Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1152 and HP15_1153 are separated by 7 nucleotides HP15_1153 and HP15_1154 are separated by 82 nucleotides HP15_1154 and HP15_1155 are separated by 101 nucleotides
HP15_1152: HP15_1152 - conserved hypothetical protein, at 1,186,544 to 1,187,128
_1152
HP15_1153: HP15_1153 - conserved hypothetical protein containing DUF1853, at 1,187,136 to 1,188,032
_1153
HP15_1154: HP15_1154 - glyoxalase/bleomycin resistance protein/dioxygenase, at 1,188,115 to 1,188,537
_1154
HP15_1155: HP15_1155 - conserved hypothetical protein, at 1,188,639 to 1,190,063
_1155
Position (kb)
1188
1189 Strain fitness (log2 ratio)
-2
-1
0
1 at 1187.245 kb on + strand, within HP15_1153 at 1187.415 kb on - strand, within HP15_1153 at 1187.515 kb on - strand, within HP15_1153 at 1187.579 kb on - strand, within HP15_1153 at 1187.771 kb on - strand, within HP15_1153 at 1187.981 kb on - strand at 1187.994 kb on - strand at 1188.004 kb on - strand at 1188.080 kb on + strand at 1188.175 kb on + strand, within HP15_1154 at 1188.378 kb on + strand, within HP15_1154 at 1188.378 kb on + strand, within HP15_1154 at 1188.386 kb on - strand, within HP15_1154 at 1188.509 kb on - strand at 1188.538 kb on + strand at 1188.546 kb on - strand at 1188.546 kb on - strand at 1188.756 kb on + strand at 1188.808 kb on + strand, within HP15_1155 at 1188.814 kb on - strand, within HP15_1155 at 1188.851 kb on - strand, within HP15_1155 at 1189.114 kb on + strand, within HP15_1155 at 1189.204 kb on - strand, within HP15_1155 at 1189.257 kb on + strand, within HP15_1155 at 1189.299 kb on + strand, within HP15_1155 at 1189.327 kb on + strand, within HP15_1155 at 1189.367 kb on + strand, within HP15_1155 at 1189.388 kb on - strand, within HP15_1155 at 1189.458 kb on - strand, within HP15_1155 at 1189.476 kb on - strand, within HP15_1155 at 1189.476 kb on - strand, within HP15_1155
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 1,187,245 + HP15_1153 0.12 +0.3 1,187,415 - HP15_1153 0.31 +0.3 1,187,515 - HP15_1153 0.42 -1.2 1,187,579 - HP15_1153 0.49 -1.5 1,187,771 - HP15_1153 0.71 +0.2 1,187,981 - -0.5 1,187,994 - +0.6 1,188,004 - -1.0 1,188,080 + +0.2 1,188,175 + HP15_1154 0.14 +0.3 1,188,378 + HP15_1154 0.62 -0.9 1,188,378 + HP15_1154 0.62 -1.1 1,188,386 - HP15_1154 0.64 +0.0 1,188,509 - -1.7 1,188,538 + -0.7 1,188,546 - -0.0 1,188,546 - -1.0 1,188,756 + -0.7 1,188,808 + HP15_1155 0.12 -0.2 1,188,814 - HP15_1155 0.12 +0.5 1,188,851 - HP15_1155 0.15 -0.1 1,189,114 + HP15_1155 0.33 -2.4 1,189,204 - HP15_1155 0.40 +0.5 1,189,257 + HP15_1155 0.43 +0.5 1,189,299 + HP15_1155 0.46 -0.6 1,189,327 + HP15_1155 0.48 +0.4 1,189,367 + HP15_1155 0.51 +0.3 1,189,388 - HP15_1155 0.53 +1.2 1,189,458 - HP15_1155 0.57 -0.3 1,189,476 - HP15_1155 0.59 +1.0 1,189,476 - HP15_1155 0.59 -0.3
Or see this region's nucleotide sequence