Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1368 and Psest_1369 overlap by 4 nucleotides Psest_1369 and Psest_1370 are separated by 109 nucleotides Psest_1370 and Psest_1371 are separated by 12 nucleotides Psest_1371 and Psest_1372 are separated by 473 nucleotides
Psest_1368: Psest_1368 - Putative threonine efflux protein, at 1,477,404 to 1,477,991
_1368
Psest_1369: Psest_1369 - AraC-type DNA-binding domain-containing proteins, at 1,477,988 to 1,478,827
_1369
Psest_1370: Psest_1370 - hypothetical protein, at 1,478,937 to 1,479,362
_1370
Psest_1371: Psest_1371 - hypothetical protein, at 1,479,375 to 1,479,725
_1371
Psest_1372: Psest_1372 - Methyl-accepting chemotaxis protein, at 1,480,199 to 1,481,818
_1372
Position (kb)
1478
1479
1480 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1477.974 kb on + strand at 1477.974 kb on + strand at 1478.160 kb on + strand, within Psest_1369 at 1478.160 kb on + strand, within Psest_1369 at 1478.160 kb on + strand, within Psest_1369 at 1478.161 kb on - strand, within Psest_1369 at 1478.161 kb on - strand, within Psest_1369 at 1478.161 kb on - strand, within Psest_1369 at 1478.209 kb on - strand, within Psest_1369 at 1478.280 kb on + strand, within Psest_1369 at 1478.280 kb on + strand, within Psest_1369 at 1478.280 kb on + strand, within Psest_1369 at 1478.280 kb on + strand, within Psest_1369 at 1478.280 kb on + strand, within Psest_1369 at 1478.280 kb on + strand, within Psest_1369 at 1478.280 kb on + strand, within Psest_1369 at 1478.281 kb on - strand, within Psest_1369 at 1478.281 kb on - strand, within Psest_1369 at 1478.367 kb on + strand, within Psest_1369 at 1478.368 kb on - strand, within Psest_1369 at 1478.368 kb on - strand, within Psest_1369 at 1478.428 kb on - strand, within Psest_1369 at 1478.428 kb on - strand, within Psest_1369 at 1478.428 kb on - strand, within Psest_1369 at 1478.428 kb on - strand, within Psest_1369 at 1478.429 kb on + strand, within Psest_1369 at 1478.429 kb on + strand, within Psest_1369 at 1478.429 kb on + strand, within Psest_1369 at 1478.553 kb on + strand, within Psest_1369 at 1478.553 kb on + strand, within Psest_1369 at 1478.554 kb on - strand, within Psest_1369 at 1478.554 kb on - strand, within Psest_1369 at 1478.565 kb on + strand, within Psest_1369 at 1478.566 kb on - strand, within Psest_1369 at 1478.566 kb on - strand, within Psest_1369 at 1478.566 kb on - strand, within Psest_1369 at 1478.670 kb on + strand, within Psest_1369 at 1478.670 kb on + strand, within Psest_1369 at 1478.670 kb on + strand, within Psest_1369 at 1478.670 kb on + strand, within Psest_1369 at 1478.671 kb on - strand, within Psest_1369 at 1478.671 kb on - strand, within Psest_1369 at 1478.671 kb on - strand, within Psest_1369 at 1478.865 kb on + strand at 1478.866 kb on - strand at 1479.117 kb on + strand, within Psest_1370 at 1479.117 kb on + strand, within Psest_1370 at 1479.118 kb on - strand, within Psest_1370 at 1479.118 kb on - strand, within Psest_1370 at 1479.118 kb on - strand, within Psest_1370 at 1479.118 kb on - strand, within Psest_1370 at 1479.376 kb on + strand at 1479.377 kb on - strand at 1479.377 kb on - strand at 1479.377 kb on - strand at 1479.377 kb on - strand at 1479.419 kb on - strand, within Psest_1371 at 1479.532 kb on + strand, within Psest_1371 at 1479.533 kb on - strand, within Psest_1371 at 1479.533 kb on - strand, within Psest_1371 at 1479.607 kb on + strand, within Psest_1371 at 1479.736 kb on + strand at 1479.869 kb on - strand at 1479.939 kb on + strand at 1480.062 kb on - strand at 1480.093 kb on + strand at 1480.093 kb on + strand at 1480.093 kb on + strand at 1480.094 kb on - strand at 1480.147 kb on + strand at 1480.147 kb on + strand at 1480.147 kb on + strand at 1480.148 kb on - strand at 1480.148 kb on - strand at 1480.148 kb on - strand at 1480.148 kb on - strand at 1480.148 kb on - strand at 1480.148 kb on - strand at 1480.328 kb on + strand at 1480.328 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 1,477,974 + +0.2 1,477,974 + -0.2 1,478,160 + Psest_1369 0.20 +0.7 1,478,160 + Psest_1369 0.20 -0.1 1,478,160 + Psest_1369 0.20 +0.2 1,478,161 - Psest_1369 0.21 +0.5 1,478,161 - Psest_1369 0.21 +1.0 1,478,161 - Psest_1369 0.21 -0.8 1,478,209 - Psest_1369 0.26 -2.0 1,478,280 + Psest_1369 0.35 +0.0 1,478,280 + Psest_1369 0.35 +0.7 1,478,280 + Psest_1369 0.35 +0.6 1,478,280 + Psest_1369 0.35 -0.2 1,478,280 + Psest_1369 0.35 +0.7 1,478,280 + Psest_1369 0.35 +0.6 1,478,280 + Psest_1369 0.35 +0.2 1,478,281 - Psest_1369 0.35 +0.1 1,478,281 - Psest_1369 0.35 +1.0 1,478,367 + Psest_1369 0.45 -0.5 1,478,368 - Psest_1369 0.45 +0.0 1,478,368 - Psest_1369 0.45 +0.8 1,478,428 - Psest_1369 0.52 +2.0 1,478,428 - Psest_1369 0.52 -1.8 1,478,428 - Psest_1369 0.52 +0.2 1,478,428 - Psest_1369 0.52 +1.0 1,478,429 + Psest_1369 0.53 -1.0 1,478,429 + Psest_1369 0.53 +0.3 1,478,429 + Psest_1369 0.53 +0.0 1,478,553 + Psest_1369 0.67 -0.2 1,478,553 + Psest_1369 0.67 +0.3 1,478,554 - Psest_1369 0.67 +1.3 1,478,554 - Psest_1369 0.67 +0.2 1,478,565 + Psest_1369 0.69 -0.1 1,478,566 - Psest_1369 0.69 +0.3 1,478,566 - Psest_1369 0.69 +0.8 1,478,566 - Psest_1369 0.69 +0.0 1,478,670 + Psest_1369 0.81 -0.0 1,478,670 + Psest_1369 0.81 -0.1 1,478,670 + Psest_1369 0.81 -1.0 1,478,670 + Psest_1369 0.81 +0.3 1,478,671 - Psest_1369 0.81 +0.3 1,478,671 - Psest_1369 0.81 -0.5 1,478,671 - Psest_1369 0.81 -1.3 1,478,865 + -1.1 1,478,866 - -1.8 1,479,117 + Psest_1370 0.42 -1.0 1,479,117 + Psest_1370 0.42 -0.1 1,479,118 - Psest_1370 0.42 -1.1 1,479,118 - Psest_1370 0.42 -1.5 1,479,118 - Psest_1370 0.42 +0.8 1,479,118 - Psest_1370 0.42 -0.2 1,479,376 + -0.1 1,479,377 - -0.3 1,479,377 - -0.6 1,479,377 - -0.4 1,479,377 - +0.7 1,479,419 - Psest_1371 0.13 +0.0 1,479,532 + Psest_1371 0.45 -0.2 1,479,533 - Psest_1371 0.45 +0.1 1,479,533 - Psest_1371 0.45 +0.2 1,479,607 + Psest_1371 0.66 -1.0 1,479,736 + -0.5 1,479,869 - +0.3 1,479,939 + -2.0 1,480,062 - -0.5 1,480,093 + +0.8 1,480,093 + +0.0 1,480,093 + +0.5 1,480,094 - +0.1 1,480,147 + +0.7 1,480,147 + +0.2 1,480,147 + +0.3 1,480,148 - -0.2 1,480,148 - +1.0 1,480,148 - -1.2 1,480,148 - +0.6 1,480,148 - +1.2 1,480,148 - -0.3 1,480,328 + -0.7 1,480,328 + +0.1
Or see this region's nucleotide sequence