Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4076

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4075 and Psest_4076 are separated by 9 nucleotidesPsest_4076 and Psest_4077 are separated by 169 nucleotides Psest_4075: Psest_4075 - symporter for L-glutamate, L-glutamine, and L-proline (from data), at 4,250,321 to 4,251,580 _4075 Psest_4076: Psest_4076 - hypothetical protein, at 4,251,590 to 4,252,408 _4076 Psest_4077: Psest_4077 - amino acid carrier protein, at 4,252,578 to 4,253,999 _4077 Position (kb) 4251 4252 4253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4250.591 kb on + strand, within Psest_4075at 4250.591 kb on + strand, within Psest_4075at 4250.591 kb on + strand, within Psest_4075at 4250.592 kb on - strand, within Psest_4075at 4250.592 kb on - strand, within Psest_4075at 4250.592 kb on - strand, within Psest_4075at 4250.592 kb on - strand, within Psest_4075at 4250.592 kb on - strand, within Psest_4075at 4250.592 kb on - strand, within Psest_4075at 4250.592 kb on - strand, within Psest_4075at 4250.592 kb on - strand, within Psest_4075at 4250.592 kb on - strand, within Psest_4075at 4250.882 kb on + strand, within Psest_4075at 4250.882 kb on + strand, within Psest_4075at 4250.882 kb on + strand, within Psest_4075at 4250.882 kb on + strand, within Psest_4075at 4250.882 kb on + strand, within Psest_4075at 4250.882 kb on + strand, within Psest_4075at 4250.882 kb on + strand, within Psest_4075at 4250.883 kb on - strand, within Psest_4075at 4251.005 kb on + strand, within Psest_4075at 4251.005 kb on + strand, within Psest_4075at 4251.005 kb on + strand, within Psest_4075at 4251.005 kb on + strand, within Psest_4075at 4251.005 kb on + strand, within Psest_4075at 4251.005 kb on + strand, within Psest_4075at 4251.006 kb on - strand, within Psest_4075at 4251.006 kb on - strand, within Psest_4075at 4251.006 kb on - strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.027 kb on + strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.028 kb on - strand, within Psest_4075at 4251.254 kb on + strand, within Psest_4075at 4251.254 kb on + strand, within Psest_4075at 4251.254 kb on + strand, within Psest_4075at 4251.255 kb on - strand, within Psest_4075at 4251.255 kb on - strand, within Psest_4075at 4251.557 kb on + strandat 4251.558 kb on - strandat 4251.558 kb on - strandat 4251.558 kb on - strandat 4251.558 kb on - strandat 4251.679 kb on - strand, within Psest_4076at 4251.679 kb on - strand, within Psest_4076at 4251.679 kb on - strand, within Psest_4076at 4251.679 kb on - strand, within Psest_4076at 4251.730 kb on - strand, within Psest_4076at 4251.730 kb on - strand, within Psest_4076at 4251.730 kb on - strand, within Psest_4076at 4251.790 kb on + strand, within Psest_4076at 4251.790 kb on + strand, within Psest_4076at 4251.873 kb on + strand, within Psest_4076at 4251.999 kb on + strand, within Psest_4076at 4251.999 kb on + strand, within Psest_4076at 4251.999 kb on + strand, within Psest_4076at 4251.999 kb on + strand, within Psest_4076at 4252.000 kb on - strand, within Psest_4076at 4252.071 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.081 kb on - strand, within Psest_4076at 4252.081 kb on - strand, within Psest_4076at 4252.081 kb on - strand, within Psest_4076at 4252.302 kb on + strand, within Psest_4076at 4252.302 kb on + strand, within Psest_4076at 4252.302 kb on + strand, within Psest_4076at 4252.303 kb on - strand, within Psest_4076at 4252.303 kb on - strand, within Psest_4076at 4252.303 kb on - strand, within Psest_4076at 4252.303 kb on - strand, within Psest_4076at 4252.490 kb on - strandat 4252.887 kb on + strand, within Psest_4077at 4252.887 kb on + strand, within Psest_4077at 4252.887 kb on + strand, within Psest_4077at 4252.887 kb on + strand, within Psest_4077at 4252.887 kb on + strand, within Psest_4077at 4252.888 kb on - strand, within Psest_4077at 4252.888 kb on - strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.915 kb on - strand, within Psest_4077at 4252.915 kb on - strand, within Psest_4077at 4252.962 kb on + strand, within Psest_4077at 4252.962 kb on + strand, within Psest_4077at 4252.962 kb on + strand, within Psest_4077at 4252.962 kb on + strand, within Psest_4077at 4252.962 kb on + strand, within Psest_4077at 4252.963 kb on - strand, within Psest_4077at 4253.212 kb on - strand, within Psest_4077

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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4,250,591 + Psest_4075 0.21 -1.0
4,250,591 + Psest_4075 0.21 -0.8
4,250,591 + Psest_4075 0.21 -0.7
4,250,592 - Psest_4075 0.22 +0.3
4,250,592 - Psest_4075 0.22 +0.3
4,250,592 - Psest_4075 0.22 +2.1
4,250,592 - Psest_4075 0.22 +0.6
4,250,592 - Psest_4075 0.22 +0.7
4,250,592 - Psest_4075 0.22 -3.3
4,250,592 - Psest_4075 0.22 -1.5
4,250,592 - Psest_4075 0.22 +0.7
4,250,592 - Psest_4075 0.22 -0.7
4,250,882 + Psest_4075 0.45 -0.4
4,250,882 + Psest_4075 0.45 -0.2
4,250,882 + Psest_4075 0.45 -0.2
4,250,882 + Psest_4075 0.45 +2.3
4,250,882 + Psest_4075 0.45 +0.3
4,250,882 + Psest_4075 0.45 +0.6
4,250,882 + Psest_4075 0.45 -0.1
4,250,883 - Psest_4075 0.45 +0.2
4,251,005 + Psest_4075 0.54 +3.3
4,251,005 + Psest_4075 0.54 +0.2
4,251,005 + Psest_4075 0.54 -0.7
4,251,005 + Psest_4075 0.54 -1.3
4,251,005 + Psest_4075 0.54 -0.5
4,251,005 + Psest_4075 0.54 -0.9
4,251,006 - Psest_4075 0.54 -0.2
4,251,006 - Psest_4075 0.54 -0.7
4,251,006 - Psest_4075 0.54 +0.3
4,251,027 + Psest_4075 0.56 -0.7
4,251,027 + Psest_4075 0.56 +0.7
4,251,027 + Psest_4075 0.56 -0.2
4,251,027 + Psest_4075 0.56 -0.7
4,251,027 + Psest_4075 0.56 -1.5
4,251,027 + Psest_4075 0.56 -1.5
4,251,027 + Psest_4075 0.56 -1.5
4,251,027 + Psest_4075 0.56 +0.2
4,251,027 + Psest_4075 0.56 -0.1
4,251,027 + Psest_4075 0.56 +0.6
4,251,027 + Psest_4075 0.56 +1.0
4,251,027 + Psest_4075 0.56 +0.7
4,251,027 + Psest_4075 0.56 +0.9
4,251,027 + Psest_4075 0.56 -0.2
4,251,028 - Psest_4075 0.56 -1.2
4,251,028 - Psest_4075 0.56 -0.1
4,251,028 - Psest_4075 0.56 -0.5
4,251,028 - Psest_4075 0.56 -0.7
4,251,028 - Psest_4075 0.56 +1.2
4,251,028 - Psest_4075 0.56 -0.1
4,251,028 - Psest_4075 0.56 +3.2
4,251,028 - Psest_4075 0.56 +0.1
4,251,028 - Psest_4075 0.56 -2.0
4,251,028 - Psest_4075 0.56 -0.7
4,251,028 - Psest_4075 0.56 +1.2
4,251,028 - Psest_4075 0.56 -0.7
4,251,028 - Psest_4075 0.56 -1.5
4,251,028 - Psest_4075 0.56 +1.1
4,251,028 - Psest_4075 0.56 -0.7
4,251,028 - Psest_4075 0.56 +1.3
4,251,254 + Psest_4075 0.74 +1.4
4,251,254 + Psest_4075 0.74 -3.2
4,251,254 + Psest_4075 0.74 +0.2
4,251,255 - Psest_4075 0.74 -0.2
4,251,255 - Psest_4075 0.74 +0.6
4,251,557 + -2.7
4,251,558 - +1.8
4,251,558 - -1.2
4,251,558 - +1.0
4,251,558 - -0.2
4,251,679 - Psest_4076 0.11 +4.8
4,251,679 - Psest_4076 0.11 -1.8
4,251,679 - Psest_4076 0.11 +1.3
4,251,679 - Psest_4076 0.11 -1.7
4,251,730 - Psest_4076 0.17 -0.4
4,251,730 - Psest_4076 0.17 -0.7
4,251,730 - Psest_4076 0.17 -1.5
4,251,790 + Psest_4076 0.24 -2.5
4,251,790 + Psest_4076 0.24 +0.0
4,251,873 + Psest_4076 0.35 +0.7
4,251,999 + Psest_4076 0.50 -3.7
4,251,999 + Psest_4076 0.50 -3.5
4,251,999 + Psest_4076 0.50 +4.6
4,251,999 + Psest_4076 0.50 +0.2
4,252,000 - Psest_4076 0.50 +0.1
4,252,071 + Psest_4076 0.59 +0.1
4,252,080 + Psest_4076 0.60 -2.0
4,252,080 + Psest_4076 0.60 -0.1
4,252,080 + Psest_4076 0.60 -0.5
4,252,080 + Psest_4076 0.60 +0.5
4,252,080 + Psest_4076 0.60 +0.2
4,252,080 + Psest_4076 0.60 -1.5
4,252,080 + Psest_4076 0.60 -0.8
4,252,081 - Psest_4076 0.60 +0.2
4,252,081 - Psest_4076 0.60 +0.2
4,252,081 - Psest_4076 0.60 +0.3
4,252,302 + Psest_4076 0.87 +1.5
4,252,302 + Psest_4076 0.87 -1.5
4,252,302 + Psest_4076 0.87 +0.6
4,252,303 - Psest_4076 0.87 +0.9
4,252,303 - Psest_4076 0.87 +0.3
4,252,303 - Psest_4076 0.87 +0.0
4,252,303 - Psest_4076 0.87 +1.0
4,252,490 - +2.2
4,252,887 + Psest_4077 0.22 +1.1
4,252,887 + Psest_4077 0.22 +0.5
4,252,887 + Psest_4077 0.22 -1.2
4,252,887 + Psest_4077 0.22 -3.4
4,252,887 + Psest_4077 0.22 -0.2
4,252,888 - Psest_4077 0.22 +0.3
4,252,888 - Psest_4077 0.22 -1.5
4,252,914 + Psest_4077 0.24 -0.2
4,252,914 + Psest_4077 0.24 -0.4
4,252,914 + Psest_4077 0.24 -0.6
4,252,914 + Psest_4077 0.24 -0.5
4,252,914 + Psest_4077 0.24 +0.5
4,252,914 + Psest_4077 0.24 -0.3
4,252,914 + Psest_4077 0.24 -0.7
4,252,914 + Psest_4077 0.24 -1.2
4,252,915 - Psest_4077 0.24 -1.5
4,252,915 - Psest_4077 0.24 +0.6
4,252,962 + Psest_4077 0.27 -0.7
4,252,962 + Psest_4077 0.27 -0.8
4,252,962 + Psest_4077 0.27 +0.4
4,252,962 + Psest_4077 0.27 -1.0
4,252,962 + Psest_4077 0.27 -1.0
4,252,963 - Psest_4077 0.27 -1.7
4,253,212 - Psest_4077 0.45 -0.1

Or see this region's nucleotide sequence