Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0775

Experiment: Polymyxin B sulfate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0774 and Psest_0775 are separated by 290 nucleotidesPsest_0775 and Psest_0776 are separated by 64 nucleotidesPsest_0776 and Psest_0777 are separated by 4 nucleotides Psest_0774: Psest_0774 - cytosine permease (from data), at 842,614 to 843,891 _0774 Psest_0775: Psest_0775 - Catalase, at 844,182 to 845,720 _0775 Psest_0776: Psest_0776 - FOG: Ankyrin repeat, at 845,785 to 846,339 _0776 Psest_0777: Psest_0777 - cyanate hydratase, at 846,344 to 846,793 _0777 Position (kb) 844 845 846Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 843.385 kb on + strand, within Psest_0774at 843.385 kb on + strand, within Psest_0774at 843.560 kb on + strand, within Psest_0774at 843.568 kb on + strand, within Psest_0774at 843.568 kb on + strand, within Psest_0774at 843.569 kb on - strand, within Psest_0774at 843.689 kb on + strand, within Psest_0774at 843.689 kb on + strand, within Psest_0774at 843.689 kb on + strand, within Psest_0774at 843.690 kb on - strand, within Psest_0774at 843.690 kb on - strand, within Psest_0774at 843.690 kb on - strand, within Psest_0774at 843.867 kb on - strandat 844.019 kb on + strandat 844.020 kb on - strandat 844.046 kb on - strandat 844.046 kb on - strandat 844.130 kb on + strandat 844.130 kb on + strandat 844.131 kb on - strandat 844.131 kb on - strandat 844.232 kb on + strandat 844.233 kb on - strandat 844.233 kb on - strandat 844.233 kb on - strandat 844.233 kb on - strandat 844.233 kb on - strandat 844.602 kb on + strand, within Psest_0775at 844.603 kb on - strand, within Psest_0775at 844.603 kb on - strand, within Psest_0775at 844.603 kb on - strand, within Psest_0775at 844.791 kb on + strand, within Psest_0775at 844.791 kb on + strand, within Psest_0775at 844.791 kb on + strand, within Psest_0775at 844.791 kb on + strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.852 kb on - strand, within Psest_0775at 844.852 kb on - strand, within Psest_0775at 844.852 kb on - strand, within Psest_0775at 844.884 kb on + strand, within Psest_0775at 844.884 kb on + strand, within Psest_0775at 844.885 kb on - strand, within Psest_0775at 844.885 kb on - strand, within Psest_0775at 844.885 kb on - strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.965 kb on + strand, within Psest_0775at 844.966 kb on - strand, within Psest_0775at 844.966 kb on - strand, within Psest_0775at 844.966 kb on - strand, within Psest_0775at 845.259 kb on + strand, within Psest_0775at 845.259 kb on + strand, within Psest_0775at 845.260 kb on - strand, within Psest_0775at 845.277 kb on + strand, within Psest_0775at 845.277 kb on + strand, within Psest_0775at 845.278 kb on - strand, within Psest_0775at 845.391 kb on + strand, within Psest_0775at 845.391 kb on + strand, within Psest_0775at 845.391 kb on + strand, within Psest_0775at 845.391 kb on + strand, within Psest_0775at 845.392 kb on - strand, within Psest_0775at 845.392 kb on - strand, within Psest_0775at 845.392 kb on - strand, within Psest_0775at 845.625 kb on + strandat 845.625 kb on + strandat 845.625 kb on + strandat 845.625 kb on + strandat 845.626 kb on - strandat 845.643 kb on + strandat 845.644 kb on - strandat 845.718 kb on + strandat 845.718 kb on + strandat 845.769 kb on + strandat 845.784 kb on + strandat 845.784 kb on + strandat 845.784 kb on + strandat 845.784 kb on + strandat 845.784 kb on + strandat 845.785 kb on - strandat 845.906 kb on - strand, within Psest_0776at 845.998 kb on + strand, within Psest_0776at 845.999 kb on - strand, within Psest_0776at 846.022 kb on + strand, within Psest_0776at 846.023 kb on - strand, within Psest_0776at 846.023 kb on - strand, within Psest_0776at 846.023 kb on - strand, within Psest_0776at 846.211 kb on + strand, within Psest_0776at 846.211 kb on + strand, within Psest_0776at 846.212 kb on + strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.348 kb on + strandat 846.348 kb on + strandat 846.349 kb on - strandat 846.519 kb on + strand, within Psest_0777at 846.528 kb on + strand, within Psest_0777at 846.573 kb on + strand, within Psest_0777at 846.574 kb on - strand, within Psest_0777at 846.574 kb on - strand, within Psest_0777

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
remove
843,385 + Psest_0774 0.60 -1.6
843,385 + Psest_0774 0.60 +1.8
843,560 + Psest_0774 0.74 +0.3
843,568 + Psest_0774 0.75 -0.5
843,568 + Psest_0774 0.75 -2.4
843,569 - Psest_0774 0.75 +0.7
843,689 + Psest_0774 0.84 +0.4
843,689 + Psest_0774 0.84 -1.4
843,689 + Psest_0774 0.84 -0.6
843,690 - Psest_0774 0.84 +2.8
843,690 - Psest_0774 0.84 +0.5
843,690 - Psest_0774 0.84 +0.3
843,867 - +2.3
844,019 + +0.8
844,020 - +0.2
844,046 - -2.1
844,046 - +0.2
844,130 + +0.3
844,130 + +2.7
844,131 - -0.1
844,131 - +2.1
844,232 + +0.4
844,233 - +0.2
844,233 - +0.4
844,233 - +1.3
844,233 - -1.6
844,233 - +1.0
844,602 + Psest_0775 0.27 -0.8
844,603 - Psest_0775 0.27 -2.0
844,603 - Psest_0775 0.27 +0.3
844,603 - Psest_0775 0.27 -2.1
844,791 + Psest_0775 0.40 +0.0
844,791 + Psest_0775 0.40 +0.5
844,791 + Psest_0775 0.40 -0.4
844,791 + Psest_0775 0.40 -0.8
844,792 - Psest_0775 0.40 +0.1
844,792 - Psest_0775 0.40 -1.3
844,792 - Psest_0775 0.40 -0.5
844,792 - Psest_0775 0.40 -1.6
844,792 - Psest_0775 0.40 -0.8
844,792 - Psest_0775 0.40 -1.0
844,792 - Psest_0775 0.40 +1.3
844,852 - Psest_0775 0.44 -1.4
844,852 - Psest_0775 0.44 -1.6
844,852 - Psest_0775 0.44 -0.1
844,884 + Psest_0775 0.46 -0.3
844,884 + Psest_0775 0.46 -2.4
844,885 - Psest_0775 0.46 +1.4
844,885 - Psest_0775 0.46 -3.1
844,885 - Psest_0775 0.46 +1.4
844,965 + Psest_0775 0.51 -2.1
844,965 + Psest_0775 0.51 +0.2
844,965 + Psest_0775 0.51 +1.4
844,965 + Psest_0775 0.51 -0.8
844,965 + Psest_0775 0.51 -1.4
844,965 + Psest_0775 0.51 +1.2
844,965 + Psest_0775 0.51 -1.6
844,965 + Psest_0775 0.51 -1.6
844,965 + Psest_0775 0.51 +1.8
844,965 + Psest_0775 0.51 +0.5
844,965 + Psest_0775 0.51 +0.5
844,965 + Psest_0775 0.51 -1.0
844,965 + Psest_0775 0.51 -1.1
844,966 - Psest_0775 0.51 +1.9
844,966 - Psest_0775 0.51 -2.0
844,966 - Psest_0775 0.51 +2.6
845,259 + Psest_0775 0.70 -0.8
845,259 + Psest_0775 0.70 +1.2
845,260 - Psest_0775 0.70 -0.8
845,277 + Psest_0775 0.71 +0.5
845,277 + Psest_0775 0.71 -0.6
845,278 - Psest_0775 0.71 +3.1
845,391 + Psest_0775 0.79 -0.4
845,391 + Psest_0775 0.79 +0.8
845,391 + Psest_0775 0.79 +0.5
845,391 + Psest_0775 0.79 -2.0
845,392 - Psest_0775 0.79 -0.5
845,392 - Psest_0775 0.79 +2.5
845,392 - Psest_0775 0.79 +0.5
845,625 + +0.4
845,625 + -0.1
845,625 + -0.5
845,625 + -1.8
845,626 - +0.1
845,643 + -0.0
845,644 - +0.1
845,718 + +3.5
845,718 + +1.2
845,769 + -2.1
845,784 + +0.5
845,784 + +0.5
845,784 + +1.2
845,784 + -0.5
845,784 + -0.6
845,785 - +1.6
845,906 - Psest_0776 0.22 +3.6
845,998 + Psest_0776 0.38 +0.0
845,999 - Psest_0776 0.39 +0.2
846,022 + Psest_0776 0.43 -0.1
846,023 - Psest_0776 0.43 +0.1
846,023 - Psest_0776 0.43 +0.1
846,023 - Psest_0776 0.43 -1.1
846,211 + Psest_0776 0.77 -0.8
846,211 + Psest_0776 0.77 +0.3
846,212 + Psest_0776 0.77 +0.9
846,212 - Psest_0776 0.77 -0.4
846,212 - Psest_0776 0.77 -1.9
846,212 - Psest_0776 0.77 -1.4
846,212 - Psest_0776 0.77 +0.1
846,212 - Psest_0776 0.77 +1.2
846,348 + +2.2
846,348 + +0.9
846,349 - -2.0
846,519 + Psest_0777 0.39 -2.3
846,528 + Psest_0777 0.41 -0.1
846,573 + Psest_0777 0.51 +0.3
846,574 - Psest_0777 0.51 -1.6
846,574 - Psest_0777 0.51 -0.8

Or see this region's nucleotide sequence