Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1470 and HP15_1471 are separated by 76 nucleotides HP15_1471 and HP15_1472 are separated by 82 nucleotides HP15_1472 and HP15_1473 are separated by 19 nucleotides
HP15_1470: HP15_1470 - flagellar hook protein FlgE, at 1,544,196 to 1,546,094
_1470
HP15_1471: HP15_1471 - flagellar basal-body rod FlgF, at 1,546,171 to 1,546,923
_1471
HP15_1472: HP15_1472 - flagellar basal-body rod protein FlgG, at 1,547,006 to 1,547,794
_1472
HP15_1473: HP15_1473 - flagellar basal body L-ring protein, at 1,547,814 to 1,548,515
_1473
Position (kb)
1546
1547 Strain fitness (log2 ratio)
-2
-1
0
1 at 1545.292 kb on - strand, within HP15_1470 at 1545.366 kb on + strand, within HP15_1470 at 1545.403 kb on + strand, within HP15_1470 at 1545.473 kb on + strand, within HP15_1470 at 1545.479 kb on - strand, within HP15_1470 at 1545.505 kb on - strand, within HP15_1470 at 1545.626 kb on - strand, within HP15_1470 at 1545.687 kb on + strand, within HP15_1470 at 1545.692 kb on - strand, within HP15_1470 at 1545.746 kb on + strand, within HP15_1470 at 1545.746 kb on + strand, within HP15_1470 at 1545.806 kb on + strand, within HP15_1470 at 1545.813 kb on + strand, within HP15_1470 at 1545.956 kb on - strand at 1545.993 kb on + strand at 1546.005 kb on - strand at 1546.073 kb on - strand at 1546.084 kb on + strand at 1546.238 kb on - strand at 1546.290 kb on + strand, within HP15_1471 at 1546.291 kb on + strand, within HP15_1471 at 1546.332 kb on + strand, within HP15_1471 at 1546.383 kb on + strand, within HP15_1471 at 1546.391 kb on - strand, within HP15_1471 at 1546.429 kb on - strand, within HP15_1471 at 1546.572 kb on - strand, within HP15_1471 at 1546.647 kb on + strand, within HP15_1471 at 1546.660 kb on - strand, within HP15_1471 at 1546.670 kb on - strand, within HP15_1471 at 1546.693 kb on + strand, within HP15_1471 at 1546.694 kb on + strand, within HP15_1471 at 1546.701 kb on - strand, within HP15_1471 at 1546.828 kb on - strand, within HP15_1471 at 1546.836 kb on - strand, within HP15_1471 at 1546.925 kb on - strand at 1546.928 kb on + strand at 1546.959 kb on - strand at 1547.010 kb on + strand at 1547.022 kb on + strand at 1547.089 kb on + strand, within HP15_1472 at 1547.121 kb on - strand, within HP15_1472 at 1547.121 kb on - strand, within HP15_1472 at 1547.121 kb on - strand, within HP15_1472 at 1547.121 kb on - strand, within HP15_1472 at 1547.121 kb on - strand, within HP15_1472 at 1547.216 kb on + strand, within HP15_1472 at 1547.219 kb on - strand, within HP15_1472 at 1547.396 kb on + strand, within HP15_1472 at 1547.401 kb on + strand, within HP15_1472 at 1547.560 kb on - strand, within HP15_1472 at 1547.578 kb on + strand, within HP15_1472 at 1547.596 kb on - strand, within HP15_1472 at 1547.637 kb on - strand, within HP15_1472 at 1547.651 kb on - strand, within HP15_1472 at 1547.668 kb on + strand, within HP15_1472 at 1547.673 kb on + strand, within HP15_1472 at 1547.733 kb on + strand at 1547.785 kb on - strand at 1547.830 kb on + strand at 1547.831 kb on + strand at 1547.839 kb on - strand at 1547.922 kb on + strand, within HP15_1473
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 1,545,292 - HP15_1470 0.58 -0.1 1,545,366 + HP15_1470 0.62 -1.0 1,545,403 + HP15_1470 0.64 -1.1 1,545,473 + HP15_1470 0.67 +0.7 1,545,479 - HP15_1470 0.68 -0.9 1,545,505 - HP15_1470 0.69 -0.2 1,545,626 - HP15_1470 0.75 -1.2 1,545,687 + HP15_1470 0.79 -0.4 1,545,692 - HP15_1470 0.79 -0.8 1,545,746 + HP15_1470 0.82 +0.9 1,545,746 + HP15_1470 0.82 -2.2 1,545,806 + HP15_1470 0.85 -1.0 1,545,813 + HP15_1470 0.85 -0.5 1,545,956 - -0.9 1,545,993 + -1.0 1,546,005 - +0.1 1,546,073 - -2.7 1,546,084 + -0.8 1,546,238 - +0.2 1,546,290 + HP15_1471 0.16 -1.7 1,546,291 + HP15_1471 0.16 -0.8 1,546,332 + HP15_1471 0.21 -1.5 1,546,383 + HP15_1471 0.28 -1.1 1,546,391 - HP15_1471 0.29 +0.1 1,546,429 - HP15_1471 0.34 -1.7 1,546,572 - HP15_1471 0.53 +0.1 1,546,647 + HP15_1471 0.63 -1.5 1,546,660 - HP15_1471 0.65 -1.3 1,546,670 - HP15_1471 0.66 -1.4 1,546,693 + HP15_1471 0.69 -1.2 1,546,694 + HP15_1471 0.69 -1.9 1,546,701 - HP15_1471 0.70 -0.7 1,546,828 - HP15_1471 0.87 -0.5 1,546,836 - HP15_1471 0.88 -0.3 1,546,925 - +0.2 1,546,928 + -0.1 1,546,959 - -0.2 1,547,010 + -1.1 1,547,022 + -0.8 1,547,089 + HP15_1472 0.11 +0.4 1,547,121 - HP15_1472 0.15 -0.1 1,547,121 - HP15_1472 0.15 -0.4 1,547,121 - HP15_1472 0.15 +0.4 1,547,121 - HP15_1472 0.15 +0.3 1,547,121 - HP15_1472 0.15 +0.4 1,547,216 + HP15_1472 0.27 -1.3 1,547,219 - HP15_1472 0.27 -0.6 1,547,396 + HP15_1472 0.49 -1.1 1,547,401 + HP15_1472 0.50 -1.9 1,547,560 - HP15_1472 0.70 +0.0 1,547,578 + HP15_1472 0.72 -0.4 1,547,596 - HP15_1472 0.75 -1.1 1,547,637 - HP15_1472 0.80 -1.5 1,547,651 - HP15_1472 0.82 -0.5 1,547,668 + HP15_1472 0.84 -2.4 1,547,673 + HP15_1472 0.85 -1.4 1,547,733 + -1.1 1,547,785 - +0.0 1,547,830 + +0.7 1,547,831 + +0.6 1,547,839 - -0.4 1,547,922 + HP15_1473 0.15 -1.1
Or see this region's nucleotide sequence