Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3930

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3928 and Psest_3929 are separated by 161 nucleotidesPsest_3929 and Psest_3930 overlap by 4 nucleotidesPsest_3930 and Psest_3931 are separated by 169 nucleotides Psest_3928: Psest_3928 - glutamine synthetase, type I, at 4,099,738 to 4,101,144 _3928 Psest_3929: Psest_3929 - hypothetical protein, at 4,101,306 to 4,101,860 _3929 Psest_3930: Psest_3930 - Penicillin-Binding Protein C-terminus Family., at 4,101,857 to 4,102,486 _3930 Psest_3931: Psest_3931 - Signal transduction histidine kinase, nitrogen specific, at 4,102,656 to 4,103,738 _3931 Position (kb) 4101 4102 4103Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4101.194 kb on + strandat 4101.194 kb on + strandat 4101.195 kb on - strandat 4101.312 kb on - strandat 4101.366 kb on + strand, within Psest_3929at 4101.366 kb on + strand, within Psest_3929at 4101.366 kb on + strand, within Psest_3929at 4101.366 kb on + strand, within Psest_3929at 4101.366 kb on + strand, within Psest_3929at 4101.366 kb on + strand, within Psest_3929at 4101.367 kb on - strand, within Psest_3929at 4101.367 kb on - strand, within Psest_3929at 4101.367 kb on - strand, within Psest_3929at 4101.367 kb on - strand, within Psest_3929at 4101.372 kb on + strand, within Psest_3929at 4101.372 kb on + strand, within Psest_3929at 4101.373 kb on - strand, within Psest_3929at 4101.439 kb on + strand, within Psest_3929at 4101.529 kb on - strand, within Psest_3929at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.926 kb on + strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.927 kb on - strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.932 kb on + strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.933 kb on - strand, within Psest_3930at 4101.934 kb on + strand, within Psest_3930at 4101.934 kb on + strand, within Psest_3930at 4101.935 kb on - strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.936 kb on + strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4101.937 kb on - strand, within Psest_3930at 4102.089 kb on - strand, within Psest_3930at 4102.157 kb on - strand, within Psest_3930at 4102.196 kb on + strand, within Psest_3930at 4102.196 kb on + strand, within Psest_3930at 4102.409 kb on + strand, within Psest_3930at 4102.409 kb on + strand, within Psest_3930at 4102.409 kb on + strand, within Psest_3930at 4102.482 kb on + strandat 4102.482 kb on + strandat 4102.482 kb on + strandat 4102.482 kb on + strandat 4102.482 kb on + strandat 4102.483 kb on - strandat 4102.483 kb on - strandat 4102.483 kb on - strandat 4102.483 kb on - strandat 4102.740 kb on + strandat 4102.740 kb on + strandat 4102.740 kb on + strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.741 kb on - strandat 4102.907 kb on + strand, within Psest_3931at 4102.932 kb on + strand, within Psest_3931at 4102.984 kb on + strand, within Psest_3931at 4102.984 kb on + strand, within Psest_3931at 4102.984 kb on + strand, within Psest_3931at 4102.985 kb on - strand, within Psest_3931at 4102.985 kb on - strand, within Psest_3931at 4102.985 kb on - strand, within Psest_3931at 4103.393 kb on + strand, within Psest_3931at 4103.393 kb on + strand, within Psest_3931at 4103.393 kb on + strand, within Psest_3931

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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4,101,194 + +1.3
4,101,194 + +0.5
4,101,195 - +0.9
4,101,312 - +0.6
4,101,366 + Psest_3929 0.11 -1.0
4,101,366 + Psest_3929 0.11 +0.5
4,101,366 + Psest_3929 0.11 -1.5
4,101,366 + Psest_3929 0.11 -2.4
4,101,366 + Psest_3929 0.11 +0.8
4,101,366 + Psest_3929 0.11 -0.9
4,101,367 - Psest_3929 0.11 +1.3
4,101,367 - Psest_3929 0.11 +1.5
4,101,367 - Psest_3929 0.11 -2.3
4,101,367 - Psest_3929 0.11 -3.4
4,101,372 + Psest_3929 0.12 -2.0
4,101,372 + Psest_3929 0.12 +1.1
4,101,373 - Psest_3929 0.12 +0.2
4,101,439 + Psest_3929 0.24 -3.3
4,101,529 - Psest_3929 0.40 -0.0
4,101,926 + Psest_3930 0.11 -2.1
4,101,926 + Psest_3930 0.11 -0.7
4,101,926 + Psest_3930 0.11 +0.4
4,101,926 + Psest_3930 0.11 -1.0
4,101,926 + Psest_3930 0.11 +3.2
4,101,926 + Psest_3930 0.11 +0.9
4,101,927 - Psest_3930 0.11 -2.1
4,101,927 - Psest_3930 0.11 +0.4
4,101,927 - Psest_3930 0.11 -2.1
4,101,927 - Psest_3930 0.11 +1.0
4,101,927 - Psest_3930 0.11 +0.0
4,101,927 - Psest_3930 0.11 -1.7
4,101,927 - Psest_3930 0.11 -0.2
4,101,927 - Psest_3930 0.11 -0.3
4,101,927 - Psest_3930 0.11 -0.3
4,101,927 - Psest_3930 0.11 -2.4
4,101,927 - Psest_3930 0.11 +0.5
4,101,927 - Psest_3930 0.11 +0.6
4,101,927 - Psest_3930 0.11 +1.4
4,101,927 - Psest_3930 0.11 +0.2
4,101,932 + Psest_3930 0.12 +2.0
4,101,932 + Psest_3930 0.12 -1.9
4,101,932 + Psest_3930 0.12 +2.8
4,101,932 + Psest_3930 0.12 +1.2
4,101,932 + Psest_3930 0.12 +1.3
4,101,932 + Psest_3930 0.12 -3.6
4,101,932 + Psest_3930 0.12 +0.8
4,101,932 + Psest_3930 0.12 -3.1
4,101,932 + Psest_3930 0.12 +2.0
4,101,932 + Psest_3930 0.12 -0.1
4,101,932 + Psest_3930 0.12 +1.5
4,101,933 - Psest_3930 0.12 -0.8
4,101,933 - Psest_3930 0.12 +1.3
4,101,933 - Psest_3930 0.12 +1.6
4,101,933 - Psest_3930 0.12 +1.1
4,101,933 - Psest_3930 0.12 -1.9
4,101,933 - Psest_3930 0.12 +1.4
4,101,933 - Psest_3930 0.12 -0.7
4,101,933 - Psest_3930 0.12 -0.7
4,101,933 - Psest_3930 0.12 +1.9
4,101,933 - Psest_3930 0.12 -2.4
4,101,933 - Psest_3930 0.12 +3.6
4,101,933 - Psest_3930 0.12 +0.7
4,101,933 - Psest_3930 0.12 -0.1
4,101,933 - Psest_3930 0.12 -0.7
4,101,934 + Psest_3930 0.12 +0.9
4,101,934 + Psest_3930 0.12 +0.2
4,101,935 - Psest_3930 0.12 -0.0
4,101,936 + Psest_3930 0.13 +2.9
4,101,936 + Psest_3930 0.13 +3.8
4,101,936 + Psest_3930 0.13 -0.5
4,101,936 + Psest_3930 0.13 -0.4
4,101,936 + Psest_3930 0.13 -0.1
4,101,936 + Psest_3930 0.13 +0.0
4,101,936 + Psest_3930 0.13 -1.2
4,101,936 + Psest_3930 0.13 +3.1
4,101,936 + Psest_3930 0.13 +0.6
4,101,936 + Psest_3930 0.13 +1.1
4,101,936 + Psest_3930 0.13 +0.6
4,101,936 + Psest_3930 0.13 +2.0
4,101,936 + Psest_3930 0.13 +1.0
4,101,936 + Psest_3930 0.13 -1.9
4,101,936 + Psest_3930 0.13 +0.5
4,101,936 + Psest_3930 0.13 +1.0
4,101,936 + Psest_3930 0.13 -0.0
4,101,936 + Psest_3930 0.13 +1.3
4,101,936 + Psest_3930 0.13 +1.8
4,101,936 + Psest_3930 0.13 -2.3
4,101,936 + Psest_3930 0.13 +2.1
4,101,936 + Psest_3930 0.13 +1.7
4,101,936 + Psest_3930 0.13 +2.7
4,101,936 + Psest_3930 0.13 +1.0
4,101,936 + Psest_3930 0.13 -1.1
4,101,936 + Psest_3930 0.13 -0.3
4,101,936 + Psest_3930 0.13 -0.2
4,101,937 - Psest_3930 0.13 +1.4
4,101,937 - Psest_3930 0.13 -2.0
4,101,937 - Psest_3930 0.13 -2.4
4,101,937 - Psest_3930 0.13 +1.0
4,101,937 - Psest_3930 0.13 -1.6
4,101,937 - Psest_3930 0.13 -0.4
4,101,937 - Psest_3930 0.13 -0.3
4,101,937 - Psest_3930 0.13 -3.3
4,101,937 - Psest_3930 0.13 +0.7
4,101,937 - Psest_3930 0.13 +0.1
4,101,937 - Psest_3930 0.13 +0.7
4,101,937 - Psest_3930 0.13 -0.3
4,101,937 - Psest_3930 0.13 +1.6
4,101,937 - Psest_3930 0.13 +0.3
4,101,937 - Psest_3930 0.13 -0.4
4,101,937 - Psest_3930 0.13 +1.1
4,101,937 - Psest_3930 0.13 +1.3
4,101,937 - Psest_3930 0.13 +0.3
4,101,937 - Psest_3930 0.13 +0.3
4,101,937 - Psest_3930 0.13 +0.4
4,101,937 - Psest_3930 0.13 +0.8
4,101,937 - Psest_3930 0.13 +1.2
4,101,937 - Psest_3930 0.13 +3.0
4,101,937 - Psest_3930 0.13 +0.6
4,101,937 - Psest_3930 0.13 -0.3
4,101,937 - Psest_3930 0.13 -0.9
4,101,937 - Psest_3930 0.13 -1.9
4,101,937 - Psest_3930 0.13 +0.4
4,101,937 - Psest_3930 0.13 -1.7
4,101,937 - Psest_3930 0.13 +0.7
4,101,937 - Psest_3930 0.13 +0.5
4,101,937 - Psest_3930 0.13 +0.9
4,101,937 - Psest_3930 0.13 +1.0
4,101,937 - Psest_3930 0.13 -0.5
4,101,937 - Psest_3930 0.13 -1.2
4,101,937 - Psest_3930 0.13 +2.2
4,101,937 - Psest_3930 0.13 +3.7
4,101,937 - Psest_3930 0.13 +0.2
4,102,089 - Psest_3930 0.37 +0.0
4,102,157 - Psest_3930 0.48 +0.8
4,102,196 + Psest_3930 0.54 -1.0
4,102,196 + Psest_3930 0.54 +0.9
4,102,409 + Psest_3930 0.88 +0.9
4,102,409 + Psest_3930 0.88 +0.1
4,102,409 + Psest_3930 0.88 +0.7
4,102,482 + +2.7
4,102,482 + -0.6
4,102,482 + -1.7
4,102,482 + -1.7
4,102,482 + -0.3
4,102,483 - -0.0
4,102,483 - +1.3
4,102,483 - +3.8
4,102,483 - +0.5
4,102,740 + +1.5
4,102,740 + -0.9
4,102,740 + +0.5
4,102,741 - -2.6
4,102,741 - -1.9
4,102,741 - +2.4
4,102,741 - +1.2
4,102,741 - -2.9
4,102,741 - +0.1
4,102,741 - -1.3
4,102,741 - -2.3
4,102,907 + Psest_3931 0.23 +1.1
4,102,932 + Psest_3931 0.25 -0.7
4,102,984 + Psest_3931 0.30 +1.3
4,102,984 + Psest_3931 0.30 -3.3
4,102,984 + Psest_3931 0.30 +1.7
4,102,985 - Psest_3931 0.30 +0.2
4,102,985 - Psest_3931 0.30 -0.2
4,102,985 - Psest_3931 0.30 +2.4
4,103,393 + Psest_3931 0.68 -0.3
4,103,393 + Psest_3931 0.68 -3.4
4,103,393 + Psest_3931 0.68 -0.6

Or see this region's nucleotide sequence