Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1022 and Psest_1023 are separated by 22 nucleotides Psest_1023 and Psest_1024 are separated by 133 nucleotides Psest_1024 and Psest_1025 overlap by 1 nucleotides Psest_1025 and Psest_1026 are separated by 11 nucleotides
Psest_1022: Psest_1022 - Thiol:disulfide interchange protein, at 1,108,257 to 1,110,068
_1022
Psest_1023: Psest_1023 - Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases, at 1,110,091 to 1,110,426
_1023
Psest_1024: Psest_1024 - ABC-type Fe3+-siderophore transport system, permease component, at 1,110,560 to 1,111,597
_1024
Psest_1025: Psest_1025 - ABC-type hemin transport system, ATPase component, at 1,111,597 to 1,112,364
_1025
Psest_1026: Psest_1026 - Uncharacterized iron-regulated protein, at 1,112,376 to 1,113,260
_1026
Position (kb)
1110
1111
1112 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1109.707 kb on + strand, within Psest_1022 at 1109.707 kb on + strand, within Psest_1022 at 1109.708 kb on - strand, within Psest_1022 at 1109.708 kb on - strand, within Psest_1022 at 1109.708 kb on - strand, within Psest_1022 at 1109.708 kb on - strand, within Psest_1022 at 1109.708 kb on - strand, within Psest_1022 at 1109.824 kb on + strand, within Psest_1022 at 1109.824 kb on + strand, within Psest_1022 at 1109.824 kb on + strand, within Psest_1022 at 1109.825 kb on - strand, within Psest_1022 at 1109.825 kb on - strand, within Psest_1022 at 1109.825 kb on - strand, within Psest_1022 at 1109.825 kb on - strand, within Psest_1022 at 1109.825 kb on - strand, within Psest_1022 at 1109.825 kb on - strand, within Psest_1022 at 1109.825 kb on - strand, within Psest_1022 at 1109.827 kb on + strand, within Psest_1022 at 1109.827 kb on + strand, within Psest_1022 at 1109.828 kb on - strand, within Psest_1022 at 1110.044 kb on - strand at 1110.062 kb on + strand at 1110.317 kb on + strand, within Psest_1023 at 1110.416 kb on - strand at 1110.538 kb on + strand at 1110.950 kb on + strand, within Psest_1024 at 1110.950 kb on + strand, within Psest_1024 at 1110.950 kb on + strand, within Psest_1024 at 1110.951 kb on - strand, within Psest_1024 at 1111.005 kb on - strand, within Psest_1024 at 1111.106 kb on + strand, within Psest_1024 at 1111.106 kb on + strand, within Psest_1024 at 1111.106 kb on + strand, within Psest_1024 at 1111.106 kb on + strand, within Psest_1024 at 1111.107 kb on - strand, within Psest_1024 at 1111.175 kb on + strand, within Psest_1024 at 1111.175 kb on + strand, within Psest_1024 at 1111.175 kb on + strand, within Psest_1024 at 1111.175 kb on + strand, within Psest_1024 at 1111.175 kb on + strand, within Psest_1024 at 1111.175 kb on + strand, within Psest_1024 at 1111.176 kb on - strand, within Psest_1024 at 1111.176 kb on - strand, within Psest_1024 at 1111.176 kb on - strand, within Psest_1024 at 1111.179 kb on + strand, within Psest_1024 at 1111.179 kb on + strand, within Psest_1024 at 1111.179 kb on + strand, within Psest_1024 at 1111.179 kb on + strand, within Psest_1024 at 1111.179 kb on + strand, within Psest_1024 at 1111.180 kb on - strand, within Psest_1024 at 1111.180 kb on - strand, within Psest_1024 at 1111.180 kb on - strand, within Psest_1024 at 1111.180 kb on - strand, within Psest_1024 at 1111.263 kb on + strand, within Psest_1024 at 1111.263 kb on + strand, within Psest_1024 at 1111.263 kb on + strand, within Psest_1024 at 1111.263 kb on + strand, within Psest_1024 at 1111.264 kb on - strand, within Psest_1024 at 1111.264 kb on - strand, within Psest_1024 at 1111.264 kb on - strand, within Psest_1024 at 1111.416 kb on + strand, within Psest_1024 at 1111.417 kb on - strand, within Psest_1024 at 1111.572 kb on - strand at 1111.572 kb on - strand at 1111.618 kb on - strand at 1111.808 kb on + strand, within Psest_1025 at 1111.808 kb on + strand, within Psest_1025 at 1111.808 kb on + strand, within Psest_1025 at 1111.809 kb on - strand, within Psest_1025 at 1111.983 kb on + strand, within Psest_1025 at 1111.983 kb on + strand, within Psest_1025 at 1111.983 kb on + strand, within Psest_1025 at 1111.983 kb on + strand, within Psest_1025 at 1111.983 kb on + strand, within Psest_1025 at 1111.984 kb on - strand, within Psest_1025 at 1111.984 kb on - strand, within Psest_1025 at 1111.984 kb on - strand, within Psest_1025 at 1111.984 kb on - strand, within Psest_1025 at 1111.987 kb on + strand, within Psest_1025 at 1112.072 kb on + strand, within Psest_1025 at 1112.072 kb on + strand, within Psest_1025 at 1112.072 kb on + strand, within Psest_1025 at 1112.073 kb on - strand, within Psest_1025 at 1112.073 kb on - strand, within Psest_1025 at 1112.073 kb on - strand, within Psest_1025 at 1112.075 kb on + strand, within Psest_1025 at 1112.389 kb on + strand at 1112.389 kb on + strand at 1112.390 kb on - strand at 1112.390 kb on - strand at 1112.390 kb on - strand at 1112.516 kb on + strand, within Psest_1026 at 1112.516 kb on + strand, within Psest_1026 at 1112.550 kb on + strand, within Psest_1026 at 1112.551 kb on - strand, within Psest_1026
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 1,109,707 + Psest_1022 0.80 -2.0 1,109,707 + Psest_1022 0.80 -1.3 1,109,708 - Psest_1022 0.80 -1.2 1,109,708 - Psest_1022 0.80 -1.7 1,109,708 - Psest_1022 0.80 +0.3 1,109,708 - Psest_1022 0.80 -2.9 1,109,708 - Psest_1022 0.80 +1.1 1,109,824 + Psest_1022 0.86 -1.8 1,109,824 + Psest_1022 0.86 +0.1 1,109,824 + Psest_1022 0.86 -0.9 1,109,825 - Psest_1022 0.87 -0.9 1,109,825 - Psest_1022 0.87 -1.6 1,109,825 - Psest_1022 0.87 -0.9 1,109,825 - Psest_1022 0.87 -0.4 1,109,825 - Psest_1022 0.87 -2.4 1,109,825 - Psest_1022 0.87 -2.2 1,109,825 - Psest_1022 0.87 -1.5 1,109,827 + Psest_1022 0.87 +1.1 1,109,827 + Psest_1022 0.87 -0.5 1,109,828 - Psest_1022 0.87 -1.7 1,110,044 - -2.2 1,110,062 + +1.1 1,110,317 + Psest_1023 0.67 +0.1 1,110,416 - +0.1 1,110,538 + -0.4 1,110,950 + Psest_1024 0.38 -2.4 1,110,950 + Psest_1024 0.38 +1.1 1,110,950 + Psest_1024 0.38 -0.4 1,110,951 - Psest_1024 0.38 +1.0 1,111,005 - Psest_1024 0.43 +1.4 1,111,106 + Psest_1024 0.53 -0.3 1,111,106 + Psest_1024 0.53 +0.9 1,111,106 + Psest_1024 0.53 +1.0 1,111,106 + Psest_1024 0.53 -1.7 1,111,107 - Psest_1024 0.53 +1.9 1,111,175 + Psest_1024 0.59 -1.7 1,111,175 + Psest_1024 0.59 -1.3 1,111,175 + Psest_1024 0.59 -3.1 1,111,175 + Psest_1024 0.59 -1.2 1,111,175 + Psest_1024 0.59 -1.9 1,111,175 + Psest_1024 0.59 +0.7 1,111,176 - Psest_1024 0.59 -0.4 1,111,176 - Psest_1024 0.59 -0.3 1,111,176 - Psest_1024 0.59 -2.2 1,111,179 + Psest_1024 0.60 -0.8 1,111,179 + Psest_1024 0.60 -0.6 1,111,179 + Psest_1024 0.60 -1.8 1,111,179 + Psest_1024 0.60 -1.3 1,111,179 + Psest_1024 0.60 -1.0 1,111,180 - Psest_1024 0.60 +1.1 1,111,180 - Psest_1024 0.60 +0.1 1,111,180 - Psest_1024 0.60 -2.4 1,111,180 - Psest_1024 0.60 +2.0 1,111,263 + Psest_1024 0.68 -1.1 1,111,263 + Psest_1024 0.68 -0.7 1,111,263 + Psest_1024 0.68 -1.3 1,111,263 + Psest_1024 0.68 -2.3 1,111,264 - Psest_1024 0.68 -0.6 1,111,264 - Psest_1024 0.68 -0.4 1,111,264 - Psest_1024 0.68 -2.4 1,111,416 + Psest_1024 0.82 -0.9 1,111,417 - Psest_1024 0.83 -2.0 1,111,572 - +0.9 1,111,572 - -1.3 1,111,618 - +1.3 1,111,808 + Psest_1025 0.27 +1.1 1,111,808 + Psest_1025 0.27 -1.0 1,111,808 + Psest_1025 0.27 -0.0 1,111,809 - Psest_1025 0.28 -1.1 1,111,983 + Psest_1025 0.50 -0.2 1,111,983 + Psest_1025 0.50 +0.5 1,111,983 + Psest_1025 0.50 +0.1 1,111,983 + Psest_1025 0.50 +1.3 1,111,983 + Psest_1025 0.50 +1.1 1,111,984 - Psest_1025 0.50 -1.7 1,111,984 - Psest_1025 0.50 +0.3 1,111,984 - Psest_1025 0.50 +1.1 1,111,984 - Psest_1025 0.50 -1.7 1,111,987 + Psest_1025 0.51 -1.9 1,112,072 + Psest_1025 0.62 -1.2 1,112,072 + Psest_1025 0.62 +1.3 1,112,072 + Psest_1025 0.62 +0.3 1,112,073 - Psest_1025 0.62 +0.4 1,112,073 - Psest_1025 0.62 +1.3 1,112,073 - Psest_1025 0.62 +0.3 1,112,075 + Psest_1025 0.62 +1.6 1,112,389 + +0.1 1,112,389 + -1.7 1,112,390 - -2.2 1,112,390 - -1.7 1,112,390 - -0.3 1,112,516 + Psest_1026 0.16 -0.7 1,112,516 + Psest_1026 0.16 +0.9 1,112,550 + Psest_1026 0.20 +0.9 1,112,551 - Psest_1026 0.20 +0.4
Or see this region's nucleotide sequence