Strain Fitness in Marinobacter adhaerens HP15 around HP15_1478

Experiment: m.b. Cholin acetate 153.15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1477 and HP15_tRNA27 are separated by 82 nucleotidesHP15_tRNA27 and HP15_1478 are separated by 35 nucleotidesHP15_1478 and HP15_1479 are separated by 14 nucleotides HP15_1477: HP15_1477 - flagellar hook-associated protein FlgL, at 1,552,659 to 1,553,882 _1477 HP15_tRNA27: HP15_tRNA27 - tRNA-Leu, at 1,553,965 to 1,554,051 _tRNA27 HP15_1478: HP15_1478 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,554,087 to 1,555,190 _1478 HP15_1479: HP15_1479 - queuine tRNA-ribosyltransferase, at 1,555,205 to 1,556,326 _1479 Position (kb) 1554 1555 1556Strain fitness (log2 ratio) -3 -2 -1 0 1at 1553.111 kb on + strand, within HP15_1477at 1553.178 kb on + strand, within HP15_1477at 1553.186 kb on - strand, within HP15_1477at 1553.186 kb on - strand, within HP15_1477at 1553.309 kb on - strand, within HP15_1477at 1553.326 kb on - strand, within HP15_1477at 1553.326 kb on - strand, within HP15_1477at 1553.346 kb on - strand, within HP15_1477at 1553.346 kb on - strand, within HP15_1477at 1553.437 kb on + strand, within HP15_1477at 1553.445 kb on - strand, within HP15_1477at 1553.572 kb on - strand, within HP15_1477at 1553.574 kb on + strand, within HP15_1477at 1553.605 kb on - strand, within HP15_1477at 1553.684 kb on - strand, within HP15_1477at 1553.779 kb on + strandat 1553.787 kb on - strandat 1553.787 kb on - strandat 1553.941 kb on + strandat 1553.941 kb on + strandat 1554.223 kb on + strand, within HP15_1478at 1554.272 kb on + strand, within HP15_1478at 1554.458 kb on + strand, within HP15_1478at 1554.483 kb on - strand, within HP15_1478at 1554.498 kb on - strand, within HP15_1478at 1554.578 kb on - strand, within HP15_1478at 1554.768 kb on - strand, within HP15_1478at 1555.282 kb on - strandat 1555.282 kb on - strandat 1555.305 kb on + strandat 1555.315 kb on + strandat 1555.385 kb on - strand, within HP15_1479at 1555.385 kb on - strand, within HP15_1479at 1555.401 kb on + strand, within HP15_1479at 1555.409 kb on - strand, within HP15_1479at 1555.455 kb on + strand, within HP15_1479at 1555.455 kb on + strand, within HP15_1479at 1555.455 kb on + strand, within HP15_1479at 1555.460 kb on + strand, within HP15_1479at 1555.463 kb on - strand, within HP15_1479at 1555.463 kb on - strand, within HP15_1479at 1555.463 kb on - strand, within HP15_1479at 1555.463 kb on - strand, within HP15_1479at 1555.931 kb on + strand, within HP15_1479at 1556.000 kb on - strand, within HP15_1479at 1556.071 kb on - strand, within HP15_1479

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
remove
1,553,111 + HP15_1477 0.37 +0.1
1,553,178 + HP15_1477 0.42 -0.2
1,553,186 - HP15_1477 0.43 -1.5
1,553,186 - HP15_1477 0.43 +0.0
1,553,309 - HP15_1477 0.53 -0.0
1,553,326 - HP15_1477 0.54 -0.9
1,553,326 - HP15_1477 0.54 +1.2
1,553,346 - HP15_1477 0.56 +0.0
1,553,346 - HP15_1477 0.56 -0.4
1,553,437 + HP15_1477 0.64 -1.3
1,553,445 - HP15_1477 0.64 -1.1
1,553,572 - HP15_1477 0.75 -0.1
1,553,574 + HP15_1477 0.75 -0.2
1,553,605 - HP15_1477 0.77 -0.2
1,553,684 - HP15_1477 0.84 -0.4
1,553,779 + -0.2
1,553,787 - -0.7
1,553,787 - -0.7
1,553,941 + +0.7
1,553,941 + +0.6
1,554,223 + HP15_1478 0.12 -1.4
1,554,272 + HP15_1478 0.17 -0.8
1,554,458 + HP15_1478 0.34 -1.5
1,554,483 - HP15_1478 0.36 -1.5
1,554,498 - HP15_1478 0.37 -1.6
1,554,578 - HP15_1478 0.44 +0.7
1,554,768 - HP15_1478 0.62 -2.2
1,555,282 - +0.3
1,555,282 - -0.8
1,555,305 + +0.1
1,555,315 + +0.9
1,555,385 - HP15_1479 0.16 -0.7
1,555,385 - HP15_1479 0.16 -0.5
1,555,401 + HP15_1479 0.17 -0.6
1,555,409 - HP15_1479 0.18 -1.2
1,555,455 + HP15_1479 0.22 +0.1
1,555,455 + HP15_1479 0.22 +0.2
1,555,455 + HP15_1479 0.22 -0.2
1,555,460 + HP15_1479 0.23 -0.2
1,555,463 - HP15_1479 0.23 +0.1
1,555,463 - HP15_1479 0.23 -0.8
1,555,463 - HP15_1479 0.23 -1.3
1,555,463 - HP15_1479 0.23 -3.3
1,555,931 + HP15_1479 0.65 +0.6
1,556,000 - HP15_1479 0.71 +0.3
1,556,071 - HP15_1479 0.77 -0.5

Or see this region's nucleotide sequence