Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0739 and Psest_0740 are separated by 4 nucleotides Psest_0740 and Psest_0741 are separated by 86 nucleotides Psest_0741 and Psest_0742 are separated by 3 nucleotides Psest_0742 and Psest_0743 are separated by 100 nucleotides
Psest_0739: Psest_0739 - Copper chaperone, at 813,239 to 813,430
_0739
Psest_0740: Psest_0740 - Transcriptional regulator, at 813,435 to 814,199
_0740
Psest_0741: Psest_0741 - drug resistance transporter, Bcr/CflA subfamily, at 814,286 to 815,458
_0741
Psest_0742: Psest_0742 - hypothetical protein, at 815,462 to 815,626
_0742
Psest_0743: Psest_0743 - adenosine deaminase, at 815,727 to 816,776
_0743
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 813.940 kb on + strand, within Psest_0740 at 813.940 kb on + strand, within Psest_0740 at 813.941 kb on - strand, within Psest_0740 at 813.941 kb on - strand, within Psest_0740 at 814.145 kb on - strand at 814.173 kb on + strand at 814.174 kb on - strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.308 kb on + strand at 814.309 kb on - strand at 814.309 kb on - strand at 814.309 kb on - strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.427 kb on + strand, within Psest_0741 at 814.427 kb on + strand, within Psest_0741 at 814.428 kb on - strand, within Psest_0741 at 814.428 kb on - strand, within Psest_0741 at 814.460 kb on + strand, within Psest_0741 at 814.832 kb on + strand, within Psest_0741 at 814.833 kb on - strand, within Psest_0741 at 814.880 kb on + strand, within Psest_0741 at 814.881 kb on - strand, within Psest_0741 at 814.948 kb on + strand, within Psest_0741 at 814.958 kb on + strand, within Psest_0741 at 814.958 kb on + strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.994 kb on + strand, within Psest_0741 at 814.994 kb on + strand, within Psest_0741 at 815.573 kb on - strand, within Psest_0742 at 815.595 kb on + strand, within Psest_0742 at 815.640 kb on + strand at 815.642 kb on + strand at 815.830 kb on + strand at 815.842 kb on + strand, within Psest_0743 at 815.843 kb on - strand, within Psest_0743 at 816.071 kb on - strand, within Psest_0743 at 816.071 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 813,940 + Psest_0740 0.66 +2.8 813,940 + Psest_0740 0.66 +1.8 813,941 - Psest_0740 0.66 +4.1 813,941 - Psest_0740 0.66 +4.3 814,145 - +1.2 814,173 + +0.6 814,174 - -0.2 814,187 + +1.2 814,187 + -1.2 814,187 + -1.6 814,187 + +1.2 814,187 + +1.1 814,187 + +1.4 814,187 + +1.7 814,187 + +1.4 814,187 + +1.9 814,187 + +1.7 814,187 + +1.3 814,187 + +1.2 814,187 + +2.4 814,187 + +1.5 814,188 - -3.1 814,188 - -3.4 814,188 - +0.2 814,188 - +0.6 814,188 - +0.2 814,192 - +0.2 814,192 - -1.8 814,192 - -3.3 814,192 - -0.4 814,308 + -2.6 814,309 - +2.7 814,309 - +1.2 814,309 - +1.3 814,352 + -1.2 814,352 + +0.7 814,352 + -0.4 814,352 + -0.6 814,352 + -1.1 814,352 + +1.0 814,352 + +0.8 814,352 + +0.5 814,352 + +1.2 814,352 + +0.2 814,352 + +0.0 814,352 + +0.3 814,352 + -1.2 814,352 + -0.2 814,352 + +1.9 814,352 + -3.3 814,353 - +1.2 814,353 - -1.2 814,353 - +1.9 814,353 - -0.5 814,353 - -0.1 814,353 - +1.7 814,353 - +1.5 814,353 - +2.2 814,353 - -0.8 814,353 - -1.6 814,353 - -2.0 814,353 - -1.2 814,353 - -1.4 814,353 - -1.4 814,353 - -0.5 814,353 - -0.9 814,353 - -1.4 814,353 - +0.5 814,353 - +1.2 814,353 - -1.6 814,353 - -1.3 814,427 + Psest_0741 0.12 -0.7 814,427 + Psest_0741 0.12 -0.6 814,428 - Psest_0741 0.12 +0.4 814,428 - Psest_0741 0.12 -0.0 814,460 + Psest_0741 0.15 +1.0 814,832 + Psest_0741 0.47 -1.6 814,833 - Psest_0741 0.47 -0.4 814,880 + Psest_0741 0.51 +2.7 814,881 - Psest_0741 0.51 +0.6 814,948 + Psest_0741 0.56 +1.6 814,958 + Psest_0741 0.57 +1.2 814,958 + Psest_0741 0.57 -1.4 814,959 - Psest_0741 0.57 -1.6 814,959 - Psest_0741 0.57 -0.8 814,959 - Psest_0741 0.57 -1.6 814,994 + Psest_0741 0.60 -1.6 814,994 + Psest_0741 0.60 -0.6 815,573 - Psest_0742 0.67 +0.2 815,595 + Psest_0742 0.81 -1.0 815,640 + +0.3 815,642 + -1.8 815,830 + +0.4 815,842 + Psest_0743 0.11 -1.8 815,843 - Psest_0743 0.11 -0.1 816,071 - Psest_0743 0.33 -0.1 816,071 - Psest_0743 0.33 -1.6 816,455 - Psest_0743 0.69 +0.4 816,455 - Psest_0743 0.69 +0.9 816,455 - Psest_0743 0.69 -0.8
Or see this region's nucleotide sequence