Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0706 and Psest_0707 overlap by 11 nucleotides Psest_0707 and Psest_0708 are separated by 112 nucleotides Psest_0708 and Psest_0709 are separated by 52 nucleotides
Psest_0706: Psest_0706 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 775,355 to 776,947
_0706
Psest_0707: Psest_0707 - MYND finger., at 776,937 to 777,170
_0707
Psest_0708: Psest_0708 - outer membrane assembly lipoprotein YfiO, at 777,283 to 778,272
_0708
Psest_0709: Psest_0709 - pseudouridine synthase, RluA family, at 778,325 to 779,452
_0709
Position (kb) 777
778
779 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 776.490 kb on + strand, within Psest_0706 at 776.491 kb on - strand, within Psest_0706 at 776.526 kb on + strand, within Psest_0706 at 776.526 kb on + strand, within Psest_0706 at 776.526 kb on + strand, within Psest_0706 at 776.526 kb on + strand, within Psest_0706 at 776.526 kb on + strand, within Psest_0706 at 776.526 kb on + strand, within Psest_0706 at 776.527 kb on - strand, within Psest_0706 at 776.538 kb on + strand, within Psest_0706 at 776.538 kb on + strand, within Psest_0706 at 776.538 kb on + strand, within Psest_0706 at 776.538 kb on + strand, within Psest_0706 at 776.538 kb on + strand, within Psest_0706 at 776.538 kb on + strand, within Psest_0706 at 776.539 kb on - strand, within Psest_0706 at 776.539 kb on - strand, within Psest_0706 at 776.539 kb on - strand, within Psest_0706 at 776.539 kb on - strand, within Psest_0706 at 776.539 kb on - strand, within Psest_0706 at 776.664 kb on + strand, within Psest_0706 at 776.664 kb on + strand, within Psest_0706 at 776.664 kb on + strand, within Psest_0706 at 776.664 kb on + strand, within Psest_0706 at 776.664 kb on + strand, within Psest_0706 at 776.772 kb on + strand, within Psest_0706 at 776.772 kb on + strand, within Psest_0706 at 776.889 kb on + strand at 776.890 kb on - strand at 776.986 kb on + strand, within Psest_0707 at 777.024 kb on + strand, within Psest_0707 at 777.024 kb on + strand, within Psest_0707 at 777.024 kb on + strand, within Psest_0707 at 777.025 kb on - strand, within Psest_0707 at 777.025 kb on - strand, within Psest_0707 at 777.025 kb on - strand, within Psest_0707 at 777.025 kb on - strand, within Psest_0707 at 777.025 kb on - strand, within Psest_0707 at 777.025 kb on - strand, within Psest_0707 at 777.025 kb on - strand, within Psest_0707 at 777.025 kb on - strand, within Psest_0707 at 777.025 kb on - strand, within Psest_0707 at 777.025 kb on - strand, within Psest_0707 at 777.030 kb on + strand, within Psest_0707 at 777.252 kb on + strand at 777.252 kb on + strand at 777.252 kb on + strand at 777.252 kb on + strand at 777.252 kb on + strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.253 kb on - strand at 777.343 kb on + strand at 777.409 kb on + strand, within Psest_0708 at 777.555 kb on - strand, within Psest_0708 at 777.555 kb on - strand, within Psest_0708 at 778.467 kb on + strand, within Psest_0709 at 778.467 kb on + strand, within Psest_0709 at 778.467 kb on + strand, within Psest_0709 at 778.467 kb on + strand, within Psest_0709 at 778.468 kb on - strand, within Psest_0709 at 778.468 kb on - strand, within Psest_0709 at 778.468 kb on - strand, within Psest_0709 at 778.477 kb on + strand, within Psest_0709 at 778.477 kb on + strand, within Psest_0709 at 778.478 kb on - strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.629 kb on + strand, within Psest_0709 at 778.630 kb on - strand, within Psest_0709 at 778.630 kb on - strand, within Psest_0709 at 778.630 kb on - strand, within Psest_0709 at 778.730 kb on - strand, within Psest_0709 at 778.748 kb on + strand, within Psest_0709 at 778.748 kb on + strand, within Psest_0709 at 778.748 kb on + strand, within Psest_0709 at 778.749 kb on - strand, within Psest_0709 at 778.825 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.997 kb on + strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 778.998 kb on - strand, within Psest_0709 at 779.080 kb on + strand, within Psest_0709 at 779.080 kb on + strand, within Psest_0709 at 779.080 kb on + strand, within Psest_0709 at 779.182 kb on + strand, within Psest_0709 at 779.183 kb on - strand, within Psest_0709 at 779.244 kb on - strand, within Psest_0709 at 779.244 kb on - strand, within Psest_0709
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 776,490 + Psest_0706 0.71 +1.2 776,491 - Psest_0706 0.71 +1.0 776,526 + Psest_0706 0.74 +2.2 776,526 + Psest_0706 0.74 +0.3 776,526 + Psest_0706 0.74 +0.5 776,526 + Psest_0706 0.74 -2.9 776,526 + Psest_0706 0.74 -1.2 776,526 + Psest_0706 0.74 +1.2 776,527 - Psest_0706 0.74 +0.9 776,538 + Psest_0706 0.74 +0.9 776,538 + Psest_0706 0.74 +0.9 776,538 + Psest_0706 0.74 +1.9 776,538 + Psest_0706 0.74 -2.6 776,538 + Psest_0706 0.74 +1.0 776,538 + Psest_0706 0.74 -3.0 776,539 - Psest_0706 0.74 -3.1 776,539 - Psest_0706 0.74 +3.4 776,539 - Psest_0706 0.74 +2.5 776,539 - Psest_0706 0.74 +1.8 776,539 - Psest_0706 0.74 +0.5 776,664 + Psest_0706 0.82 -3.4 776,664 + Psest_0706 0.82 +0.2 776,664 + Psest_0706 0.82 +1.6 776,664 + Psest_0706 0.82 -1.4 776,664 + Psest_0706 0.82 +2.1 776,772 + Psest_0706 0.89 -3.8 776,772 + Psest_0706 0.89 +0.8 776,889 + +2.5 776,890 - +1.0 776,986 + Psest_0707 0.21 +1.3 777,024 + Psest_0707 0.37 -0.8 777,024 + Psest_0707 0.37 +0.3 777,024 + Psest_0707 0.37 +0.4 777,025 - Psest_0707 0.38 +0.7 777,025 - Psest_0707 0.38 +0.3 777,025 - Psest_0707 0.38 -0.2 777,025 - Psest_0707 0.38 -2.4 777,025 - Psest_0707 0.38 +0.9 777,025 - Psest_0707 0.38 +0.9 777,025 - Psest_0707 0.38 +0.6 777,025 - Psest_0707 0.38 -1.1 777,025 - Psest_0707 0.38 +2.0 777,025 - Psest_0707 0.38 +2.3 777,030 + Psest_0707 0.40 +1.0 777,252 + +0.5 777,252 + -0.9 777,252 + +1.8 777,252 + -2.0 777,252 + +0.9 777,253 - -3.4 777,253 - +0.2 777,253 - +1.6 777,253 - -2.7 777,253 - -3.8 777,253 - -3.5 777,253 - -0.8 777,253 - -0.6 777,253 - -4.0 777,253 - +1.4 777,253 - +0.8 777,253 - +1.4 777,343 + +3.2 777,409 + Psest_0708 0.13 -0.1 777,555 - Psest_0708 0.27 -3.3 777,555 - Psest_0708 0.27 -1.8 778,467 + Psest_0709 0.13 +2.4 778,467 + Psest_0709 0.13 +2.0 778,467 + Psest_0709 0.13 -1.1 778,467 + Psest_0709 0.13 +0.0 778,468 - Psest_0709 0.13 -2.7 778,468 - Psest_0709 0.13 -4.3 778,468 - Psest_0709 0.13 -1.4 778,477 + Psest_0709 0.13 -2.8 778,477 + Psest_0709 0.13 +0.2 778,478 - Psest_0709 0.14 +1.6 778,629 + Psest_0709 0.27 -1.5 778,629 + Psest_0709 0.27 +1.9 778,629 + Psest_0709 0.27 -0.2 778,629 + Psest_0709 0.27 -2.2 778,630 - Psest_0709 0.27 -0.0 778,630 - Psest_0709 0.27 -4.1 778,630 - Psest_0709 0.27 -2.3 778,730 - Psest_0709 0.36 +0.9 778,748 + Psest_0709 0.38 -1.1 778,748 + Psest_0709 0.38 -2.9 778,748 + Psest_0709 0.38 -3.6 778,749 - Psest_0709 0.38 +0.3 778,825 + Psest_0709 0.44 -0.6 778,997 + Psest_0709 0.60 -0.3 778,997 + Psest_0709 0.60 -3.7 778,997 + Psest_0709 0.60 +0.1 778,997 + Psest_0709 0.60 -2.9 778,998 - Psest_0709 0.60 -1.5 778,998 - Psest_0709 0.60 -3.4 778,998 - Psest_0709 0.60 -1.2 778,998 - Psest_0709 0.60 -3.7 778,998 - Psest_0709 0.60 +1.2 778,998 - Psest_0709 0.60 -1.1 779,080 + Psest_0709 0.67 -2.3 779,080 + Psest_0709 0.67 -4.3 779,080 + Psest_0709 0.67 -1.7 779,182 + Psest_0709 0.76 -3.4 779,183 - Psest_0709 0.76 +1.1 779,244 - Psest_0709 0.81 +0.6 779,244 - Psest_0709 0.81 -0.0
Or see this region's nucleotide sequence