725,010 + -0.7
1,725,187 + HP15_1627 0.39 -1.6
1,725,273 - +0.9
1,725,473 + +0.4
1,725,545 + -0.4
1,725,650 + HP15_1628 0.11 -0.5
1,725,901 - HP15_1628 0.33 -3.3
1,725,947 - HP15_1628 0.37 -0.3
1,725,952 - HP15_1628 0.37 +0.5
1,726,040 - HP15_1628 0.45 +0.6
1,726,067 + HP15_1628 0.48 +0.7
1,726,116 + HP15_1628 0.52 +1.0
1,726,197 + HP15_1628 0.59 +0.8
1,726,218 + HP15_1628 0.61 -0.0

Or see this region's nucleotide sequence