Strain Fitness in Marinobacter adhaerens HP15 around HP15_1181

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1180 and HP15_tRNA18 are separated by 69 nucleotidesHP15_tRNA18 and HP15_1181 are separated by 440 nucleotidesHP15_1181 and HP15_1182 are separated by 44 nucleotidesHP15_1182 and HP15_1183 are separated by 31 nucleotides HP15_1180: HP15_1180 - ribonuclease HII, at 1,212,915 to 1,213,601 _1180 HP15_tRNA18: HP15_tRNA18 - tRNA-Met, at 1,213,671 to 1,213,747 _tRNA18 HP15_1181: HP15_1181 - hypothetical protein, at 1,214,188 to 1,214,301 _1181 HP15_1182: HP15_1182 - ribonuclease HII-like protein, at 1,214,346 to 1,214,561 _1182 HP15_1183: HP15_1183 - signal transduction histidine kinase with CHASE2 and PAS sensor domains, at 1,214,593 to 1,217,160 _1183 Position (kb) 1214 1215Strain fitness (log2 ratio) -2 -1 0 1at 1213.207 kb on + strand, within HP15_1180at 1213.275 kb on - strand, within HP15_1180at 1213.405 kb on + strand, within HP15_1180at 1213.423 kb on - strand, within HP15_1180at 1213.471 kb on + strand, within HP15_1180at 1213.479 kb on - strand, within HP15_1180at 1213.490 kb on + strand, within HP15_1180at 1213.509 kb on - strand, within HP15_1180at 1213.581 kb on - strandat 1213.777 kb on + strandat 1213.886 kb on - strandat 1214.026 kb on + strandat 1214.229 kb on + strand, within HP15_1181at 1214.570 kb on - strandat 1214.646 kb on - strandat 1214.646 kb on - strandat 1214.865 kb on + strand, within HP15_1183at 1214.873 kb on - strand, within HP15_1183at 1214.892 kb on - strand, within HP15_1183at 1214.892 kb on - strand, within HP15_1183at 1215.078 kb on + strand, within HP15_1183at 1215.271 kb on - strand, within HP15_1183

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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1,213,207 + HP15_1180 0.43 -1.1
1,213,275 - HP15_1180 0.52 +0.2
1,213,405 + HP15_1180 0.71 -0.8
1,213,423 - HP15_1180 0.74 +0.0
1,213,471 + HP15_1180 0.81 -2.7
1,213,479 - HP15_1180 0.82 +1.1
1,213,490 + HP15_1180 0.84 +0.8
1,213,509 - HP15_1180 0.86 +1.0
1,213,581 - +0.1
1,213,777 + +0.1
1,213,886 - +1.3
1,214,026 + -1.2
1,214,229 + HP15_1181 0.36 -1.1
1,214,570 - -0.5
1,214,646 - -1.2
1,214,646 - +0.1
1,214,865 + HP15_1183 0.11 -0.3
1,214,873 - HP15_1183 0.11 -1.0
1,214,892 - HP15_1183 0.12 -0.2
1,214,892 - HP15_1183 0.12 +0.7
1,215,078 + HP15_1183 0.19 +1.0
1,215,271 - HP15_1183 0.26 +1.5

Or see this region's nucleotide sequence