Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0067 and Psest_0068 are separated by 101 nucleotides Psest_0068 and Psest_0069 are separated by 79 nucleotides
Psest_0067: Psest_0067 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 67,502 to 68,500
_0067
Psest_0068: Psest_0068 - Amidases related to nicotinamidase, at 68,602 to 69,156
_0068
Psest_0069: Psest_0069 - UDP-glucose-4-epimerase, at 69,236 to 70,300
_0069
Position (kb)
68
69
70 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 67.699 kb on - strand, within Psest_0067 at 67.835 kb on + strand, within Psest_0067 at 67.917 kb on + strand, within Psest_0067 at 68.519 kb on - strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.559 kb on + strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.645 kb on - strand at 68.645 kb on - strand at 69.136 kb on + strand at 69.136 kb on + strand at 69.210 kb on + strand at 69.210 kb on + strand at 69.210 kb on + strand at 69.606 kb on + strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.607 kb on - strand, within Psest_0069 at 69.651 kb on + strand, within Psest_0069 at 69.651 kb on + strand, within Psest_0069 at 69.652 kb on - strand, within Psest_0069 at 69.670 kb on + strand, within Psest_0069 at 69.670 kb on + strand, within Psest_0069 at 69.670 kb on + strand, within Psest_0069 at 69.671 kb on - strand, within Psest_0069 at 69.696 kb on + strand, within Psest_0069 at 69.696 kb on + strand, within Psest_0069 at 69.697 kb on - strand, within Psest_0069 at 69.697 kb on - strand, within Psest_0069 at 69.775 kb on - strand, within Psest_0069 at 69.775 kb on - strand, within Psest_0069
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 67,699 - Psest_0067 0.20 +1.7 67,835 + Psest_0067 0.33 -1.2 67,917 + Psest_0067 0.42 -2.2 68,519 - +1.0 68,559 + +0.7 68,559 + +1.7 68,559 + -2.2 68,559 + +0.7 68,559 + -1.9 68,559 + +1.3 68,559 + -3.3 68,559 + -1.3 68,559 + -1.9 68,559 + +0.7 68,559 + -0.5 68,559 + +0.9 68,559 + -2.2 68,559 + +1.9 68,559 + -2.0 68,560 - -1.5 68,560 - +2.1 68,560 - +3.5 68,560 - -0.1 68,560 - +0.4 68,560 - -0.3 68,560 - -0.2 68,560 - +0.7 68,560 - +2.0 68,560 - +1.3 68,560 - +0.8 68,560 - +1.0 68,560 - +1.0 68,560 - +1.9 68,560 - +1.0 68,560 - -1.3 68,645 - +0.3 68,645 - -1.5 69,136 + -0.3 69,136 + -0.7 69,210 + -0.9 69,210 + +2.7 69,210 + -1.3 69,606 + Psest_0069 0.35 -1.2 69,607 - Psest_0069 0.35 -0.7 69,607 - Psest_0069 0.35 +0.9 69,607 - Psest_0069 0.35 -0.7 69,607 - Psest_0069 0.35 -0.5 69,607 - Psest_0069 0.35 -0.9 69,607 - Psest_0069 0.35 +0.4 69,651 + Psest_0069 0.39 +0.4 69,651 + Psest_0069 0.39 +1.0 69,652 - Psest_0069 0.39 -0.9 69,670 + Psest_0069 0.41 +1.1 69,670 + Psest_0069 0.41 +0.2 69,670 + Psest_0069 0.41 -2.7 69,671 - Psest_0069 0.41 +0.3 69,696 + Psest_0069 0.43 +0.1 69,696 + Psest_0069 0.43 -3.0 69,697 - Psest_0069 0.43 +0.7 69,697 - Psest_0069 0.43 -0.1 69,775 - Psest_0069 0.51 -1.0 69,775 - Psest_0069 0.51 +0.1
Or see this region's nucleotide sequence