Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1073

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1072 and Psest_1073 are separated by 16 nucleotidesPsest_1073 and Psest_1074 are separated by 172 nucleotides Psest_1072: Psest_1072 - TRAP transporter, DctM subunit, at 1,160,331 to 1,161,701 _1072 Psest_1073: Psest_1073 - TRAP-type mannitol/chloroaromatic compound transport system, small permease component, at 1,161,718 to 1,162,320 _1073 Psest_1074: Psest_1074 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,162,493 to 1,163,578 _1074 Position (kb) 1161 1162 1163Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1161.073 kb on + strand, within Psest_1072at 1161.073 kb on + strand, within Psest_1072at 1161.073 kb on + strand, within Psest_1072at 1161.073 kb on + strand, within Psest_1072at 1161.074 kb on - strand, within Psest_1072at 1161.074 kb on - strand, within Psest_1072at 1161.074 kb on - strand, within Psest_1072at 1161.074 kb on - strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.082 kb on + strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.083 kb on - strand, within Psest_1072at 1161.253 kb on + strand, within Psest_1072at 1161.254 kb on - strand, within Psest_1072at 1161.543 kb on - strand, within Psest_1072at 1161.580 kb on + strandat 1161.580 kb on + strandat 1161.711 kb on + strandat 1161.911 kb on + strand, within Psest_1073at 1161.912 kb on - strand, within Psest_1073at 1161.917 kb on + strand, within Psest_1073at 1161.926 kb on + strand, within Psest_1073at 1161.926 kb on + strand, within Psest_1073at 1161.926 kb on + strand, within Psest_1073at 1162.036 kb on + strand, within Psest_1073at 1162.036 kb on + strand, within Psest_1073at 1162.180 kb on + strand, within Psest_1073at 1162.260 kb on + strandat 1162.260 kb on + strandat 1162.260 kb on + strandat 1162.268 kb on + strandat 1162.349 kb on + strandat 1162.349 kb on + strandat 1162.349 kb on + strandat 1162.349 kb on + strandat 1162.350 kb on - strandat 1162.397 kb on - strandat 1162.500 kb on + strandat 1162.500 kb on + strandat 1162.500 kb on + strandat 1162.501 kb on - strandat 1162.501 kb on - strandat 1162.506 kb on + strandat 1162.506 kb on + strandat 1162.506 kb on + strandat 1162.507 kb on - strandat 1162.507 kb on - strandat 1162.507 kb on - strandat 1162.507 kb on - strandat 1162.507 kb on - strandat 1162.525 kb on - strandat 1162.581 kb on - strandat 1162.872 kb on + strand, within Psest_1074at 1162.872 kb on + strand, within Psest_1074at 1162.872 kb on + strand, within Psest_1074at 1162.873 kb on - strand, within Psest_1074at 1162.965 kb on + strand, within Psest_1074at 1162.965 kb on + strand, within Psest_1074at 1162.965 kb on + strand, within Psest_1074at 1162.965 kb on + strand, within Psest_1074at 1162.966 kb on - strand, within Psest_1074at 1162.966 kb on - strand, within Psest_1074at 1162.966 kb on - strand, within Psest_1074at 1163.003 kb on + strand, within Psest_1074at 1163.151 kb on + strand, within Psest_1074at 1163.151 kb on + strand, within Psest_1074at 1163.152 kb on - strand, within Psest_1074at 1163.188 kb on - strand, within Psest_1074at 1163.188 kb on - strand, within Psest_1074at 1163.188 kb on - strand, within Psest_1074at 1163.191 kb on - strand, within Psest_1074at 1163.191 kb on - strand, within Psest_1074at 1163.191 kb on - strand, within Psest_1074at 1163.238 kb on + strand, within Psest_1074at 1163.287 kb on - strand, within Psest_1074

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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1,161,073 + Psest_1072 0.54 -0.4
1,161,073 + Psest_1072 0.54 -0.7
1,161,073 + Psest_1072 0.54 -0.8
1,161,073 + Psest_1072 0.54 +0.4
1,161,074 - Psest_1072 0.54 -0.0
1,161,074 - Psest_1072 0.54 +0.7
1,161,074 - Psest_1072 0.54 -1.2
1,161,074 - Psest_1072 0.54 +0.1
1,161,082 + Psest_1072 0.55 +0.2
1,161,082 + Psest_1072 0.55 +0.0
1,161,082 + Psest_1072 0.55 -0.6
1,161,082 + Psest_1072 0.55 -0.8
1,161,082 + Psest_1072 0.55 +0.7
1,161,082 + Psest_1072 0.55 -1.3
1,161,082 + Psest_1072 0.55 +0.2
1,161,082 + Psest_1072 0.55 -0.1
1,161,082 + Psest_1072 0.55 +0.1
1,161,082 + Psest_1072 0.55 -2.2
1,161,082 + Psest_1072 0.55 +0.6
1,161,082 + Psest_1072 0.55 -0.8
1,161,083 - Psest_1072 0.55 +0.1
1,161,083 - Psest_1072 0.55 -1.8
1,161,083 - Psest_1072 0.55 -0.1
1,161,083 - Psest_1072 0.55 -1.2
1,161,083 - Psest_1072 0.55 +1.3
1,161,083 - Psest_1072 0.55 -0.5
1,161,083 - Psest_1072 0.55 +0.3
1,161,083 - Psest_1072 0.55 +1.0
1,161,083 - Psest_1072 0.55 +0.3
1,161,083 - Psest_1072 0.55 -0.0
1,161,083 - Psest_1072 0.55 +0.6
1,161,083 - Psest_1072 0.55 -0.2
1,161,083 - Psest_1072 0.55 +0.4
1,161,083 - Psest_1072 0.55 -0.5
1,161,083 - Psest_1072 0.55 -0.3
1,161,253 + Psest_1072 0.67 +0.4
1,161,254 - Psest_1072 0.67 -0.5
1,161,543 - Psest_1072 0.88 -0.0
1,161,580 + +0.2
1,161,580 + +1.0
1,161,711 + -0.4
1,161,911 + Psest_1073 0.32 +1.0
1,161,912 - Psest_1073 0.32 +1.6
1,161,917 + Psest_1073 0.33 +0.4
1,161,926 + Psest_1073 0.34 -1.6
1,161,926 + Psest_1073 0.34 -0.3
1,161,926 + Psest_1073 0.34 -0.8
1,162,036 + Psest_1073 0.53 +1.0
1,162,036 + Psest_1073 0.53 -0.6
1,162,180 + Psest_1073 0.77 -1.0
1,162,260 + -0.2
1,162,260 + -0.4
1,162,260 + +0.7
1,162,268 + -0.3
1,162,349 + -0.2
1,162,349 + -0.5
1,162,349 + -1.8
1,162,349 + -0.0
1,162,350 - -0.1
1,162,397 - -0.7
1,162,500 + +0.5
1,162,500 + -0.3
1,162,500 + +0.5
1,162,501 - -1.2
1,162,501 - -2.9
1,162,506 + -0.3
1,162,506 + -1.6
1,162,506 + -0.6
1,162,507 - -1.0
1,162,507 - -0.3
1,162,507 - +1.0
1,162,507 - -1.3
1,162,507 - +0.6
1,162,525 - -0.3
1,162,581 - +0.7
1,162,872 + Psest_1074 0.35 -0.8
1,162,872 + Psest_1074 0.35 -0.0
1,162,872 + Psest_1074 0.35 -0.0
1,162,873 - Psest_1074 0.35 -0.9
1,162,965 + Psest_1074 0.43 -0.3
1,162,965 + Psest_1074 0.43 -1.1
1,162,965 + Psest_1074 0.43 -1.3
1,162,965 + Psest_1074 0.43 +0.6
1,162,966 - Psest_1074 0.44 -2.0
1,162,966 - Psest_1074 0.44 -0.6
1,162,966 - Psest_1074 0.44 -0.1
1,163,003 + Psest_1074 0.47 -1.1
1,163,151 + Psest_1074 0.61 -0.9
1,163,151 + Psest_1074 0.61 +0.4
1,163,152 - Psest_1074 0.61 +1.5
1,163,188 - Psest_1074 0.64 -1.8
1,163,188 - Psest_1074 0.64 -0.3
1,163,188 - Psest_1074 0.64 +1.0
1,163,191 - Psest_1074 0.64 +0.3
1,163,191 - Psest_1074 0.64 +1.0
1,163,191 - Psest_1074 0.64 -1.2
1,163,238 + Psest_1074 0.69 +3.0
1,163,287 - Psest_1074 0.73 -0.7

Or see this region's nucleotide sequence