Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1180 and HP15_tRNA18 are separated by 69 nucleotides HP15_tRNA18 and HP15_1181 are separated by 440 nucleotides HP15_1181 and HP15_1182 are separated by 44 nucleotides HP15_1182 and HP15_1183 are separated by 31 nucleotides
HP15_1180: HP15_1180 - ribonuclease HII, at 1,212,915 to 1,213,601
_1180
HP15_tRNA18: HP15_tRNA18 - tRNA-Met, at 1,213,671 to 1,213,747
_tRNA18
HP15_1181: HP15_1181 - hypothetical protein, at 1,214,188 to 1,214,301
_1181
HP15_1182: HP15_1182 - ribonuclease HII-like protein, at 1,214,346 to 1,214,561
_1182
HP15_1183: HP15_1183 - signal transduction histidine kinase with CHASE2 and PAS sensor domains, at 1,214,593 to 1,217,160
_1183
Position (kb)
1214
1215 Strain fitness (log2 ratio)
-2
-1
0
1 at 1213.207 kb on + strand, within HP15_1180 at 1213.275 kb on - strand, within HP15_1180 at 1213.405 kb on + strand, within HP15_1180 at 1213.423 kb on - strand, within HP15_1180 at 1213.471 kb on + strand, within HP15_1180 at 1213.479 kb on - strand, within HP15_1180 at 1213.490 kb on + strand, within HP15_1180 at 1213.509 kb on - strand, within HP15_1180 at 1213.581 kb on - strand at 1213.777 kb on + strand at 1213.886 kb on - strand at 1214.026 kb on + strand at 1214.229 kb on + strand, within HP15_1181 at 1214.570 kb on - strand at 1214.646 kb on - strand at 1214.646 kb on - strand at 1214.865 kb on + strand, within HP15_1183 at 1214.873 kb on - strand, within HP15_1183 at 1214.892 kb on - strand, within HP15_1183 at 1214.892 kb on - strand, within HP15_1183 at 1215.078 kb on + strand, within HP15_1183 at 1215.271 kb on - strand, within HP15_1183
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 1,213,207 + HP15_1180 0.43 -1.1 1,213,275 - HP15_1180 0.52 +0.2 1,213,405 + HP15_1180 0.71 -0.8 1,213,423 - HP15_1180 0.74 +0.0 1,213,471 + HP15_1180 0.81 -2.7 1,213,479 - HP15_1180 0.82 +1.1 1,213,490 + HP15_1180 0.84 +0.8 1,213,509 - HP15_1180 0.86 +1.0 1,213,581 - +0.1 1,213,777 + +0.1 1,213,886 - +1.3 1,214,026 + -1.2 1,214,229 + HP15_1181 0.36 -1.1 1,214,570 - -0.5 1,214,646 - -1.2 1,214,646 - +0.1 1,214,865 + HP15_1183 0.11 -0.3 1,214,873 - HP15_1183 0.11 -1.0 1,214,892 - HP15_1183 0.12 -0.2 1,214,892 - HP15_1183 0.12 +0.7 1,215,078 + HP15_1183 0.19 +1.0 1,215,271 - HP15_1183 0.26 +1.5
Or see this region's nucleotide sequence