Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1128 and HP15_1129 are separated by 98 nucleotides HP15_1129 and HP15_1130 are separated by 3 nucleotides HP15_1130 and HP15_1131 are separated by 60 nucleotides
HP15_1128: HP15_1128 - glutamate synthase domain protein, at 1,156,404 to 1,158,068
_1128
HP15_1129: HP15_1129 - hypothetical protein, at 1,158,167 to 1,158,304
_1129
HP15_1130: HP15_1130 - transporter, BCCT family protein, at 1,158,308 to 1,159,900
_1130
HP15_1131: HP15_1131 - alpha-L-glutamate ligase-like protein, at 1,159,961 to 1,160,869
_1131
Position (kb)
1158
1159
1160 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1157.358 kb on + strand, within HP15_1128 at 1157.405 kb on + strand, within HP15_1128 at 1157.405 kb on + strand, within HP15_1128 at 1157.413 kb on - strand, within HP15_1128 at 1157.413 kb on - strand, within HP15_1128 at 1157.413 kb on - strand, within HP15_1128 at 1157.441 kb on + strand, within HP15_1128 at 1157.785 kb on - strand, within HP15_1128 at 1157.790 kb on - strand, within HP15_1128 at 1157.832 kb on - strand, within HP15_1128 at 1157.894 kb on + strand, within HP15_1128 at 1157.966 kb on - strand at 1157.969 kb on + strand at 1157.969 kb on + strand at 1157.969 kb on + strand at 1157.969 kb on + strand at 1157.977 kb on - strand at 1157.977 kb on - strand at 1158.021 kb on - strand at 1158.112 kb on - strand at 1158.146 kb on - strand at 1158.378 kb on + strand at 1158.586 kb on + strand, within HP15_1130 at 1158.589 kb on - strand, within HP15_1130 at 1158.673 kb on - strand, within HP15_1130 at 1158.697 kb on + strand, within HP15_1130 at 1158.739 kb on - strand, within HP15_1130 at 1158.801 kb on - strand, within HP15_1130 at 1158.808 kb on - strand, within HP15_1130 at 1158.898 kb on - strand, within HP15_1130 at 1158.917 kb on + strand, within HP15_1130 at 1158.935 kb on - strand, within HP15_1130 at 1159.257 kb on - strand, within HP15_1130 at 1159.267 kb on - strand, within HP15_1130 at 1159.306 kb on + strand, within HP15_1130 at 1159.326 kb on - strand, within HP15_1130 at 1159.494 kb on + strand, within HP15_1130 at 1159.646 kb on + strand, within HP15_1130 at 1159.720 kb on + strand, within HP15_1130 at 1159.736 kb on + strand, within HP15_1130 at 1159.744 kb on - strand at 1159.758 kb on - strand at 1159.794 kb on + strand at 1159.807 kb on - strand at 1159.807 kb on - strand at 1159.896 kb on + strand at 1159.904 kb on - strand at 1160.007 kb on + strand at 1160.007 kb on + strand at 1160.015 kb on - strand at 1160.146 kb on + strand, within HP15_1131 at 1160.159 kb on - strand, within HP15_1131 at 1160.186 kb on + strand, within HP15_1131 at 1160.491 kb on - strand, within HP15_1131 at 1160.500 kb on + strand, within HP15_1131 at 1160.501 kb on + strand, within HP15_1131 at 1160.529 kb on - strand, within HP15_1131 at 1160.589 kb on - strand, within HP15_1131 at 1160.680 kb on - strand, within HP15_1131 at 1160.859 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 1,157,358 + HP15_1128 0.57 -2.4 1,157,405 + HP15_1128 0.60 -1.3 1,157,405 + HP15_1128 0.60 -1.9 1,157,413 - HP15_1128 0.61 -2.6 1,157,413 - HP15_1128 0.61 -2.3 1,157,413 - HP15_1128 0.61 +0.3 1,157,441 + HP15_1128 0.62 -1.4 1,157,785 - HP15_1128 0.83 -0.5 1,157,790 - HP15_1128 0.83 -2.5 1,157,832 - HP15_1128 0.86 -0.4 1,157,894 + HP15_1128 0.89 -3.9 1,157,966 - -1.1 1,157,969 + -3.6 1,157,969 + -3.8 1,157,969 + -2.3 1,157,969 + -2.9 1,157,977 - -2.7 1,157,977 - -2.1 1,158,021 - -2.7 1,158,112 - -1.6 1,158,146 - -1.1 1,158,378 + +2.4 1,158,586 + HP15_1130 0.17 +1.7 1,158,589 - HP15_1130 0.18 +2.2 1,158,673 - HP15_1130 0.23 +2.6 1,158,697 + HP15_1130 0.24 +2.3 1,158,739 - HP15_1130 0.27 +2.1 1,158,801 - HP15_1130 0.31 +3.0 1,158,808 - HP15_1130 0.31 +2.4 1,158,898 - HP15_1130 0.37 +2.8 1,158,917 + HP15_1130 0.38 +2.7 1,158,935 - HP15_1130 0.39 +2.9 1,159,257 - HP15_1130 0.60 +2.6 1,159,267 - HP15_1130 0.60 +1.4 1,159,306 + HP15_1130 0.63 +2.6 1,159,326 - HP15_1130 0.64 +2.7 1,159,494 + HP15_1130 0.74 +2.5 1,159,646 + HP15_1130 0.84 +2.6 1,159,720 + HP15_1130 0.89 +2.8 1,159,736 + HP15_1130 0.90 +3.0 1,159,744 - +2.9 1,159,758 - +2.4 1,159,794 + +2.7 1,159,807 - +1.3 1,159,807 - +1.9 1,159,896 + +0.9 1,159,904 - +1.7 1,160,007 + -1.7 1,160,007 + -1.3 1,160,015 - +0.6 1,160,146 + HP15_1131 0.20 -1.9 1,160,159 - HP15_1131 0.22 -0.4 1,160,186 + HP15_1131 0.25 -1.2 1,160,491 - HP15_1131 0.58 +0.3 1,160,500 + HP15_1131 0.59 -1.1 1,160,501 + HP15_1131 0.59 +1.7 1,160,529 - HP15_1131 0.62 -0.5 1,160,589 - HP15_1131 0.69 +0.7 1,160,680 - HP15_1131 0.79 -0.7 1,160,859 + -0.1
Or see this region's nucleotide sequence