Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1072 and Psest_1073 are separated by 16 nucleotides Psest_1073 and Psest_1074 are separated by 172 nucleotides
Psest_1072: Psest_1072 - TRAP transporter, DctM subunit, at 1,160,331 to 1,161,701
_1072
Psest_1073: Psest_1073 - TRAP-type mannitol/chloroaromatic compound transport system, small permease component, at 1,161,718 to 1,162,320
_1073
Psest_1074: Psest_1074 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,162,493 to 1,163,578
_1074
Position (kb)
1161
1162
1163 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1161.073 kb on + strand, within Psest_1072 at 1161.073 kb on + strand, within Psest_1072 at 1161.073 kb on + strand, within Psest_1072 at 1161.073 kb on + strand, within Psest_1072 at 1161.074 kb on - strand, within Psest_1072 at 1161.074 kb on - strand, within Psest_1072 at 1161.074 kb on - strand, within Psest_1072 at 1161.074 kb on - strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.082 kb on + strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.083 kb on - strand, within Psest_1072 at 1161.253 kb on + strand, within Psest_1072 at 1161.254 kb on - strand, within Psest_1072 at 1161.543 kb on - strand, within Psest_1072 at 1161.580 kb on + strand at 1161.580 kb on + strand at 1161.711 kb on + strand at 1161.911 kb on + strand, within Psest_1073 at 1161.912 kb on - strand, within Psest_1073 at 1161.917 kb on + strand, within Psest_1073 at 1161.926 kb on + strand, within Psest_1073 at 1161.926 kb on + strand, within Psest_1073 at 1161.926 kb on + strand, within Psest_1073 at 1162.036 kb on + strand, within Psest_1073 at 1162.036 kb on + strand, within Psest_1073 at 1162.180 kb on + strand, within Psest_1073 at 1162.260 kb on + strand at 1162.260 kb on + strand at 1162.260 kb on + strand at 1162.268 kb on + strand at 1162.349 kb on + strand at 1162.349 kb on + strand at 1162.349 kb on + strand at 1162.349 kb on + strand at 1162.350 kb on - strand at 1162.397 kb on - strand at 1162.500 kb on + strand at 1162.500 kb on + strand at 1162.500 kb on + strand at 1162.501 kb on - strand at 1162.501 kb on - strand at 1162.506 kb on + strand at 1162.506 kb on + strand at 1162.506 kb on + strand at 1162.507 kb on - strand at 1162.507 kb on - strand at 1162.507 kb on - strand at 1162.507 kb on - strand at 1162.507 kb on - strand at 1162.525 kb on - strand at 1162.581 kb on - strand at 1162.872 kb on + strand, within Psest_1074 at 1162.872 kb on + strand, within Psest_1074 at 1162.872 kb on + strand, within Psest_1074 at 1162.873 kb on - strand, within Psest_1074 at 1162.965 kb on + strand, within Psest_1074 at 1162.965 kb on + strand, within Psest_1074 at 1162.965 kb on + strand, within Psest_1074 at 1162.965 kb on + strand, within Psest_1074 at 1162.966 kb on - strand, within Psest_1074 at 1162.966 kb on - strand, within Psest_1074 at 1162.966 kb on - strand, within Psest_1074 at 1163.003 kb on + strand, within Psest_1074 at 1163.151 kb on + strand, within Psest_1074 at 1163.151 kb on + strand, within Psest_1074 at 1163.152 kb on - strand, within Psest_1074 at 1163.188 kb on - strand, within Psest_1074 at 1163.188 kb on - strand, within Psest_1074 at 1163.188 kb on - strand, within Psest_1074 at 1163.191 kb on - strand, within Psest_1074 at 1163.191 kb on - strand, within Psest_1074 at 1163.191 kb on - strand, within Psest_1074 at 1163.238 kb on + strand, within Psest_1074 at 1163.287 kb on - strand, within Psest_1074
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 1,161,073 + Psest_1072 0.54 -0.4 1,161,073 + Psest_1072 0.54 -0.7 1,161,073 + Psest_1072 0.54 -0.8 1,161,073 + Psest_1072 0.54 +0.4 1,161,074 - Psest_1072 0.54 -0.0 1,161,074 - Psest_1072 0.54 +0.7 1,161,074 - Psest_1072 0.54 -1.2 1,161,074 - Psest_1072 0.54 +0.1 1,161,082 + Psest_1072 0.55 +0.2 1,161,082 + Psest_1072 0.55 +0.0 1,161,082 + Psest_1072 0.55 -0.6 1,161,082 + Psest_1072 0.55 -0.8 1,161,082 + Psest_1072 0.55 +0.7 1,161,082 + Psest_1072 0.55 -1.3 1,161,082 + Psest_1072 0.55 +0.2 1,161,082 + Psest_1072 0.55 -0.1 1,161,082 + Psest_1072 0.55 +0.1 1,161,082 + Psest_1072 0.55 -2.2 1,161,082 + Psest_1072 0.55 +0.6 1,161,082 + Psest_1072 0.55 -0.8 1,161,083 - Psest_1072 0.55 +0.1 1,161,083 - Psest_1072 0.55 -1.8 1,161,083 - Psest_1072 0.55 -0.1 1,161,083 - Psest_1072 0.55 -1.2 1,161,083 - Psest_1072 0.55 +1.3 1,161,083 - Psest_1072 0.55 -0.5 1,161,083 - Psest_1072 0.55 +0.3 1,161,083 - Psest_1072 0.55 +1.0 1,161,083 - Psest_1072 0.55 +0.3 1,161,083 - Psest_1072 0.55 -0.0 1,161,083 - Psest_1072 0.55 +0.6 1,161,083 - Psest_1072 0.55 -0.2 1,161,083 - Psest_1072 0.55 +0.4 1,161,083 - Psest_1072 0.55 -0.5 1,161,083 - Psest_1072 0.55 -0.3 1,161,253 + Psest_1072 0.67 +0.4 1,161,254 - Psest_1072 0.67 -0.5 1,161,543 - Psest_1072 0.88 -0.0 1,161,580 + +0.2 1,161,580 + +1.0 1,161,711 + -0.4 1,161,911 + Psest_1073 0.32 +1.0 1,161,912 - Psest_1073 0.32 +1.6 1,161,917 + Psest_1073 0.33 +0.4 1,161,926 + Psest_1073 0.34 -1.6 1,161,926 + Psest_1073 0.34 -0.3 1,161,926 + Psest_1073 0.34 -0.8 1,162,036 + Psest_1073 0.53 +1.0 1,162,036 + Psest_1073 0.53 -0.6 1,162,180 + Psest_1073 0.77 -1.0 1,162,260 + -0.2 1,162,260 + -0.4 1,162,260 + +0.7 1,162,268 + -0.3 1,162,349 + -0.2 1,162,349 + -0.5 1,162,349 + -1.8 1,162,349 + -0.0 1,162,350 - -0.1 1,162,397 - -0.7 1,162,500 + +0.5 1,162,500 + -0.3 1,162,500 + +0.5 1,162,501 - -1.2 1,162,501 - -2.9 1,162,506 + -0.3 1,162,506 + -1.6 1,162,506 + -0.6 1,162,507 - -1.0 1,162,507 - -0.3 1,162,507 - +1.0 1,162,507 - -1.3 1,162,507 - +0.6 1,162,525 - -0.3 1,162,581 - +0.7 1,162,872 + Psest_1074 0.35 -0.8 1,162,872 + Psest_1074 0.35 -0.0 1,162,872 + Psest_1074 0.35 -0.0 1,162,873 - Psest_1074 0.35 -0.9 1,162,965 + Psest_1074 0.43 -0.3 1,162,965 + Psest_1074 0.43 -1.1 1,162,965 + Psest_1074 0.43 -1.3 1,162,965 + Psest_1074 0.43 +0.6 1,162,966 - Psest_1074 0.44 -2.0 1,162,966 - Psest_1074 0.44 -0.6 1,162,966 - Psest_1074 0.44 -0.1 1,163,003 + Psest_1074 0.47 -1.1 1,163,151 + Psest_1074 0.61 -0.9 1,163,151 + Psest_1074 0.61 +0.4 1,163,152 - Psest_1074 0.61 +1.5 1,163,188 - Psest_1074 0.64 -1.8 1,163,188 - Psest_1074 0.64 -0.3 1,163,188 - Psest_1074 0.64 +1.0 1,163,191 - Psest_1074 0.64 +0.3 1,163,191 - Psest_1074 0.64 +1.0 1,163,191 - Psest_1074 0.64 -1.2 1,163,238 + Psest_1074 0.69 +3.0 1,163,287 - Psest_1074 0.73 -0.7
Or see this region's nucleotide sequence