Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0404

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0403 and Psest_0404 overlap by 4 nucleotidesPsest_0404 and Psest_0405 overlap by 4 nucleotidesPsest_0405 and Psest_0406 overlap by 41 nucleotides Psest_0403: Psest_0403 - lycopene cyclase, at 438,067 to 439,236 _0403 Psest_0404: Psest_0404 - phytoene desaturase, at 439,233 to 440,738 _0404 Psest_0405: Psest_0405 - Phytoene/squalene synthetase, at 440,735 to 441,661 _0405 Psest_0406: Psest_0406 - Fatty acid hydroxylase superfamily., at 441,621 to 442,154 _0406 Position (kb) 439 440 441Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 438.258 kb on + strand, within Psest_0403at 438.258 kb on + strand, within Psest_0403at 438.258 kb on + strand, within Psest_0403at 438.259 kb on - strand, within Psest_0403at 438.259 kb on - strand, within Psest_0403at 438.259 kb on - strand, within Psest_0403at 438.259 kb on - strand, within Psest_0403at 438.259 kb on - strand, within Psest_0403at 438.283 kb on + strand, within Psest_0403at 438.625 kb on + strand, within Psest_0403at 438.625 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.673 kb on + strand, within Psest_0403at 438.673 kb on + strand, within Psest_0403at 438.674 kb on - strand, within Psest_0403at 438.674 kb on - strand, within Psest_0403at 438.718 kb on - strand, within Psest_0403at 438.727 kb on + strand, within Psest_0403at 438.727 kb on + strand, within Psest_0403at 438.728 kb on - strand, within Psest_0403at 438.728 kb on - strand, within Psest_0403at 438.886 kb on + strand, within Psest_0403at 438.887 kb on - strand, within Psest_0403at 438.977 kb on - strand, within Psest_0403at 439.082 kb on - strand, within Psest_0403at 439.114 kb on + strand, within Psest_0403at 439.228 kb on + strandat 439.229 kb on - strandat 439.244 kb on + strandat 439.245 kb on - strandat 439.245 kb on - strandat 439.245 kb on - strandat 439.362 kb on + strandat 439.362 kb on + strandat 439.363 kb on - strandat 439.363 kb on - strandat 439.385 kb on + strand, within Psest_0404at 439.385 kb on + strand, within Psest_0404at 439.385 kb on + strand, within Psest_0404at 439.386 kb on - strand, within Psest_0404at 439.386 kb on - strand, within Psest_0404at 439.471 kb on - strand, within Psest_0404at 439.500 kb on + strand, within Psest_0404at 439.537 kb on - strand, within Psest_0404at 439.620 kb on + strand, within Psest_0404at 439.635 kb on + strand, within Psest_0404at 439.635 kb on + strand, within Psest_0404at 439.635 kb on + strand, within Psest_0404at 439.635 kb on + strand, within Psest_0404at 439.647 kb on + strand, within Psest_0404at 439.647 kb on + strand, within Psest_0404at 439.740 kb on + strand, within Psest_0404at 439.741 kb on - strand, within Psest_0404at 439.842 kb on + strand, within Psest_0404at 439.842 kb on + strand, within Psest_0404at 439.842 kb on + strand, within Psest_0404at 439.843 kb on - strand, within Psest_0404at 439.843 kb on - strand, within Psest_0404at 439.843 kb on - strand, within Psest_0404at 440.079 kb on + strand, within Psest_0404at 440.079 kb on + strand, within Psest_0404at 440.079 kb on + strand, within Psest_0404at 440.079 kb on + strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.089 kb on + strand, within Psest_0404at 440.089 kb on + strand, within Psest_0404at 440.090 kb on - strand, within Psest_0404at 440.090 kb on - strand, within Psest_0404at 440.292 kb on + strand, within Psest_0404at 440.292 kb on + strand, within Psest_0404at 440.292 kb on + strand, within Psest_0404at 440.293 kb on - strand, within Psest_0404at 440.293 kb on - strand, within Psest_0404at 440.293 kb on - strand, within Psest_0404at 440.293 kb on - strand, within Psest_0404at 440.352 kb on + strand, within Psest_0404at 440.352 kb on + strand, within Psest_0404at 440.352 kb on + strand, within Psest_0404at 440.419 kb on - strand, within Psest_0404at 440.439 kb on + strand, within Psest_0404at 440.439 kb on + strand, within Psest_0404at 440.440 kb on - strand, within Psest_0404at 440.454 kb on + strand, within Psest_0404at 440.454 kb on + strand, within Psest_0404at 440.454 kb on + strand, within Psest_0404at 440.454 kb on + strand, within Psest_0404at 440.454 kb on + strand, within Psest_0404at 440.454 kb on + strand, within Psest_0404at 440.454 kb on + strand, within Psest_0404at 440.454 kb on + strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.455 kb on - strand, within Psest_0404at 440.622 kb on + strandat 440.622 kb on + strandat 440.622 kb on + strandat 440.622 kb on + strandat 440.622 kb on + strandat 440.622 kb on + strandat 440.622 kb on + strandat 440.622 kb on + strandat 440.622 kb on + strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.623 kb on - strandat 440.624 kb on + strandat 440.849 kb on + strand, within Psest_0405at 440.849 kb on + strand, within Psest_0405at 440.975 kb on + strand, within Psest_0405at 440.975 kb on + strand, within Psest_0405at 440.976 kb on - strand, within Psest_0405at 441.099 kb on - strand, within Psest_0405at 441.099 kb on - strand, within Psest_0405at 441.099 kb on - strand, within Psest_0405at 441.131 kb on + strand, within Psest_0405at 441.131 kb on + strand, within Psest_0405at 441.291 kb on - strand, within Psest_0405at 441.349 kb on - strand, within Psest_0405at 441.407 kb on + strand, within Psest_0405at 441.411 kb on - strand, within Psest_0405

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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438,258 + Psest_0403 0.16 +0.7
438,258 + Psest_0403 0.16 -0.3
438,258 + Psest_0403 0.16 +0.3
438,259 - Psest_0403 0.16 -1.0
438,259 - Psest_0403 0.16 -1.7
438,259 - Psest_0403 0.16 -0.7
438,259 - Psest_0403 0.16 -0.7
438,259 - Psest_0403 0.16 +1.3
438,283 + Psest_0403 0.18 +1.3
438,625 + Psest_0403 0.48 +0.8
438,625 + Psest_0403 0.48 +0.2
438,670 + Psest_0403 0.52 -1.9
438,670 + Psest_0403 0.52 -1.3
438,670 + Psest_0403 0.52 -1.3
438,670 + Psest_0403 0.52 -1.5
438,670 + Psest_0403 0.52 -0.1
438,670 + Psest_0403 0.52 +1.3
438,670 + Psest_0403 0.52 +2.9
438,670 + Psest_0403 0.52 +0.3
438,670 + Psest_0403 0.52 +1.1
438,671 - Psest_0403 0.52 -1.0
438,671 - Psest_0403 0.52 +3.9
438,671 - Psest_0403 0.52 +0.4
438,671 - Psest_0403 0.52 +1.3
438,671 - Psest_0403 0.52 +1.9
438,671 - Psest_0403 0.52 -0.5
438,671 - Psest_0403 0.52 +1.3
438,671 - Psest_0403 0.52 +0.7
438,671 - Psest_0403 0.52 +0.3
438,671 - Psest_0403 0.52 -0.3
438,671 - Psest_0403 0.52 +0.3
438,671 - Psest_0403 0.52 -0.7
438,671 - Psest_0403 0.52 +1.0
438,673 + Psest_0403 0.52 +2.4
438,673 + Psest_0403 0.52 -0.6
438,674 - Psest_0403 0.52 -0.0
438,674 - Psest_0403 0.52 +1.3
438,718 - Psest_0403 0.56 +0.1
438,727 + Psest_0403 0.56 -0.3
438,727 + Psest_0403 0.56 +2.6
438,728 - Psest_0403 0.56 +0.8
438,728 - Psest_0403 0.56 -1.3
438,886 + Psest_0403 0.70 -0.7
438,887 - Psest_0403 0.70 +1.3
438,977 - Psest_0403 0.78 -0.7
439,082 - Psest_0403 0.87 +1.3
439,114 + Psest_0403 0.89 +0.4
439,228 + +1.3
439,229 - -0.7
439,244 + -0.4
439,245 - -0.3
439,245 - +0.3
439,245 - -0.2
439,362 + -0.7
439,362 + -0.3
439,363 - +1.0
439,363 - +2.6
439,385 + Psest_0404 0.10 +0.9
439,385 + Psest_0404 0.10 +1.3
439,385 + Psest_0404 0.10 +1.0
439,386 - Psest_0404 0.10 +0.4
439,386 - Psest_0404 0.10 +0.7
439,471 - Psest_0404 0.16 +0.3
439,500 + Psest_0404 0.18 +2.3
439,537 - Psest_0404 0.20 +1.6
439,620 + Psest_0404 0.26 +1.0
439,635 + Psest_0404 0.27 -0.9
439,635 + Psest_0404 0.27 +0.5
439,635 + Psest_0404 0.27 +0.3
439,635 + Psest_0404 0.27 +2.9
439,647 + Psest_0404 0.27 -1.7
439,647 + Psest_0404 0.27 +1.4
439,740 + Psest_0404 0.34 -0.0
439,741 - Psest_0404 0.34 +0.6
439,842 + Psest_0404 0.40 +2.9
439,842 + Psest_0404 0.40 -1.9
439,842 + Psest_0404 0.40 -1.3
439,843 - Psest_0404 0.41 -0.6
439,843 - Psest_0404 0.41 -1.3
439,843 - Psest_0404 0.41 +0.7
440,079 + Psest_0404 0.56 -1.7
440,079 + Psest_0404 0.56 +0.3
440,079 + Psest_0404 0.56 +0.2
440,079 + Psest_0404 0.56 -0.5
440,080 - Psest_0404 0.56 +2.1
440,080 - Psest_0404 0.56 -1.2
440,080 - Psest_0404 0.56 +1.3
440,080 - Psest_0404 0.56 +1.8
440,080 - Psest_0404 0.56 -1.0
440,080 - Psest_0404 0.56 +1.3
440,080 - Psest_0404 0.56 +0.3
440,080 - Psest_0404 0.56 -0.3
440,080 - Psest_0404 0.56 +0.3
440,080 - Psest_0404 0.56 +1.7
440,080 - Psest_0404 0.56 +1.9
440,080 - Psest_0404 0.56 -0.4
440,089 + Psest_0404 0.57 +1.7
440,089 + Psest_0404 0.57 -1.5
440,090 - Psest_0404 0.57 +1.9
440,090 - Psest_0404 0.57 +0.3
440,292 + Psest_0404 0.70 +0.3
440,292 + Psest_0404 0.70 -0.7
440,292 + Psest_0404 0.70 +1.1
440,293 - Psest_0404 0.70 -1.3
440,293 - Psest_0404 0.70 +0.3
440,293 - Psest_0404 0.70 +2.0
440,293 - Psest_0404 0.70 -1.3
440,352 + Psest_0404 0.74 -0.9
440,352 + Psest_0404 0.74 +0.7
440,352 + Psest_0404 0.74 +1.3
440,419 - Psest_0404 0.79 +1.3
440,439 + Psest_0404 0.80 -1.5
440,439 + Psest_0404 0.80 +1.5
440,440 - Psest_0404 0.80 +1.3
440,454 + Psest_0404 0.81 -0.7
440,454 + Psest_0404 0.81 +1.3
440,454 + Psest_0404 0.81 +0.3
440,454 + Psest_0404 0.81 +3.1
440,454 + Psest_0404 0.81 +1.3
440,454 + Psest_0404 0.81 -0.7
440,454 + Psest_0404 0.81 -0.3
440,454 + Psest_0404 0.81 +0.1
440,455 - Psest_0404 0.81 +0.9
440,455 - Psest_0404 0.81 +0.9
440,455 - Psest_0404 0.81 -0.7
440,455 - Psest_0404 0.81 -1.4
440,455 - Psest_0404 0.81 -0.5
440,455 - Psest_0404 0.81 -1.2
440,455 - Psest_0404 0.81 +1.5
440,455 - Psest_0404 0.81 +0.1
440,455 - Psest_0404 0.81 -0.7
440,455 - Psest_0404 0.81 +1.3
440,455 - Psest_0404 0.81 +1.0
440,455 - Psest_0404 0.81 +1.7
440,455 - Psest_0404 0.81 +0.7
440,455 - Psest_0404 0.81 +2.5
440,455 - Psest_0404 0.81 +2.2
440,455 - Psest_0404 0.81 +1.4
440,455 - Psest_0404 0.81 -1.3
440,622 + -0.1
440,622 + -0.2
440,622 + -1.5
440,622 + +1.3
440,622 + +0.3
440,622 + +0.3
440,622 + -0.3
440,622 + +0.3
440,622 + -0.5
440,623 - -0.7
440,623 - +2.0
440,623 - +2.3
440,623 - +0.0
440,623 - -1.3
440,623 - +0.9
440,623 - +0.6
440,623 - -0.3
440,623 - +1.3
440,623 - +1.3
440,623 - +0.1
440,623 - +0.8
440,624 + +0.9
440,849 + Psest_0405 0.12 -1.0
440,849 + Psest_0405 0.12 -1.3
440,975 + Psest_0405 0.26 -1.3
440,975 + Psest_0405 0.26 +0.9
440,976 - Psest_0405 0.26 +1.8
441,099 - Psest_0405 0.39 -0.6
441,099 - Psest_0405 0.39 +2.6
441,099 - Psest_0405 0.39 +2.0
441,131 + Psest_0405 0.43 -0.4
441,131 + Psest_0405 0.43 -2.5
441,291 - Psest_0405 0.60 +1.2
441,349 - Psest_0405 0.66 -0.1
441,407 + Psest_0405 0.72 +0.2
441,411 - Psest_0405 0.73 +2.1

Or see this region's nucleotide sequence