Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0619 and Psest_0620 are separated by 214 nucleotides Psest_0620 and Psest_0621 are separated by 4 nucleotides Psest_0621 and Psest_0622 overlap by 4 nucleotides
Psest_0619: Psest_0619 - cation diffusion facilitator family transporter, at 671,288 to 672,208
_0619
Psest_0620: Psest_0620 - Putative protein-S-isoprenylcysteine methyltransferase, at 672,423 to 672,884
_0620
Psest_0621: Psest_0621 - Protein-disulfide isomerase, at 672,889 to 673,569
_0621
Psest_0622: Psest_0622 - Disulfide bond formation protein DsbB, at 673,566 to 674,000
_0622
Position (kb) 672
673 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 671.431 kb on - strand, within Psest_0619 at 671.435 kb on - strand, within Psest_0619 at 671.435 kb on - strand, within Psest_0619 at 671.480 kb on - strand, within Psest_0619 at 671.585 kb on + strand, within Psest_0619 at 671.594 kb on + strand, within Psest_0619 at 671.594 kb on + strand, within Psest_0619 at 671.602 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.677 kb on - strand, within Psest_0619 at 671.677 kb on - strand, within Psest_0619 at 671.677 kb on - strand, within Psest_0619 at 671.714 kb on - strand, within Psest_0619 at 671.720 kb on - strand, within Psest_0619 at 671.728 kb on + strand, within Psest_0619 at 671.728 kb on + strand, within Psest_0619 at 671.786 kb on - strand, within Psest_0619 at 671.831 kb on - strand, within Psest_0619 at 671.831 kb on - strand, within Psest_0619 at 671.886 kb on + strand, within Psest_0619 at 671.945 kb on - strand, within Psest_0619 at 671.947 kb on - strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.995 kb on - strand, within Psest_0619 at 671.995 kb on - strand, within Psest_0619 at 671.995 kb on - strand, within Psest_0619 at 672.094 kb on - strand, within Psest_0619 at 672.094 kb on - strand, within Psest_0619 at 672.103 kb on - strand, within Psest_0619 at 672.150 kb on + strand at 672.151 kb on - strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.207 kb on - strand at 672.207 kb on - strand at 672.207 kb on - strand at 672.207 kb on - strand at 672.207 kb on - strand at 672.236 kb on - strand at 672.236 kb on - strand at 672.243 kb on + strand at 672.243 kb on + strand at 672.243 kb on + strand at 672.243 kb on + strand at 672.243 kb on + strand at 672.244 kb on - strand at 672.244 kb on - strand at 672.355 kb on + strand at 672.356 kb on - strand at 672.356 kb on - strand at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.540 kb on + strand, within Psest_0620 at 672.541 kb on - strand, within Psest_0620 at 672.541 kb on - strand, within Psest_0620 at 672.541 kb on - strand, within Psest_0620 at 672.606 kb on + strand, within Psest_0620 at 672.606 kb on + strand, within Psest_0620 at 672.606 kb on + strand, within Psest_0620 at 672.607 kb on - strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.634 kb on + strand, within Psest_0620 at 672.634 kb on + strand, within Psest_0620 at 672.634 kb on + strand, within Psest_0620 at 672.635 kb on - strand, within Psest_0620 at 672.635 kb on - strand, within Psest_0620 at 672.651 kb on + strand, within Psest_0620 at 672.652 kb on - strand, within Psest_0620 at 672.689 kb on + strand, within Psest_0620 at 672.689 kb on + strand, within Psest_0620 at 672.689 kb on + strand, within Psest_0620 at 672.689 kb on + strand, within Psest_0620 at 672.689 kb on + strand, within Psest_0620 at 672.690 kb on - strand, within Psest_0620 at 672.690 kb on - strand, within Psest_0620 at 672.692 kb on + strand, within Psest_0620 at 672.693 kb on - strand, within Psest_0620 at 672.693 kb on - strand, within Psest_0620 at 672.750 kb on + strand, within Psest_0620 at 672.750 kb on + strand, within Psest_0620 at 672.884 kb on + strand at 672.885 kb on - strand at 672.885 kb on - strand at 672.885 kb on - strand at 672.885 kb on - strand at 673.009 kb on - strand, within Psest_0621 at 673.009 kb on - strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.054 kb on - strand, within Psest_0621 at 673.054 kb on - strand, within Psest_0621 at 673.121 kb on - strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.250 kb on + strand, within Psest_0621 at 673.250 kb on + strand, within Psest_0621 at 673.251 kb on - strand, within Psest_0621 at 673.251 kb on - strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.305 kb on - strand, within Psest_0621 at 673.305 kb on - strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.497 kb on - strand, within Psest_0621 at 673.497 kb on - strand, within Psest_0621 at 673.593 kb on + strand at 673.593 kb on + strand at 673.593 kb on + strand at 673.594 kb on - strand at 673.594 kb on - strand at 673.594 kb on - strand at 673.594 kb on - strand at 673.616 kb on + strand, within Psest_0622 at 673.617 kb on - strand, within Psest_0622 at 673.735 kb on + strand, within Psest_0622 at 673.736 kb on - strand, within Psest_0622 at 673.736 kb on - strand, within Psest_0622 at 673.736 kb on - strand, within Psest_0622 at 673.792 kb on + strand, within Psest_0622 at 673.793 kb on - strand, within Psest_0622
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 671,431 - Psest_0619 0.16 +0.4 671,435 - Psest_0619 0.16 +2.0 671,435 - Psest_0619 0.16 -3.2 671,480 - Psest_0619 0.21 +1.1 671,585 + Psest_0619 0.32 -1.4 671,594 + Psest_0619 0.33 -1.1 671,594 + Psest_0619 0.33 -2.0 671,602 + Psest_0619 0.34 +1.1 671,604 + Psest_0619 0.34 -0.4 671,604 + Psest_0619 0.34 +1.5 671,604 + Psest_0619 0.34 +0.3 671,604 + Psest_0619 0.34 -0.9 671,677 - Psest_0619 0.42 +1.8 671,677 - Psest_0619 0.42 +2.3 671,677 - Psest_0619 0.42 -1.1 671,714 - Psest_0619 0.46 +0.4 671,720 - Psest_0619 0.47 -1.1 671,728 + Psest_0619 0.48 +0.9 671,728 + Psest_0619 0.48 -3.1 671,786 - Psest_0619 0.54 +0.8 671,831 - Psest_0619 0.59 -0.7 671,831 - Psest_0619 0.59 +1.4 671,886 + Psest_0619 0.65 -2.0 671,945 - Psest_0619 0.71 +2.6 671,947 - Psest_0619 0.72 -3.6 671,994 + Psest_0619 0.77 +2.2 671,994 + Psest_0619 0.77 -1.4 671,994 + Psest_0619 0.77 -1.3 671,994 + Psest_0619 0.77 +1.2 671,994 + Psest_0619 0.77 -0.8 671,994 + Psest_0619 0.77 -3.1 671,994 + Psest_0619 0.77 -0.2 671,994 + Psest_0619 0.77 +0.3 671,995 - Psest_0619 0.77 -0.6 671,995 - Psest_0619 0.77 -0.2 671,995 - Psest_0619 0.77 +1.8 672,094 - Psest_0619 0.88 -2.8 672,094 - Psest_0619 0.88 +0.4 672,103 - Psest_0619 0.88 -2.5 672,150 + -0.8 672,151 - -2.3 672,206 + -2.5 672,206 + +2.7 672,206 + -0.6 672,206 + -1.4 672,206 + +2.3 672,206 + -1.8 672,206 + -0.1 672,207 - +0.6 672,207 - -1.8 672,207 - -2.4 672,207 - -3.9 672,207 - -1.0 672,236 - +4.3 672,236 - -0.7 672,243 + -3.4 672,243 + +0.7 672,243 + -0.8 672,243 + +0.9 672,243 + +2.5 672,244 - +2.1 672,244 - +2.9 672,355 + -2.4 672,356 - +0.2 672,356 - -1.7 672,523 + Psest_0620 0.22 -0.4 672,523 + Psest_0620 0.22 -0.1 672,523 + Psest_0620 0.22 +3.3 672,523 + Psest_0620 0.22 +0.8 672,523 + Psest_0620 0.22 +0.6 672,523 + Psest_0620 0.22 -3.1 672,523 + Psest_0620 0.22 -2.8 672,523 + Psest_0620 0.22 +1.1 672,523 + Psest_0620 0.22 -3.1 672,523 + Psest_0620 0.22 +2.1 672,523 + Psest_0620 0.22 -2.7 672,523 + Psest_0620 0.22 +1.3 672,523 + Psest_0620 0.22 +1.8 672,524 - Psest_0620 0.22 -1.4 672,524 - Psest_0620 0.22 -2.6 672,524 - Psest_0620 0.22 -0.6 672,524 - Psest_0620 0.22 +0.7 672,524 - Psest_0620 0.22 -3.1 672,524 - Psest_0620 0.22 -4.2 672,524 - Psest_0620 0.22 +0.9 672,524 - Psest_0620 0.22 +1.2 672,540 + Psest_0620 0.25 -2.6 672,541 - Psest_0620 0.26 +1.9 672,541 - Psest_0620 0.26 -1.8 672,541 - Psest_0620 0.26 -1.2 672,606 + Psest_0620 0.40 +1.0 672,606 + Psest_0620 0.40 +0.7 672,606 + Psest_0620 0.40 +2.0 672,607 - Psest_0620 0.40 +1.9 672,610 + Psest_0620 0.40 +3.7 672,610 + Psest_0620 0.40 +0.1 672,610 + Psest_0620 0.40 +0.3 672,610 + Psest_0620 0.40 +0.9 672,610 + Psest_0620 0.40 -0.9 672,610 + Psest_0620 0.40 +2.8 672,610 + Psest_0620 0.40 +1.8 672,611 - Psest_0620 0.41 +0.6 672,611 - Psest_0620 0.41 -1.3 672,611 - Psest_0620 0.41 +0.5 672,611 - Psest_0620 0.41 +0.2 672,611 - Psest_0620 0.41 -0.6 672,611 - Psest_0620 0.41 +1.3 672,611 - Psest_0620 0.41 -4.5 672,611 - Psest_0620 0.41 +1.3 672,611 - Psest_0620 0.41 -2.6 672,611 - Psest_0620 0.41 +1.2 672,611 - Psest_0620 0.41 +1.3 672,611 - Psest_0620 0.41 +2.1 672,611 - Psest_0620 0.41 -0.5 672,611 - Psest_0620 0.41 -1.9 672,611 - Psest_0620 0.41 -1.3 672,611 - Psest_0620 0.41 +1.2 672,611 - Psest_0620 0.41 -3.1 672,611 - Psest_0620 0.41 +0.9 672,611 - Psest_0620 0.41 -3.2 672,611 - Psest_0620 0.41 +2.6 672,611 - Psest_0620 0.41 -0.3 672,611 - Psest_0620 0.41 -1.4 672,611 - Psest_0620 0.41 +2.5 672,634 + Psest_0620 0.46 -0.2 672,634 + Psest_0620 0.46 +0.4 672,634 + Psest_0620 0.46 -1.0 672,635 - Psest_0620 0.46 +1.6 672,635 - Psest_0620 0.46 -0.8 672,651 + Psest_0620 0.49 +2.4 672,652 - Psest_0620 0.50 +1.1 672,689 + Psest_0620 0.58 -0.6 672,689 + Psest_0620 0.58 +0.2 672,689 + Psest_0620 0.58 -0.7 672,689 + Psest_0620 0.58 -0.3 672,689 + Psest_0620 0.58 +0.1 672,690 - Psest_0620 0.58 -0.1 672,690 - Psest_0620 0.58 +2.7 672,692 + Psest_0620 0.58 +1.2 672,693 - Psest_0620 0.58 +2.4 672,693 - Psest_0620 0.58 -0.9 672,750 + Psest_0620 0.71 -2.5 672,750 + Psest_0620 0.71 -1.6 672,884 + -3.1 672,885 - +2.1 672,885 - +1.5 672,885 - +0.0 672,885 - -0.2 673,009 - Psest_0621 0.18 -0.5 673,009 - Psest_0621 0.18 -1.1 673,053 + Psest_0621 0.24 -2.4 673,053 + Psest_0621 0.24 +0.4 673,053 + Psest_0621 0.24 -3.1 673,053 + Psest_0621 0.24 -2.3 673,053 + Psest_0621 0.24 +1.7 673,053 + Psest_0621 0.24 -2.7 673,054 - Psest_0621 0.24 +0.5 673,054 - Psest_0621 0.24 +2.2 673,121 - Psest_0621 0.34 +0.2 673,246 + Psest_0621 0.52 -0.1 673,246 + Psest_0621 0.52 -2.3 673,246 + Psest_0621 0.52 -1.8 673,246 + Psest_0621 0.52 -0.3 673,246 + Psest_0621 0.52 +2.3 673,246 + Psest_0621 0.52 +0.5 673,246 + Psest_0621 0.52 +1.4 673,246 + Psest_0621 0.52 +0.8 673,246 + Psest_0621 0.52 +3.2 673,246 + Psest_0621 0.52 +1.2 673,246 + Psest_0621 0.52 +0.3 673,246 + Psest_0621 0.52 -0.2 673,247 - Psest_0621 0.53 +1.7 673,247 - Psest_0621 0.53 +0.2 673,247 - Psest_0621 0.53 -0.1 673,247 - Psest_0621 0.53 -0.0 673,247 - Psest_0621 0.53 +2.5 673,247 - Psest_0621 0.53 +1.4 673,247 - Psest_0621 0.53 +1.3 673,247 - Psest_0621 0.53 +2.8 673,247 - Psest_0621 0.53 +0.5 673,247 - Psest_0621 0.53 +2.9 673,247 - Psest_0621 0.53 +1.4 673,247 - Psest_0621 0.53 -2.6 673,247 - Psest_0621 0.53 -0.2 673,247 - Psest_0621 0.53 +1.4 673,247 - Psest_0621 0.53 -0.2 673,247 - Psest_0621 0.53 +2.0 673,247 - Psest_0621 0.53 +2.6 673,247 - Psest_0621 0.53 +0.9 673,247 - Psest_0621 0.53 -1.8 673,247 - Psest_0621 0.53 -3.3 673,247 - Psest_0621 0.53 -1.8 673,247 - Psest_0621 0.53 -1.9 673,247 - Psest_0621 0.53 +1.7 673,247 - Psest_0621 0.53 +1.9 673,247 - Psest_0621 0.53 +0.0 673,247 - Psest_0621 0.53 +0.8 673,247 - Psest_0621 0.53 -0.3 673,247 - Psest_0621 0.53 -2.4 673,247 - Psest_0621 0.53 +1.3 673,247 - Psest_0621 0.53 -2.3 673,247 - Psest_0621 0.53 -1.0 673,247 - Psest_0621 0.53 +1.0 673,247 - Psest_0621 0.53 -1.6 673,247 - Psest_0621 0.53 +1.2 673,250 + Psest_0621 0.53 +1.8 673,250 + Psest_0621 0.53 +1.2 673,251 - Psest_0621 0.53 +0.5 673,251 - Psest_0621 0.53 +1.4 673,304 + Psest_0621 0.61 +0.9 673,304 + Psest_0621 0.61 +0.1 673,304 + Psest_0621 0.61 +0.9 673,304 + Psest_0621 0.61 -2.4 673,305 - Psest_0621 0.61 +2.7 673,305 - Psest_0621 0.61 -2.6 673,496 + Psest_0621 0.89 +0.1 673,496 + Psest_0621 0.89 +0.1 673,496 + Psest_0621 0.89 +1.4 673,496 + Psest_0621 0.89 +1.9 673,496 + Psest_0621 0.89 -1.1 673,497 - Psest_0621 0.89 -1.6 673,497 - Psest_0621 0.89 -0.1 673,593 + +0.9 673,593 + +0.7 673,593 + +1.1 673,594 - -4.1 673,594 - -1.7 673,594 - +0.4 673,594 - +1.3 673,616 + Psest_0622 0.11 -2.3 673,617 - Psest_0622 0.12 +2.6 673,735 + Psest_0622 0.39 +2.5 673,736 - Psest_0622 0.39 -0.4 673,736 - Psest_0622 0.39 -3.3 673,736 - Psest_0622 0.39 -1.4 673,792 + Psest_0622 0.52 +1.9 673,793 - Psest_0622 0.52 +2.4
Or see this region's nucleotide sequence