Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0591

Experiment: Polymyxin B sulfate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0590 and Psest_0591 are separated by 105 nucleotidesPsest_0591 and Psest_0592 are separated by 90 nucleotidesPsest_0592 and Psest_0593 are separated by 23 nucleotidesPsest_0593 and Psest_0594 are separated by 32 nucleotides Psest_0590: Psest_0590 - hypothetical protein, at 640,338 to 642,005 _0590 Psest_0591: Psest_0591 - heavy metal sensor kinase, at 642,111 to 643,484 _0591 Psest_0592: Psest_0592 - hypothetical protein, at 643,575 to 643,805 _0592 Psest_0593: Psest_0593 - Protein of unknown function (DUF2933)., at 643,829 to 644,086 _0593 Psest_0594: Psest_0594 - hypothetical protein, at 644,119 to 644,436 _0594 Position (kb) 642 643 644Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 641.176 kb on + strand, within Psest_0590at 641.177 kb on - strand, within Psest_0590at 641.219 kb on - strand, within Psest_0590at 641.257 kb on + strand, within Psest_0590at 641.257 kb on + strand, within Psest_0590at 641.278 kb on + strand, within Psest_0590at 641.278 kb on + strand, within Psest_0590at 641.279 kb on - strand, within Psest_0590at 641.279 kb on - strand, within Psest_0590at 641.279 kb on - strand, within Psest_0590at 641.353 kb on - strand, within Psest_0590at 641.414 kb on - strand, within Psest_0590at 641.414 kb on - strand, within Psest_0590at 641.478 kb on - strand, within Psest_0590at 641.498 kb on + strand, within Psest_0590at 641.499 kb on - strand, within Psest_0590at 641.557 kb on - strand, within Psest_0590at 641.574 kb on - strand, within Psest_0590at 641.574 kb on - strand, within Psest_0590at 641.574 kb on - strand, within Psest_0590at 641.574 kb on - strand, within Psest_0590at 641.595 kb on + strand, within Psest_0590at 641.595 kb on + strand, within Psest_0590at 641.595 kb on + strand, within Psest_0590at 641.596 kb on - strand, within Psest_0590at 641.602 kb on - strand, within Psest_0590at 641.602 kb on - strand, within Psest_0590at 641.602 kb on - strand, within Psest_0590at 641.629 kb on - strand, within Psest_0590at 641.717 kb on + strand, within Psest_0590at 641.718 kb on - strand, within Psest_0590at 641.718 kb on - strand, within Psest_0590at 641.868 kb on + strandat 641.868 kb on + strandat 641.913 kb on + strandat 641.931 kb on + strandat 641.931 kb on + strandat 641.932 kb on - strandat 641.932 kb on - strandat 641.932 kb on - strandat 641.932 kb on - strandat 641.937 kb on + strandat 641.976 kb on - strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.028 kb on - strandat 642.073 kb on + strandat 642.074 kb on - strandat 642.074 kb on - strandat 642.074 kb on - strandat 642.074 kb on - strandat 642.074 kb on - strandat 642.074 kb on - strandat 642.074 kb on - strandat 642.081 kb on + strandat 642.081 kb on + strandat 642.082 kb on - strandat 642.082 kb on - strandat 642.082 kb on - strandat 642.082 kb on - strandat 642.082 kb on - strandat 642.082 kb on - strandat 642.082 kb on - strandat 642.082 kb on - strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.122 kb on + strandat 642.123 kb on - strandat 642.123 kb on - strandat 642.123 kb on - strandat 642.123 kb on - strandat 642.123 kb on - strandat 642.123 kb on - strandat 642.123 kb on - strandat 642.123 kb on - strandat 642.123 kb on - strandat 642.152 kb on + strandat 642.201 kb on + strandat 642.215 kb on + strandat 642.215 kb on + strandat 642.216 kb on - strandat 642.274 kb on + strand, within Psest_0591at 642.274 kb on + strand, within Psest_0591at 642.275 kb on - strand, within Psest_0591at 642.366 kb on + strand, within Psest_0591at 642.366 kb on + strand, within Psest_0591at 642.366 kb on + strand, within Psest_0591at 642.366 kb on + strand, within Psest_0591at 642.367 kb on - strand, within Psest_0591at 642.367 kb on - strand, within Psest_0591at 642.400 kb on + strand, within Psest_0591at 642.420 kb on + strand, within Psest_0591at 642.420 kb on + strand, within Psest_0591at 642.420 kb on + strand, within Psest_0591at 642.420 kb on + strand, within Psest_0591at 642.420 kb on + strand, within Psest_0591at 642.421 kb on - strand, within Psest_0591at 642.421 kb on - strand, within Psest_0591at 642.421 kb on - strand, within Psest_0591at 642.492 kb on + strand, within Psest_0591at 642.520 kb on + strand, within Psest_0591at 642.520 kb on + strand, within Psest_0591at 642.521 kb on - strand, within Psest_0591at 642.521 kb on - strand, within Psest_0591at 642.578 kb on + strand, within Psest_0591at 642.578 kb on + strand, within Psest_0591at 642.609 kb on + strand, within Psest_0591at 642.609 kb on + strand, within Psest_0591at 642.609 kb on + strand, within Psest_0591at 642.609 kb on + strand, within Psest_0591at 642.610 kb on - strand, within Psest_0591at 642.610 kb on - strand, within Psest_0591at 642.610 kb on - strand, within Psest_0591at 642.641 kb on + strand, within Psest_0591at 642.642 kb on - strand, within Psest_0591at 642.642 kb on - strand, within Psest_0591at 642.662 kb on - strand, within Psest_0591at 642.676 kb on + strand, within Psest_0591at 642.748 kb on - strand, within Psest_0591at 642.878 kb on + strand, within Psest_0591at 642.928 kb on - strand, within Psest_0591at 642.998 kb on + strand, within Psest_0591at 643.064 kb on - strand, within Psest_0591at 643.067 kb on + strand, within Psest_0591at 643.068 kb on - strand, within Psest_0591at 643.087 kb on - strand, within Psest_0591at 643.098 kb on + strand, within Psest_0591at 643.098 kb on + strand, within Psest_0591at 643.109 kb on + strand, within Psest_0591at 643.220 kb on + strand, within Psest_0591at 643.220 kb on + strand, within Psest_0591at 643.227 kb on + strand, within Psest_0591at 643.227 kb on + strand, within Psest_0591at 643.228 kb on - strand, within Psest_0591at 643.230 kb on + strand, within Psest_0591at 643.231 kb on - strand, within Psest_0591at 643.231 kb on - strand, within Psest_0591at 643.317 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.322 kb on + strand, within Psest_0591at 643.330 kb on - strand, within Psest_0591at 643.489 kb on - strandat 643.489 kb on - strandat 643.558 kb on - strandat 643.571 kb on + strandat 643.572 kb on - strandat 643.572 kb on - strandat 643.572 kb on - strandat 643.576 kb on + strandat 643.577 kb on - strandat 643.577 kb on - strandat 643.577 kb on - strandat 643.682 kb on + strand, within Psest_0592at 643.733 kb on + strand, within Psest_0592at 643.733 kb on + strand, within Psest_0592at 643.734 kb on - strand, within Psest_0592at 643.809 kb on - strandat 643.809 kb on - strandat 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.903 kb on + strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.904 kb on - strand, within Psest_0593at 643.916 kb on + strand, within Psest_0593at 644.005 kb on - strand, within Psest_0593at 644.076 kb on - strandat 644.088 kb on + strandat 644.088 kb on + strandat 644.089 kb on - strandat 644.093 kb on - strandat 644.106 kb on + strandat 644.107 kb on - strandat 644.107 kb on - strandat 644.164 kb on - strand, within Psest_0594at 644.201 kb on + strand, within Psest_0594at 644.202 kb on - strand, within Psest_0594at 644.221 kb on - strand, within Psest_0594at 644.221 kb on - strand, within Psest_0594at 644.226 kb on + strand, within Psest_0594at 644.226 kb on + strand, within Psest_0594at 644.226 kb on + strand, within Psest_0594at 644.228 kb on + strand, within Psest_0594at 644.228 kb on + strand, within Psest_0594at 644.307 kb on + strand, within Psest_0594at 644.307 kb on + strand, within Psest_0594at 644.339 kb on - strand, within Psest_0594at 644.339 kb on - strand, within Psest_0594at 644.352 kb on + strand, within Psest_0594at 644.352 kb on + strand, within Psest_0594at 644.403 kb on + strand, within Psest_0594at 644.455 kb on - strandat 644.467 kb on + strandat 644.467 kb on + strandat 644.468 kb on - strandat 644.484 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
remove
641,176 + Psest_0590 0.50 +1.3
641,177 - Psest_0590 0.50 +0.7
641,219 - Psest_0590 0.53 +2.4
641,257 + Psest_0590 0.55 +1.6
641,257 + Psest_0590 0.55 +0.2
641,278 + Psest_0590 0.56 +0.9
641,278 + Psest_0590 0.56 +0.9
641,279 - Psest_0590 0.56 -4.2
641,279 - Psest_0590 0.56 +1.2
641,279 - Psest_0590 0.56 -3.9
641,353 - Psest_0590 0.61 -2.2
641,414 - Psest_0590 0.65 -2.6
641,414 - Psest_0590 0.65 +0.6
641,478 - Psest_0590 0.68 -1.2
641,498 + Psest_0590 0.70 +1.6
641,499 - Psest_0590 0.70 +0.4
641,557 - Psest_0590 0.73 -0.8
641,574 - Psest_0590 0.74 +1.2
641,574 - Psest_0590 0.74 +1.6
641,574 - Psest_0590 0.74 +1.3
641,574 - Psest_0590 0.74 -0.1
641,595 + Psest_0590 0.75 -3.3
641,595 + Psest_0590 0.75 -0.3
641,595 + Psest_0590 0.75 +2.8
641,596 - Psest_0590 0.75 -2.0
641,602 - Psest_0590 0.76 -2.4
641,602 - Psest_0590 0.76 +0.8
641,602 - Psest_0590 0.76 -0.1
641,629 - Psest_0590 0.77 -2.0
641,717 + Psest_0590 0.83 +0.8
641,718 - Psest_0590 0.83 +1.1
641,718 - Psest_0590 0.83 +1.1
641,868 + +0.9
641,868 + +0.9
641,913 + -1.5
641,931 + +3.0
641,931 + -0.0
641,932 - -1.5
641,932 - +0.1
641,932 - +0.1
641,932 - +0.1
641,937 + +0.5
641,976 - +1.3
642,027 + -1.2
642,027 + +1.8
642,027 + +0.3
642,027 + +0.2
642,027 + -1.8
642,027 + -1.6
642,027 + -2.9
642,027 + +2.0
642,027 + +2.7
642,027 + +1.8
642,027 + +2.0
642,027 + -2.2
642,027 + +1.8
642,027 + -1.6
642,027 + +2.0
642,027 + +1.4
642,027 + -2.1
642,027 + -0.5
642,028 - -2.0
642,028 - +0.6
642,028 - -3.4
642,028 - +0.5
642,028 - +0.9
642,028 - -1.1
642,028 - -2.8
642,028 - -0.5
642,028 - +2.0
642,028 - +2.1
642,028 - -0.4
642,028 - +1.0
642,028 - -1.8
642,028 - -2.9
642,028 - +2.8
642,028 - -0.6
642,028 - -0.9
642,073 + +0.6
642,074 - +1.0
642,074 - +2.7
642,074 - -0.0
642,074 - -0.3
642,074 - +1.6
642,074 - +0.9
642,074 - -4.2
642,081 + +1.6
642,081 + +1.0
642,082 - +0.7
642,082 - -3.5
642,082 - -3.6
642,082 - -3.2
642,082 - -0.3
642,082 - +0.3
642,082 - +1.7
642,082 - +1.5
642,122 + -2.4
642,122 + +0.5
642,122 + -3.2
642,122 + -4.1
642,122 + -1.2
642,122 + -3.1
642,122 + -1.4
642,122 + -0.7
642,122 + +0.2
642,122 + +1.6
642,122 + +0.3
642,122 + +1.2
642,122 + +0.5
642,122 + +0.2
642,123 - +1.1
642,123 - +0.2
642,123 - -0.5
642,123 - +0.5
642,123 - -3.6
642,123 - -2.6
642,123 - +0.6
642,123 - -3.8
642,123 - +0.4
642,152 + +0.6
642,201 + -3.0
642,215 + +1.7
642,215 + +1.6
642,216 - +1.9
642,274 + Psest_0591 0.12 -3.8
642,274 + Psest_0591 0.12 -2.8
642,275 - Psest_0591 0.12 -1.6
642,366 + Psest_0591 0.19 -2.7
642,366 + Psest_0591 0.19 -0.3
642,366 + Psest_0591 0.19 -1.8
642,366 + Psest_0591 0.19 -0.3
642,367 - Psest_0591 0.19 +0.4
642,367 - Psest_0591 0.19 -1.7
642,400 + Psest_0591 0.21 +0.7
642,420 + Psest_0591 0.22 -0.8
642,420 + Psest_0591 0.22 -1.8
642,420 + Psest_0591 0.22 +0.8
642,420 + Psest_0591 0.22 +1.4
642,420 + Psest_0591 0.22 +1.0
642,421 - Psest_0591 0.23 -0.1
642,421 - Psest_0591 0.23 +0.4
642,421 - Psest_0591 0.23 -0.5
642,492 + Psest_0591 0.28 +0.7
642,520 + Psest_0591 0.30 +0.3
642,520 + Psest_0591 0.30 -0.9
642,521 - Psest_0591 0.30 -2.8
642,521 - Psest_0591 0.30 +1.6
642,578 + Psest_0591 0.34 +1.0
642,578 + Psest_0591 0.34 +0.0
642,609 + Psest_0591 0.36 -2.0
642,609 + Psest_0591 0.36 -0.2
642,609 + Psest_0591 0.36 -0.8
642,609 + Psest_0591 0.36 -3.0
642,610 - Psest_0591 0.36 -3.4
642,610 - Psest_0591 0.36 +0.3
642,610 - Psest_0591 0.36 -1.2
642,641 + Psest_0591 0.39 -0.7
642,642 - Psest_0591 0.39 -0.4
642,642 - Psest_0591 0.39 -1.4
642,662 - Psest_0591 0.40 -3.5
642,676 + Psest_0591 0.41 +0.9
642,748 - Psest_0591 0.46 +1.3
642,878 + Psest_0591 0.56 -3.2
642,928 - Psest_0591 0.59 -3.4
642,998 + Psest_0591 0.65 -1.2
643,064 - Psest_0591 0.69 +1.2
643,067 + Psest_0591 0.70 -3.0
643,068 - Psest_0591 0.70 -1.2
643,087 - Psest_0591 0.71 -3.5
643,098 + Psest_0591 0.72 -3.4
643,098 + Psest_0591 0.72 +0.1
643,109 + Psest_0591 0.73 -3.1
643,220 + Psest_0591 0.81 -1.2
643,220 + Psest_0591 0.81 -1.5
643,227 + Psest_0591 0.81 +1.4
643,227 + Psest_0591 0.81 +0.6
643,228 - Psest_0591 0.81 -3.5
643,230 + Psest_0591 0.81 +0.8
643,231 - Psest_0591 0.82 -1.4
643,231 - Psest_0591 0.82 -0.7
643,317 + Psest_0591 0.88 -3.8
643,322 + Psest_0591 0.88 +0.3
643,322 + Psest_0591 0.88 +2.6
643,322 + Psest_0591 0.88 +1.8
643,322 + Psest_0591 0.88 +1.4
643,322 + Psest_0591 0.88 -2.3
643,322 + Psest_0591 0.88 -1.2
643,330 - Psest_0591 0.89 -3.5
643,489 - -3.2
643,489 - +1.1
643,558 - -1.0
643,571 + -2.2
643,572 - +1.7
643,572 - +0.6
643,572 - +0.9
643,576 + +1.6
643,577 - -0.2
643,577 - +0.4
643,577 - -1.2
643,682 + Psest_0592 0.46 +2.9
643,733 + Psest_0592 0.68 -1.2
643,733 + Psest_0592 0.68 -4.5
643,734 - Psest_0592 0.69 +0.5
643,809 - +0.6
643,809 - -2.0
643,903 + Psest_0593 0.29 -1.9
643,903 + Psest_0593 0.29 -0.8
643,903 + Psest_0593 0.29 -1.2
643,903 + Psest_0593 0.29 -2.3
643,903 + Psest_0593 0.29 -2.2
643,903 + Psest_0593 0.29 -2.6
643,903 + Psest_0593 0.29 +1.1
643,903 + Psest_0593 0.29 +0.7
643,903 + Psest_0593 0.29 -2.8
643,903 + Psest_0593 0.29 +0.3
643,903 + Psest_0593 0.29 +1.5
643,904 - Psest_0593 0.29 -0.9
643,904 - Psest_0593 0.29 +2.9
643,904 - Psest_0593 0.29 +0.0
643,904 - Psest_0593 0.29 -0.9
643,904 - Psest_0593 0.29 +2.3
643,904 - Psest_0593 0.29 -2.8
643,904 - Psest_0593 0.29 +1.6
643,904 - Psest_0593 0.29 +0.8
643,904 - Psest_0593 0.29 +0.1
643,904 - Psest_0593 0.29 +0.4
643,916 + Psest_0593 0.34 +0.6
644,005 - Psest_0593 0.68 +0.2
644,076 - +3.1
644,088 + +0.3
644,088 + +0.9
644,089 - +0.4
644,093 - -1.6
644,106 + +2.4
644,107 - +1.8
644,107 - -1.1
644,164 - Psest_0594 0.14 -0.1
644,201 + Psest_0594 0.26 +1.5
644,202 - Psest_0594 0.26 -0.0
644,221 - Psest_0594 0.32 +2.9
644,221 - Psest_0594 0.32 +0.4
644,226 + Psest_0594 0.34 +2.3
644,226 + Psest_0594 0.34 -3.6
644,226 + Psest_0594 0.34 +0.4
644,228 + Psest_0594 0.34 -1.4
644,228 + Psest_0594 0.34 +2.2
644,307 + Psest_0594 0.59 -0.1
644,307 + Psest_0594 0.59 -0.0
644,339 - Psest_0594 0.69 -2.0
644,339 - Psest_0594 0.69 +3.1
644,352 + Psest_0594 0.73 +1.3
644,352 + Psest_0594 0.73 +3.2
644,403 + Psest_0594 0.89 +0.7
644,455 - -3.8
644,467 + -3.5
644,467 + -1.1
644,468 - -0.7
644,484 - -3.2

Or see this region's nucleotide sequence