Strain Fitness in Marinobacter adhaerens HP15 around HP15_1471

Experiment: m.b. Cholin acetate 153.15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1470 and HP15_1471 are separated by 76 nucleotidesHP15_1471 and HP15_1472 are separated by 82 nucleotidesHP15_1472 and HP15_1473 are separated by 19 nucleotides HP15_1470: HP15_1470 - flagellar hook protein FlgE, at 1,544,196 to 1,546,094 _1470 HP15_1471: HP15_1471 - flagellar basal-body rod FlgF, at 1,546,171 to 1,546,923 _1471 HP15_1472: HP15_1472 - flagellar basal-body rod protein FlgG, at 1,547,006 to 1,547,794 _1472 HP15_1473: HP15_1473 - flagellar basal body L-ring protein, at 1,547,814 to 1,548,515 _1473 Position (kb) 1546 1547Strain fitness (log2 ratio) -2 -1 0 1at 1545.292 kb on - strand, within HP15_1470at 1545.366 kb on + strand, within HP15_1470at 1545.403 kb on + strand, within HP15_1470at 1545.473 kb on + strand, within HP15_1470at 1545.479 kb on - strand, within HP15_1470at 1545.505 kb on - strand, within HP15_1470at 1545.626 kb on - strand, within HP15_1470at 1545.687 kb on + strand, within HP15_1470at 1545.692 kb on - strand, within HP15_1470at 1545.746 kb on + strand, within HP15_1470at 1545.746 kb on + strand, within HP15_1470at 1545.806 kb on + strand, within HP15_1470at 1545.813 kb on + strand, within HP15_1470at 1545.956 kb on - strandat 1545.993 kb on + strandat 1546.005 kb on - strandat 1546.073 kb on - strandat 1546.084 kb on + strandat 1546.238 kb on - strandat 1546.290 kb on + strand, within HP15_1471at 1546.291 kb on + strand, within HP15_1471at 1546.332 kb on + strand, within HP15_1471at 1546.383 kb on + strand, within HP15_1471at 1546.391 kb on - strand, within HP15_1471at 1546.429 kb on - strand, within HP15_1471at 1546.572 kb on - strand, within HP15_1471at 1546.647 kb on + strand, within HP15_1471at 1546.660 kb on - strand, within HP15_1471at 1546.670 kb on - strand, within HP15_1471at 1546.693 kb on + strand, within HP15_1471at 1546.694 kb on + strand, within HP15_1471at 1546.701 kb on - strand, within HP15_1471at 1546.828 kb on - strand, within HP15_1471at 1546.836 kb on - strand, within HP15_1471at 1546.925 kb on - strandat 1546.928 kb on + strandat 1546.959 kb on - strandat 1547.010 kb on + strandat 1547.022 kb on + strandat 1547.089 kb on + strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.216 kb on + strand, within HP15_1472at 1547.219 kb on - strand, within HP15_1472at 1547.396 kb on + strand, within HP15_1472at 1547.401 kb on + strand, within HP15_1472at 1547.560 kb on - strand, within HP15_1472at 1547.578 kb on + strand, within HP15_1472at 1547.596 kb on - strand, within HP15_1472at 1547.637 kb on - strand, within HP15_1472at 1547.651 kb on - strand, within HP15_1472at 1547.668 kb on + strand, within HP15_1472at 1547.673 kb on + strand, within HP15_1472at 1547.733 kb on + strandat 1547.785 kb on - strandat 1547.830 kb on + strandat 1547.831 kb on + strandat 1547.839 kb on - strandat 1547.922 kb on + strand, within HP15_1473

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
remove
1,545,292 - HP15_1470 0.58 -0.1
1,545,366 + HP15_1470 0.62 -1.0
1,545,403 + HP15_1470 0.64 -1.1
1,545,473 + HP15_1470 0.67 +0.7
1,545,479 - HP15_1470 0.68 -0.9
1,545,505 - HP15_1470 0.69 -0.2
1,545,626 - HP15_1470 0.75 -1.2
1,545,687 + HP15_1470 0.79 -0.4
1,545,692 - HP15_1470 0.79 -0.8
1,545,746 + HP15_1470 0.82 +0.9
1,545,746 + HP15_1470 0.82 -2.2
1,545,806 + HP15_1470 0.85 -1.0
1,545,813 + HP15_1470 0.85 -0.5
1,545,956 - -0.9
1,545,993 + -1.0
1,546,005 - +0.1
1,546,073 - -2.7
1,546,084 + -0.8
1,546,238 - +0.2
1,546,290 + HP15_1471 0.16 -1.7
1,546,291 + HP15_1471 0.16 -0.8
1,546,332 + HP15_1471 0.21 -1.5
1,546,383 + HP15_1471 0.28 -1.1
1,546,391 - HP15_1471 0.29 +0.1
1,546,429 - HP15_1471 0.34 -1.7
1,546,572 - HP15_1471 0.53 +0.1
1,546,647 + HP15_1471 0.63 -1.5
1,546,660 - HP15_1471 0.65 -1.3
1,546,670 - HP15_1471 0.66 -1.4
1,546,693 + HP15_1471 0.69 -1.2
1,546,694 + HP15_1471 0.69 -1.9
1,546,701 - HP15_1471 0.70 -0.7
1,546,828 - HP15_1471 0.87 -0.5
1,546,836 - HP15_1471 0.88 -0.3
1,546,925 - +0.2
1,546,928 + -0.1
1,546,959 - -0.2
1,547,010 + -1.1
1,547,022 + -0.8
1,547,089 + HP15_1472 0.11 +0.4
1,547,121 - HP15_1472 0.15 -0.1
1,547,121 - HP15_1472 0.15 -0.4
1,547,121 - HP15_1472 0.15 +0.4
1,547,121 - HP15_1472 0.15 +0.3
1,547,121 - HP15_1472 0.15 +0.4
1,547,216 + HP15_1472 0.27 -1.3
1,547,219 - HP15_1472 0.27 -0.6
1,547,396 + HP15_1472 0.49 -1.1
1,547,401 + HP15_1472 0.50 -1.9
1,547,560 - HP15_1472 0.70 +0.0
1,547,578 + HP15_1472 0.72 -0.4
1,547,596 - HP15_1472 0.75 -1.1
1,547,637 - HP15_1472 0.80 -1.5
1,547,651 - HP15_1472 0.82 -0.5
1,547,668 + HP15_1472 0.84 -2.4
1,547,673 + HP15_1472 0.85 -1.4
1,547,733 + -1.1
1,547,785 - +0.0
1,547,830 + +0.7
1,547,831 + +0.6
1,547,839 - -0.4
1,547,922 + HP15_1473 0.15 -1.1

Or see this region's nucleotide sequence