Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4236 and Psest_4237 are separated by 147 nucleotides Psest_4237 and Psest_4238 are separated by 301 nucleotides Psest_4238 and Psest_4239 are separated by 37 nucleotides
Psest_4236: Psest_4236 - Predicted signal transduction protein, at 4,419,599 to 4,420,807
_4236
Psest_4237: Psest_4237 - succinate-semialdehyde dehydrogenase, at 4,420,955 to 4,422,403
_4237
Psest_4238: Psest_4238 - Cytochrome c556, at 4,422,705 to 4,423,169
_4238
Psest_4239: Psest_4239 - Cytochrome b, at 4,423,207 to 4,423,902
_4239
Position (kb) 4420
4421
4422
4423 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4420.313 kb on + strand, within Psest_4236 at 4420.314 kb on - strand, within Psest_4236 at 4420.467 kb on + strand, within Psest_4236 at 4420.467 kb on + strand, within Psest_4236 at 4420.767 kb on + strand at 4420.767 kb on + strand at 4420.768 kb on - strand at 4420.974 kb on + strand at 4420.974 kb on + strand at 4420.975 kb on - strand at 4420.975 kb on - strand at 4420.975 kb on - strand at 4420.975 kb on - strand at 4420.990 kb on - strand at 4421.004 kb on + strand at 4421.005 kb on - strand at 4421.005 kb on - strand at 4421.005 kb on - strand at 4421.101 kb on - strand, within Psest_4237 at 4421.149 kb on - strand, within Psest_4237 at 4421.149 kb on - strand, within Psest_4237 at 4421.154 kb on + strand, within Psest_4237 at 4421.154 kb on + strand, within Psest_4237 at 4421.155 kb on - strand, within Psest_4237 at 4421.155 kb on - strand, within Psest_4237 at 4421.155 kb on - strand, within Psest_4237 at 4421.155 kb on - strand, within Psest_4237 at 4421.304 kb on + strand, within Psest_4237 at 4421.304 kb on + strand, within Psest_4237 at 4421.305 kb on - strand, within Psest_4237 at 4421.305 kb on - strand, within Psest_4237 at 4421.375 kb on - strand, within Psest_4237 at 4421.375 kb on - strand, within Psest_4237 at 4421.499 kb on + strand, within Psest_4237 at 4421.499 kb on + strand, within Psest_4237 at 4421.499 kb on + strand, within Psest_4237 at 4421.499 kb on + strand, within Psest_4237 at 4421.500 kb on - strand, within Psest_4237 at 4421.500 kb on - strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.517 kb on + strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.518 kb on - strand, within Psest_4237 at 4421.560 kb on - strand, within Psest_4237 at 4421.560 kb on - strand, within Psest_4237 at 4421.726 kb on + strand, within Psest_4237 at 4421.727 kb on - strand, within Psest_4237 at 4422.024 kb on + strand, within Psest_4237 at 4422.024 kb on + strand, within Psest_4237 at 4422.024 kb on + strand, within Psest_4237 at 4422.024 kb on + strand, within Psest_4237 at 4422.025 kb on - strand, within Psest_4237 at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.363 kb on + strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.364 kb on - strand at 4422.425 kb on - strand at 4422.527 kb on + strand at 4422.527 kb on + strand at 4422.528 kb on - strand at 4422.528 kb on - strand at 4422.594 kb on + strand at 4422.594 kb on + strand at 4422.594 kb on + strand at 4422.594 kb on + strand at 4422.594 kb on + strand at 4422.594 kb on + strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.595 kb on - strand at 4422.635 kb on + strand at 4422.648 kb on - strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.649 kb on + strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.650 kb on - strand at 4422.945 kb on + strand, within Psest_4238
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 4,420,313 + Psest_4236 0.59 +2.4 4,420,314 - Psest_4236 0.59 +1.4 4,420,467 + Psest_4236 0.72 +1.4 4,420,467 + Psest_4236 0.72 -0.9 4,420,767 + -0.4 4,420,767 + +0.3 4,420,768 - +1.4 4,420,974 + +0.0 4,420,974 + +2.9 4,420,975 - +0.8 4,420,975 - +0.4 4,420,975 - +0.4 4,420,975 - +1.4 4,420,990 - +0.4 4,421,004 + -0.2 4,421,005 - -0.2 4,421,005 - +1.4 4,421,005 - +0.4 4,421,101 - Psest_4237 0.10 -0.6 4,421,149 - Psest_4237 0.13 +1.4 4,421,149 - Psest_4237 0.13 -0.2 4,421,154 + Psest_4237 0.14 +1.8 4,421,154 + Psest_4237 0.14 +2.4 4,421,155 - Psest_4237 0.14 +1.4 4,421,155 - Psest_4237 0.14 +1.0 4,421,155 - Psest_4237 0.14 +1.0 4,421,155 - Psest_4237 0.14 +1.8 4,421,304 + Psest_4237 0.24 +1.4 4,421,304 + Psest_4237 0.24 +2.4 4,421,305 - Psest_4237 0.24 +0.5 4,421,305 - Psest_4237 0.24 -0.4 4,421,375 - Psest_4237 0.29 +1.4 4,421,375 - Psest_4237 0.29 -0.6 4,421,499 + Psest_4237 0.38 -1.2 4,421,499 + Psest_4237 0.38 +1.4 4,421,499 + Psest_4237 0.38 +1.7 4,421,499 + Psest_4237 0.38 +1.0 4,421,500 - Psest_4237 0.38 +0.8 4,421,500 - Psest_4237 0.38 +0.8 4,421,517 + Psest_4237 0.39 +0.3 4,421,517 + Psest_4237 0.39 +1.6 4,421,517 + Psest_4237 0.39 -0.4 4,421,517 + Psest_4237 0.39 +0.2 4,421,517 + Psest_4237 0.39 +0.7 4,421,517 + Psest_4237 0.39 +4.0 4,421,517 + Psest_4237 0.39 +1.4 4,421,517 + Psest_4237 0.39 -0.2 4,421,517 + Psest_4237 0.39 +0.1 4,421,517 + Psest_4237 0.39 -0.6 4,421,517 + Psest_4237 0.39 +3.7 4,421,517 + Psest_4237 0.39 -1.6 4,421,517 + Psest_4237 0.39 +3.8 4,421,517 + Psest_4237 0.39 +1.7 4,421,517 + Psest_4237 0.39 +1.0 4,421,517 + Psest_4237 0.39 +2.7 4,421,517 + Psest_4237 0.39 -0.6 4,421,517 + Psest_4237 0.39 -0.2 4,421,517 + Psest_4237 0.39 -0.9 4,421,517 + Psest_4237 0.39 -0.6 4,421,518 - Psest_4237 0.39 +0.1 4,421,518 - Psest_4237 0.39 -0.2 4,421,518 - Psest_4237 0.39 +1.4 4,421,518 - Psest_4237 0.39 +1.4 4,421,518 - Psest_4237 0.39 +1.4 4,421,518 - Psest_4237 0.39 +1.7 4,421,518 - Psest_4237 0.39 -0.2 4,421,518 - Psest_4237 0.39 +1.4 4,421,518 - Psest_4237 0.39 +0.1 4,421,518 - Psest_4237 0.39 +3.4 4,421,518 - Psest_4237 0.39 -0.2 4,421,518 - Psest_4237 0.39 -1.3 4,421,518 - Psest_4237 0.39 +3.4 4,421,518 - Psest_4237 0.39 +1.6 4,421,518 - Psest_4237 0.39 +0.2 4,421,518 - Psest_4237 0.39 -0.2 4,421,518 - Psest_4237 0.39 +2.0 4,421,518 - Psest_4237 0.39 +1.4 4,421,518 - Psest_4237 0.39 +3.0 4,421,560 - Psest_4237 0.42 -0.4 4,421,560 - Psest_4237 0.42 -0.6 4,421,726 + Psest_4237 0.53 -0.9 4,421,727 - Psest_4237 0.53 +1.4 4,422,024 + Psest_4237 0.74 -0.9 4,422,024 + Psest_4237 0.74 +1.4 4,422,024 + Psest_4237 0.74 -0.6 4,422,024 + Psest_4237 0.74 +1.7 4,422,025 - Psest_4237 0.74 +1.2 4,422,363 + +3.4 4,422,363 + +2.4 4,422,363 + +1.4 4,422,363 + +2.4 4,422,363 + +3.0 4,422,363 + +2.4 4,422,363 + +1.4 4,422,364 - +2.0 4,422,364 - +1.8 4,422,364 - +1.1 4,422,364 - -1.6 4,422,364 - -0.6 4,422,364 - +0.9 4,422,364 - +2.4 4,422,425 - -0.4 4,422,527 + -0.0 4,422,527 + +3.7 4,422,528 - -0.2 4,422,528 - +0.4 4,422,594 + +2.4 4,422,594 + +2.1 4,422,594 + +0.8 4,422,594 + -0.6 4,422,594 + +0.4 4,422,594 + +0.4 4,422,595 - +0.5 4,422,595 - -1.8 4,422,595 - +0.4 4,422,595 - +3.2 4,422,595 - +0.1 4,422,595 - +0.2 4,422,595 - +0.2 4,422,595 - +0.4 4,422,635 + +0.1 4,422,648 - +1.4 4,422,649 + +2.0 4,422,649 + +1.4 4,422,649 + -1.2 4,422,649 + +1.4 4,422,649 + +0.4 4,422,649 + -0.2 4,422,649 + +1.4 4,422,649 + +0.4 4,422,649 + -0.2 4,422,649 + -0.2 4,422,649 + +0.4 4,422,650 - +0.2 4,422,650 - +0.1 4,422,650 - +0.6 4,422,650 - -1.8 4,422,650 - -0.0 4,422,650 - -0.8 4,422,650 - -0.6 4,422,650 - -0.2 4,422,650 - +0.4 4,422,945 + Psest_4238 0.52 +1.4
Or see this region's nucleotide sequence