Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1477 and HP15_tRNA27 are separated by 82 nucleotides HP15_tRNA27 and HP15_1478 are separated by 35 nucleotides HP15_1478 and HP15_1479 are separated by 14 nucleotides
HP15_1477: HP15_1477 - flagellar hook-associated protein FlgL, at 1,552,659 to 1,553,882
_1477
HP15_tRNA27: HP15_tRNA27 - tRNA-Leu, at 1,553,965 to 1,554,051
_tRNA27
HP15_1478: HP15_1478 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,554,087 to 1,555,190
_1478
HP15_1479: HP15_1479 - queuine tRNA-ribosyltransferase, at 1,555,205 to 1,556,326
_1479
Position (kb)
1554
1555
1556 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1553.111 kb on + strand, within HP15_1477 at 1553.178 kb on + strand, within HP15_1477 at 1553.186 kb on - strand, within HP15_1477 at 1553.186 kb on - strand, within HP15_1477 at 1553.309 kb on - strand, within HP15_1477 at 1553.326 kb on - strand, within HP15_1477 at 1553.326 kb on - strand, within HP15_1477 at 1553.346 kb on - strand, within HP15_1477 at 1553.346 kb on - strand, within HP15_1477 at 1553.437 kb on + strand, within HP15_1477 at 1553.445 kb on - strand, within HP15_1477 at 1553.572 kb on - strand, within HP15_1477 at 1553.574 kb on + strand, within HP15_1477 at 1553.605 kb on - strand, within HP15_1477 at 1553.684 kb on - strand, within HP15_1477 at 1553.779 kb on + strand at 1553.787 kb on - strand at 1553.787 kb on - strand at 1553.941 kb on + strand at 1553.941 kb on + strand at 1554.223 kb on + strand, within HP15_1478 at 1554.272 kb on + strand, within HP15_1478 at 1554.458 kb on + strand, within HP15_1478 at 1554.483 kb on - strand, within HP15_1478 at 1554.498 kb on - strand, within HP15_1478 at 1554.578 kb on - strand, within HP15_1478 at 1554.768 kb on - strand, within HP15_1478 at 1555.282 kb on - strand at 1555.282 kb on - strand at 1555.305 kb on + strand at 1555.315 kb on + strand at 1555.385 kb on - strand, within HP15_1479 at 1555.385 kb on - strand, within HP15_1479 at 1555.401 kb on + strand, within HP15_1479 at 1555.409 kb on - strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.460 kb on + strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.931 kb on + strand, within HP15_1479 at 1556.000 kb on - strand, within HP15_1479 at 1556.071 kb on - strand, within HP15_1479
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 1,553,111 + HP15_1477 0.37 +0.1 1,553,178 + HP15_1477 0.42 -0.2 1,553,186 - HP15_1477 0.43 -1.5 1,553,186 - HP15_1477 0.43 +0.0 1,553,309 - HP15_1477 0.53 -0.0 1,553,326 - HP15_1477 0.54 -0.9 1,553,326 - HP15_1477 0.54 +1.2 1,553,346 - HP15_1477 0.56 +0.0 1,553,346 - HP15_1477 0.56 -0.4 1,553,437 + HP15_1477 0.64 -1.3 1,553,445 - HP15_1477 0.64 -1.1 1,553,572 - HP15_1477 0.75 -0.1 1,553,574 + HP15_1477 0.75 -0.2 1,553,605 - HP15_1477 0.77 -0.2 1,553,684 - HP15_1477 0.84 -0.4 1,553,779 + -0.2 1,553,787 - -0.7 1,553,787 - -0.7 1,553,941 + +0.7 1,553,941 + +0.6 1,554,223 + HP15_1478 0.12 -1.4 1,554,272 + HP15_1478 0.17 -0.8 1,554,458 + HP15_1478 0.34 -1.5 1,554,483 - HP15_1478 0.36 -1.5 1,554,498 - HP15_1478 0.37 -1.6 1,554,578 - HP15_1478 0.44 +0.7 1,554,768 - HP15_1478 0.62 -2.2 1,555,282 - +0.3 1,555,282 - -0.8 1,555,305 + +0.1 1,555,315 + +0.9 1,555,385 - HP15_1479 0.16 -0.7 1,555,385 - HP15_1479 0.16 -0.5 1,555,401 + HP15_1479 0.17 -0.6 1,555,409 - HP15_1479 0.18 -1.2 1,555,455 + HP15_1479 0.22 +0.1 1,555,455 + HP15_1479 0.22 +0.2 1,555,455 + HP15_1479 0.22 -0.2 1,555,460 + HP15_1479 0.23 -0.2 1,555,463 - HP15_1479 0.23 +0.1 1,555,463 - HP15_1479 0.23 -0.8 1,555,463 - HP15_1479 0.23 -1.3 1,555,463 - HP15_1479 0.23 -3.3 1,555,931 + HP15_1479 0.65 +0.6 1,556,000 - HP15_1479 0.71 +0.3 1,556,071 - HP15_1479 0.77 -0.5
Or see this region's nucleotide sequence