Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0403

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0402 and Psest_0403 overlap by 11 nucleotidesPsest_0403 and Psest_0404 overlap by 4 nucleotides Psest_0402: Psest_0402 - glycosyltransferase, MGT family, at 436,791 to 438,077 _0402 Psest_0403: Psest_0403 - lycopene cyclase, at 438,067 to 439,236 _0403 Psest_0404: Psest_0404 - phytoene desaturase, at 439,233 to 440,738 _0404 Position (kb) 438 439 440Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 437.298 kb on + strand, within Psest_0402at 437.298 kb on + strand, within Psest_0402at 437.298 kb on + strand, within Psest_0402at 437.298 kb on + strand, within Psest_0402at 437.401 kb on + strand, within Psest_0402at 437.401 kb on + strand, within Psest_0402at 438.258 kb on + strand, within Psest_0403at 438.258 kb on + strand, within Psest_0403at 438.258 kb on + strand, within Psest_0403at 438.259 kb on - strand, within Psest_0403at 438.259 kb on - strand, within Psest_0403at 438.259 kb on - strand, within Psest_0403at 438.259 kb on - strand, within Psest_0403at 438.259 kb on - strand, within Psest_0403at 438.283 kb on + strand, within Psest_0403at 438.625 kb on + strand, within Psest_0403at 438.625 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.670 kb on + strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.671 kb on - strand, within Psest_0403at 438.673 kb on + strand, within Psest_0403at 438.673 kb on + strand, within Psest_0403at 438.674 kb on - strand, within Psest_0403at 438.674 kb on - strand, within Psest_0403at 438.718 kb on - strand, within Psest_0403at 438.727 kb on + strand, within Psest_0403at 438.727 kb on + strand, within Psest_0403at 438.728 kb on - strand, within Psest_0403at 438.728 kb on - strand, within Psest_0403at 438.886 kb on + strand, within Psest_0403at 438.887 kb on - strand, within Psest_0403at 438.977 kb on - strand, within Psest_0403at 439.082 kb on - strand, within Psest_0403at 439.114 kb on + strand, within Psest_0403at 439.228 kb on + strandat 439.229 kb on - strandat 439.244 kb on + strandat 439.245 kb on - strandat 439.245 kb on - strandat 439.245 kb on - strandat 439.362 kb on + strandat 439.362 kb on + strandat 439.363 kb on - strandat 439.363 kb on - strandat 439.385 kb on + strand, within Psest_0404at 439.385 kb on + strand, within Psest_0404at 439.385 kb on + strand, within Psest_0404at 439.386 kb on - strand, within Psest_0404at 439.386 kb on - strand, within Psest_0404at 439.471 kb on - strand, within Psest_0404at 439.500 kb on + strand, within Psest_0404at 439.537 kb on - strand, within Psest_0404at 439.620 kb on + strand, within Psest_0404at 439.635 kb on + strand, within Psest_0404at 439.635 kb on + strand, within Psest_0404at 439.635 kb on + strand, within Psest_0404at 439.635 kb on + strand, within Psest_0404at 439.647 kb on + strand, within Psest_0404at 439.647 kb on + strand, within Psest_0404at 439.740 kb on + strand, within Psest_0404at 439.741 kb on - strand, within Psest_0404at 439.842 kb on + strand, within Psest_0404at 439.842 kb on + strand, within Psest_0404at 439.842 kb on + strand, within Psest_0404at 439.843 kb on - strand, within Psest_0404at 439.843 kb on - strand, within Psest_0404at 439.843 kb on - strand, within Psest_0404at 440.079 kb on + strand, within Psest_0404at 440.079 kb on + strand, within Psest_0404at 440.079 kb on + strand, within Psest_0404at 440.079 kb on + strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.080 kb on - strand, within Psest_0404at 440.089 kb on + strand, within Psest_0404at 440.089 kb on + strand, within Psest_0404at 440.090 kb on - strand, within Psest_0404at 440.090 kb on - strand, within Psest_0404

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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437,298 + Psest_0402 0.39 -0.7
437,298 + Psest_0402 0.39 -0.7
437,298 + Psest_0402 0.39 -1.5
437,298 + Psest_0402 0.39 -1.0
437,401 + Psest_0402 0.47 -0.4
437,401 + Psest_0402 0.47 +1.3
438,258 + Psest_0403 0.16 +0.7
438,258 + Psest_0403 0.16 -0.3
438,258 + Psest_0403 0.16 +0.3
438,259 - Psest_0403 0.16 -1.0
438,259 - Psest_0403 0.16 -1.7
438,259 - Psest_0403 0.16 -0.7
438,259 - Psest_0403 0.16 -0.7
438,259 - Psest_0403 0.16 +1.3
438,283 + Psest_0403 0.18 +1.3
438,625 + Psest_0403 0.48 +0.8
438,625 + Psest_0403 0.48 +0.2
438,670 + Psest_0403 0.52 -1.9
438,670 + Psest_0403 0.52 -1.3
438,670 + Psest_0403 0.52 -1.3
438,670 + Psest_0403 0.52 -1.5
438,670 + Psest_0403 0.52 -0.1
438,670 + Psest_0403 0.52 +1.3
438,670 + Psest_0403 0.52 +2.9
438,670 + Psest_0403 0.52 +0.3
438,670 + Psest_0403 0.52 +1.1
438,671 - Psest_0403 0.52 -1.0
438,671 - Psest_0403 0.52 +3.9
438,671 - Psest_0403 0.52 +0.4
438,671 - Psest_0403 0.52 +1.3
438,671 - Psest_0403 0.52 +1.9
438,671 - Psest_0403 0.52 -0.5
438,671 - Psest_0403 0.52 +1.3
438,671 - Psest_0403 0.52 +0.7
438,671 - Psest_0403 0.52 +0.3
438,671 - Psest_0403 0.52 -0.3
438,671 - Psest_0403 0.52 +0.3
438,671 - Psest_0403 0.52 -0.7
438,671 - Psest_0403 0.52 +1.0
438,673 + Psest_0403 0.52 +2.4
438,673 + Psest_0403 0.52 -0.6
438,674 - Psest_0403 0.52 -0.0
438,674 - Psest_0403 0.52 +1.3
438,718 - Psest_0403 0.56 +0.1
438,727 + Psest_0403 0.56 -0.3
438,727 + Psest_0403 0.56 +2.6
438,728 - Psest_0403 0.56 +0.8
438,728 - Psest_0403 0.56 -1.3
438,886 + Psest_0403 0.70 -0.7
438,887 - Psest_0403 0.70 +1.3
438,977 - Psest_0403 0.78 -0.7
439,082 - Psest_0403 0.87 +1.3
439,114 + Psest_0403 0.89 +0.4
439,228 + +1.3
439,229 - -0.7
439,244 + -0.4
439,245 - -0.3
439,245 - +0.3
439,245 - -0.2
439,362 + -0.7
439,362 + -0.3
439,363 - +1.0
439,363 - +2.6
439,385 + Psest_0404 0.10 +0.9
439,385 + Psest_0404 0.10 +1.3
439,385 + Psest_0404 0.10 +1.0
439,386 - Psest_0404 0.10 +0.4
439,386 - Psest_0404 0.10 +0.7
439,471 - Psest_0404 0.16 +0.3
439,500 + Psest_0404 0.18 +2.3
439,537 - Psest_0404 0.20 +1.6
439,620 + Psest_0404 0.26 +1.0
439,635 + Psest_0404 0.27 -0.9
439,635 + Psest_0404 0.27 +0.5
439,635 + Psest_0404 0.27 +0.3
439,635 + Psest_0404 0.27 +2.9
439,647 + Psest_0404 0.27 -1.7
439,647 + Psest_0404 0.27 +1.4
439,740 + Psest_0404 0.34 -0.0
439,741 - Psest_0404 0.34 +0.6
439,842 + Psest_0404 0.40 +2.9
439,842 + Psest_0404 0.40 -1.9
439,842 + Psest_0404 0.40 -1.3
439,843 - Psest_0404 0.41 -0.6
439,843 - Psest_0404 0.41 -1.3
439,843 - Psest_0404 0.41 +0.7
440,079 + Psest_0404 0.56 -1.7
440,079 + Psest_0404 0.56 +0.3
440,079 + Psest_0404 0.56 +0.2
440,079 + Psest_0404 0.56 -0.5
440,080 - Psest_0404 0.56 +2.1
440,080 - Psest_0404 0.56 -1.2
440,080 - Psest_0404 0.56 +1.3
440,080 - Psest_0404 0.56 +1.8
440,080 - Psest_0404 0.56 -1.0
440,080 - Psest_0404 0.56 +1.3
440,080 - Psest_0404 0.56 +0.3
440,080 - Psest_0404 0.56 -0.3
440,080 - Psest_0404 0.56 +0.3
440,080 - Psest_0404 0.56 +1.7
440,080 - Psest_0404 0.56 +1.9
440,080 - Psest_0404 0.56 -0.4
440,089 + Psest_0404 0.57 +1.7
440,089 + Psest_0404 0.57 -1.5
440,090 - Psest_0404 0.57 +1.9
440,090 - Psest_0404 0.57 +0.3

Or see this region's nucleotide sequence