Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0753 and Psest_0754 are separated by 88 nucleotides Psest_0754 and Psest_0755 are separated by 92 nucleotides Psest_0755 and Psest_0756 are separated by 94 nucleotides
Psest_0753: Psest_0753 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 824,690 to 825,814
_0753
Psest_0754: Psest_0754 - Predicted transcriptional regulators, at 825,903 to 826,208
_0754
Psest_0755: Psest_0755 - Bacterial regulatory helix-turn-helix proteins, AraC family., at 826,301 to 827,098
_0755
Psest_0756: Psest_0756 - alkylhydroperoxidase AhpD family core domain, at 827,193 to 827,651
_0756
Position (kb) 825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 825.182 kb on + strand, within Psest_0753 at 825.182 kb on + strand, within Psest_0753 at 825.183 kb on - strand, within Psest_0753 at 825.302 kb on + strand, within Psest_0753 at 825.334 kb on + strand, within Psest_0753 at 825.334 kb on + strand, within Psest_0753 at 825.434 kb on + strand, within Psest_0753 at 825.434 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.512 kb on + strand, within Psest_0753 at 825.516 kb on + strand, within Psest_0753 at 825.516 kb on + strand, within Psest_0753 at 825.516 kb on + strand, within Psest_0753 at 825.517 kb on - strand, within Psest_0753 at 825.517 kb on - strand, within Psest_0753 at 825.608 kb on + strand, within Psest_0753 at 825.608 kb on + strand, within Psest_0753 at 825.608 kb on + strand, within Psest_0753 at 825.609 kb on - strand, within Psest_0753 at 825.609 kb on - strand, within Psest_0753 at 825.620 kb on + strand, within Psest_0753 at 825.620 kb on + strand, within Psest_0753 at 825.620 kb on + strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.736 kb on + strand at 825.765 kb on - strand at 825.785 kb on + strand at 825.786 kb on - strand at 825.786 kb on - strand at 825.870 kb on + strand at 825.902 kb on + strand at 825.902 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.911 kb on - strand at 825.911 kb on - strand at 825.911 kb on - strand at 825.911 kb on - strand at 826.086 kb on + strand, within Psest_0754 at 826.086 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.493 kb on + strand, within Psest_0755 at 826.493 kb on + strand, within Psest_0755 at 826.493 kb on + strand, within Psest_0755 at 826.493 kb on + strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.598 kb on + strand, within Psest_0755 at 826.598 kb on + strand, within Psest_0755 at 826.598 kb on + strand, within Psest_0755 at 826.599 kb on - strand, within Psest_0755 at 826.599 kb on - strand, within Psest_0755 at 826.744 kb on + strand, within Psest_0755 at 826.745 kb on - strand, within Psest_0755 at 826.745 kb on - strand, within Psest_0755 at 826.745 kb on - strand, within Psest_0755 at 826.977 kb on + strand, within Psest_0755 at 826.977 kb on + strand, within Psest_0755 at 826.977 kb on + strand, within Psest_0755 at 826.977 kb on + strand, within Psest_0755 at 826.978 kb on - strand, within Psest_0755 at 827.022 kb on + strand at 827.022 kb on + strand at 827.022 kb on + strand at 827.022 kb on + strand at 827.023 kb on - strand at 827.130 kb on - strand at 827.134 kb on + strand at 827.134 kb on + strand at 827.134 kb on + strand at 827.135 kb on - strand at 827.135 kb on - strand at 827.135 kb on - strand at 827.135 kb on - strand at 827.135 kb on - strand at 827.205 kb on + strand at 827.205 kb on + strand at 827.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 825,182 + Psest_0753 0.44 +0.6 825,182 + Psest_0753 0.44 +1.1 825,183 - Psest_0753 0.44 -0.8 825,302 + Psest_0753 0.54 -0.6 825,334 + Psest_0753 0.57 -0.5 825,334 + Psest_0753 0.57 -1.6 825,434 + Psest_0753 0.66 +0.3 825,434 + Psest_0753 0.66 +0.5 825,470 + Psest_0753 0.69 -2.6 825,470 + Psest_0753 0.69 -2.2 825,470 + Psest_0753 0.69 -1.7 825,470 + Psest_0753 0.69 -1.4 825,470 + Psest_0753 0.69 -1.7 825,471 - Psest_0753 0.69 +3.4 825,471 - Psest_0753 0.69 +1.7 825,471 - Psest_0753 0.69 +0.7 825,471 - Psest_0753 0.69 -0.5 825,512 + Psest_0753 0.73 -0.2 825,516 + Psest_0753 0.73 +1.2 825,516 + Psest_0753 0.73 -1.8 825,516 + Psest_0753 0.73 -0.8 825,517 - Psest_0753 0.74 +1.0 825,517 - Psest_0753 0.74 +1.2 825,608 + Psest_0753 0.82 -3.0 825,608 + Psest_0753 0.82 -0.5 825,608 + Psest_0753 0.82 -0.8 825,609 - Psest_0753 0.82 +0.9 825,609 - Psest_0753 0.82 -0.4 825,620 + Psest_0753 0.83 -0.3 825,620 + Psest_0753 0.83 -2.5 825,620 + Psest_0753 0.83 +3.6 825,621 - Psest_0753 0.83 -0.7 825,621 - Psest_0753 0.83 +1.6 825,621 - Psest_0753 0.83 -0.7 825,621 - Psest_0753 0.83 +1.7 825,621 - Psest_0753 0.83 -2.2 825,736 + -2.7 825,765 - -0.8 825,785 + +1.0 825,786 - +0.7 825,786 - -0.9 825,870 + -0.2 825,902 + +2.1 825,902 + +0.2 825,910 + -1.2 825,910 + +1.6 825,910 + +0.1 825,910 + -2.2 825,910 + +0.3 825,910 + +0.2 825,910 + -0.4 825,910 + -1.6 825,910 + +0.4 825,910 + -0.2 825,911 - +1.8 825,911 - -0.5 825,911 - +2.5 825,911 - -1.4 826,086 + Psest_0754 0.60 +0.3 826,086 + Psest_0754 0.60 +0.5 826,146 + Psest_0754 0.79 +1.8 826,146 + Psest_0754 0.79 -1.5 826,146 + Psest_0754 0.79 -1.8 826,146 + Psest_0754 0.79 -1.2 826,147 - Psest_0754 0.80 +1.7 826,147 - Psest_0754 0.80 +0.6 826,147 - Psest_0754 0.80 -0.2 826,147 - Psest_0754 0.80 +0.2 826,147 - Psest_0754 0.80 -0.5 826,149 + Psest_0754 0.80 -2.4 826,149 + Psest_0754 0.80 -2.0 826,149 + Psest_0754 0.80 -0.2 826,149 + Psest_0754 0.80 -0.3 826,149 + Psest_0754 0.80 +0.7 826,149 + Psest_0754 0.80 +2.2 826,149 + Psest_0754 0.80 -1.9 826,150 - Psest_0754 0.81 -0.8 826,150 - Psest_0754 0.81 -2.4 826,150 - Psest_0754 0.81 -1.4 826,150 - Psest_0754 0.81 +1.0 826,150 - Psest_0754 0.81 -2.3 826,150 - Psest_0754 0.81 -2.5 826,150 - Psest_0754 0.81 -1.0 826,150 - Psest_0754 0.81 -1.2 826,493 + Psest_0755 0.24 +0.2 826,493 + Psest_0755 0.24 +0.6 826,493 + Psest_0755 0.24 +0.8 826,493 + Psest_0755 0.24 +2.3 826,494 - Psest_0755 0.24 +0.6 826,494 - Psest_0755 0.24 +0.9 826,494 - Psest_0755 0.24 -0.2 826,494 - Psest_0755 0.24 -3.4 826,494 - Psest_0755 0.24 +0.8 826,494 - Psest_0755 0.24 +0.8 826,494 - Psest_0755 0.24 +0.4 826,494 - Psest_0755 0.24 -0.4 826,494 - Psest_0755 0.24 +0.7 826,598 + Psest_0755 0.37 -2.3 826,598 + Psest_0755 0.37 -1.6 826,598 + Psest_0755 0.37 -1.4 826,599 - Psest_0755 0.37 +1.7 826,599 - Psest_0755 0.37 +0.1 826,744 + Psest_0755 0.56 -0.2 826,745 - Psest_0755 0.56 +1.2 826,745 - Psest_0755 0.56 -0.4 826,745 - Psest_0755 0.56 -0.4 826,977 + Psest_0755 0.85 -0.2 826,977 + Psest_0755 0.85 +1.8 826,977 + Psest_0755 0.85 -1.8 826,977 + Psest_0755 0.85 +1.6 826,978 - Psest_0755 0.85 -1.6 827,022 + -0.3 827,022 + -0.8 827,022 + -3.6 827,022 + -0.5 827,023 - +3.2 827,130 - -1.2 827,134 + -2.5 827,134 + -1.6 827,134 + +1.9 827,135 - -1.5 827,135 - -0.4 827,135 - +0.6 827,135 - +1.4 827,135 - +2.4 827,205 + -1.5 827,205 + -2.2 827,206 - -1.8
Or see this region's nucleotide sequence