Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0795 and Psest_0796 overlap by 4 nucleotides Psest_0796 and Psest_0797 are separated by 25 nucleotides Psest_0797 and Psest_0798 are separated by 45 nucleotides Psest_0798 and Psest_0799 are separated by 322 nucleotides
Psest_0795: Psest_0795 - ABC-type multidrug transport system, ATPase component, at 870,523 to 871,449
_0795
Psest_0796: Psest_0796 - ABC-type transport system involved in multi-copper enzyme maturation, permease component, at 871,446 to 872,276
_0796
Psest_0797: Psest_0797 - Predicted lipoprotein involved in nitrous oxide reduction, at 872,302 to 872,874
_0797
Psest_0798: Psest_0798 - twin arginine-targeting protein translocase, TatA/E family, at 872,920 to 873,102
_0798
Psest_0799: Psest_0799 - Uncharacterized protein involved in response to NO, at 873,425 to 874,615
_0799
Position (kb) 872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 871.399 kb on + strand at 871.400 kb on - strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.402 kb on + strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.403 kb on - strand at 871.668 kb on + strand, within Psest_0796 at 871.722 kb on + strand, within Psest_0796 at 871.929 kb on + strand, within Psest_0796 at 871.929 kb on + strand, within Psest_0796 at 871.930 kb on - strand, within Psest_0796 at 871.930 kb on - strand, within Psest_0796 at 871.930 kb on - strand, within Psest_0796 at 872.107 kb on - strand, within Psest_0796 at 872.302 kb on - strand at 872.302 kb on - strand at 872.302 kb on - strand at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.653 kb on + strand, within Psest_0797 at 872.653 kb on + strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.912 kb on - strand at 872.928 kb on + strand at 873.100 kb on + strand at 873.100 kb on + strand at 873.101 kb on - strand at 873.191 kb on - strand at 873.270 kb on + strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.320 kb on + strand at 873.320 kb on + strand at 873.320 kb on + strand at 873.328 kb on - strand at 873.334 kb on + strand at 873.334 kb on + strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.351 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.432 kb on + strand at 873.432 kb on + strand at 873.433 kb on - strand at 873.457 kb on + strand at 873.853 kb on + strand, within Psest_0799 at 873.853 kb on + strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 871,399 + -0.2 871,400 - -0.1 871,402 + +0.6 871,402 + +1.7 871,402 + -0.5 871,402 + +1.6 871,402 + -1.4 871,402 + -1.0 871,402 + -3.6 871,403 - +0.0 871,403 - +1.2 871,403 - -1.1 871,403 - -0.6 871,403 - -1.8 871,403 - -1.3 871,403 - +0.3 871,403 - +0.5 871,668 + Psest_0796 0.27 -1.4 871,722 + Psest_0796 0.33 -0.1 871,929 + Psest_0796 0.58 -1.1 871,929 + Psest_0796 0.58 -2.3 871,930 - Psest_0796 0.58 +0.1 871,930 - Psest_0796 0.58 +0.6 871,930 - Psest_0796 0.58 -0.4 872,107 - Psest_0796 0.80 -2.3 872,302 - +1.6 872,302 - +0.3 872,302 - +3.0 872,581 + Psest_0797 0.49 -0.2 872,581 + Psest_0797 0.49 +1.9 872,581 + Psest_0797 0.49 -0.8 872,581 + Psest_0797 0.49 -1.4 872,581 + Psest_0797 0.49 -2.4 872,582 - Psest_0797 0.49 +0.6 872,582 - Psest_0797 0.49 +1.0 872,582 - Psest_0797 0.49 +0.2 872,582 - Psest_0797 0.49 -0.3 872,653 + Psest_0797 0.61 -0.4 872,653 + Psest_0797 0.61 -0.1 872,654 - Psest_0797 0.61 +0.8 872,654 - Psest_0797 0.61 -1.5 872,654 - Psest_0797 0.61 -0.4 872,654 - Psest_0797 0.61 -0.8 872,654 - Psest_0797 0.61 -0.4 872,656 + Psest_0797 0.62 -1.8 872,656 + Psest_0797 0.62 +0.0 872,656 + Psest_0797 0.62 -0.4 872,656 + Psest_0797 0.62 +1.5 872,656 + Psest_0797 0.62 -2.0 872,656 + Psest_0797 0.62 -2.5 872,656 + Psest_0797 0.62 +1.0 872,656 + Psest_0797 0.62 -3.6 872,656 + Psest_0797 0.62 -0.8 872,656 + Psest_0797 0.62 +1.4 872,657 - Psest_0797 0.62 -2.0 872,657 - Psest_0797 0.62 +2.3 872,657 - Psest_0797 0.62 -0.1 872,657 - Psest_0797 0.62 -0.0 872,657 - Psest_0797 0.62 +1.2 872,657 - Psest_0797 0.62 -0.3 872,657 - Psest_0797 0.62 -1.1 872,657 - Psest_0797 0.62 -0.4 872,657 - Psest_0797 0.62 -1.4 872,657 - Psest_0797 0.62 -1.1 872,657 - Psest_0797 0.62 -0.2 872,657 - Psest_0797 0.62 -2.0 872,657 - Psest_0797 0.62 +0.2 872,657 - Psest_0797 0.62 +1.0 872,657 - Psest_0797 0.62 -2.7 872,657 - Psest_0797 0.62 -2.0 872,912 - -0.5 872,928 + +0.5 873,100 + +1.1 873,100 + -2.5 873,101 - -2.5 873,191 - +0.5 873,270 + -0.8 873,271 - -1.5 873,271 - -2.4 873,271 - -1.4 873,320 + +0.5 873,320 + +1.2 873,320 + -1.4 873,328 - +0.6 873,334 + -2.9 873,334 + -2.0 873,335 - +2.5 873,335 - +2.5 873,335 - -0.4 873,335 - -0.6 873,335 - +0.6 873,335 - -0.2 873,351 + +0.8 873,388 + -0.1 873,388 + -0.8 873,388 + -1.6 873,388 + -0.5 873,389 - -2.6 873,389 - -1.0 873,389 - +0.4 873,389 - -3.4 873,432 + -0.1 873,432 + -1.4 873,433 - -3.4 873,457 + +0.5 873,853 + Psest_0799 0.36 +0.2 873,853 + Psest_0799 0.36 +0.8 873,854 - Psest_0799 0.36 +0.4 873,854 - Psest_0799 0.36 -2.7
Or see this region's nucleotide sequence