Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1625 and HP15_1626 are separated by 167 nucleotides HP15_1626 and HP15_1627 are separated by 170 nucleotides HP15_1627 and HP15_1628 are separated by 251 nucleotides
HP15_1625: HP15_1625 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,723,570 to 1,724,538
_1625
HP15_1626: HP15_1626 - conserved hypothetical protein, at 1,724,706 to 1,724,957
_1626
HP15_1627: HP15_1627 - conserved hypothetical protein, at 1,725,128 to 1,725,280
_1627
HP15_1628: HP15_1628 - peptidoglycan-binding domain 1 protein-like protein, at 1,725,532 to 1,726,653
_1628
Position (kb)
1725
1726 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1724.547 kb on - strand at 1724.563 kb on - strand at 1724.572 kb on + strand at 1724.576 kb on - strand at 1724.591 kb on + strand at 1724.647 kb on + strand at 1724.666 kb on + strand at 1724.671 kb on + strand at 1724.671 kb on + strand at 1724.671 kb on + strand at 1724.674 kb on - strand at 1724.674 kb on - strand at 1724.679 kb on - strand at 1724.906 kb on + strand, within HP15_1626 at 1724.914 kb on - strand, within HP15_1626 at 1724.936 kb on - strand at 1724.960 kb on - strand at 1725.010 kb on + strand at 1725.187 kb on + strand, within HP15_1627 at 1725.273 kb on - strand at 1725.473 kb on + strand at 1725.545 kb on + strand at 1725.650 kb on + strand, within HP15_1628 at 1725.901 kb on - strand, within HP15_1628 at 1725.947 kb on - strand, within HP15_1628 at 1725.952 kb on - strand, within HP15_1628 at 1726.040 kb on - strand, within HP15_1628 at 1726.067 kb on + strand, within HP15_1628 at 1726.116 kb on + strand, within HP15_1628 at 1726.197 kb on + strand, within HP15_1628 at 1726.218 kb on + strand, within HP15_1628
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 1,724,547 - -0.0 1,724,563 - +1.9 1,724,572 + +1.1 1,724,576 - +1.5 1,724,591 + +0.7 1,724,647 + -0.3 1,724,666 + -1.3 1,724,671 + -0.5 1,724,671 + +0.1 1,724,671 + -0.5 1,724,674 - +0.4 1,724,674 - +0.7 1,724,679 - +0.1 1,724,906 + HP15_1626 0.79 +0.0 1,724,914 - HP15_1626 0.83 -2.0 1,724,936 - +0.7 1,724,960 - +0.2 1,725,010 + -0.7 1,725,187 + HP15_1627 0.39 -1.6 1,725,273 - +0.9 1,725,473 + +0.4 1,725,545 + -0.4 1,725,650 + HP15_1628 0.11 -0.5 1,725,901 - HP15_1628 0.33 -3.3 1,725,947 - HP15_1628 0.37 -0.3 1,725,952 - HP15_1628 0.37 +0.5 1,726,040 - HP15_1628 0.45 +0.6 1,726,067 + HP15_1628 0.48 +0.7 1,726,116 + HP15_1628 0.52 +1.0 1,726,197 + HP15_1628 0.59 +0.8 1,726,218 + HP15_1628 0.61 -0.0
Or see this region's nucleotide sequence