Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0662

Experiment: Polymyxin B sulfate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0661 and Psest_0662 are separated by 16 nucleotidesPsest_0662 and Psest_0663 are separated by 72 nucleotides Psest_0661: Psest_0661 - PAS domain S-box, at 718,437 to 720,476 _0661 Psest_0662: Psest_0662 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 720,493 to 721,146 _0662 Psest_0663: Psest_0663 - PAS fold., at 721,219 to 723,018 _0663 Position (kb) 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2at 719.686 kb on + strand, within Psest_0661at 719.686 kb on + strand, within Psest_0661at 719.686 kb on + strand, within Psest_0661at 719.687 kb on - strand, within Psest_0661at 719.687 kb on - strand, within Psest_0661at 719.687 kb on - strand, within Psest_0661at 720.712 kb on + strand, within Psest_0662at 720.760 kb on + strand, within Psest_0662at 720.760 kb on + strand, within Psest_0662at 720.761 kb on - strand, within Psest_0662at 721.091 kb on + strandat 721.255 kb on + strandat 721.256 kb on - strandat 721.343 kb on + strandat 721.619 kb on + strand, within Psest_0663at 721.619 kb on + strand, within Psest_0663at 721.620 kb on - strand, within Psest_0663at 721.620 kb on - strand, within Psest_0663at 721.620 kb on - strand, within Psest_0663at 721.620 kb on - strand, within Psest_0663at 721.845 kb on + strand, within Psest_0663

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
remove
719,686 + Psest_0661 0.61 -0.6
719,686 + Psest_0661 0.61 -0.8
719,686 + Psest_0661 0.61 -0.8
719,687 - Psest_0661 0.61 -0.4
719,687 - Psest_0661 0.61 +0.2
719,687 - Psest_0661 0.61 -0.4
720,712 + Psest_0662 0.33 -0.8
720,760 + Psest_0662 0.41 -2.3
720,760 + Psest_0662 0.41 -1.5
720,761 - Psest_0662 0.41 -0.4
721,091 + -0.9
721,255 + -0.4
721,256 - -2.1
721,343 + -1.1
721,619 + Psest_0663 0.22 +0.2
721,619 + Psest_0663 0.22 +2.2
721,620 - Psest_0663 0.22 +0.8
721,620 - Psest_0663 0.22 -0.1
721,620 - Psest_0663 0.22 -0.5
721,620 - Psest_0663 0.22 +0.5
721,845 + Psest_0663 0.35 +0.5

Or see this region's nucleotide sequence