Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3909 and Psest_3910 are separated by 152 nucleotides Psest_3910 and Psest_3911 are separated by 63 nucleotides Psest_3911 and Psest_3912 overlap by 8 nucleotides
Psest_3909: Psest_3909 - Glucose/sorbosone dehydrogenases, at 4,077,771 to 4,079,039
_3909
Psest_3910: Psest_3910 - Uncharacterized protein conserved in bacteria, at 4,079,192 to 4,079,650
_3910
Psest_3911: Psest_3911 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,079,714 to 4,081,102
_3911
Psest_3912: Psest_3912 - His Kinase A (phosphoacceptor) domain./HAMP domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 4,081,095 to 4,082,576
_3912
Position (kb)
4079
4080
4081
4082 Strain fitness (log2 ratio)
-2
-1
0
1 at 4078.816 kb on + strand, within Psest_3909 at 4079.164 kb on + strand at 4079.165 kb on - strand at 4079.165 kb on - strand at 4079.367 kb on - strand, within Psest_3910 at 4079.367 kb on - strand, within Psest_3910 at 4079.455 kb on - strand, within Psest_3910 at 4079.617 kb on - strand at 4079.745 kb on + strand at 4079.826 kb on + strand at 4079.826 kb on + strand at 4079.826 kb on + strand at 4079.827 kb on - strand at 4079.873 kb on - strand, within Psest_3911 at 4079.923 kb on - strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.434 kb on - strand, within Psest_3911 at 4080.434 kb on - strand, within Psest_3911 at 4081.296 kb on + strand, within Psest_3912 at 4081.489 kb on - strand, within Psest_3912
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 4,078,816 + Psest_3909 0.82 +1.7 4,079,164 + -0.7 4,079,165 - -1.3 4,079,165 - +0.3 4,079,367 - Psest_3910 0.38 -0.7 4,079,367 - Psest_3910 0.38 +1.3 4,079,455 - Psest_3910 0.57 -1.3 4,079,617 - -2.4 4,079,745 + -1.1 4,079,826 + +1.3 4,079,826 + +1.3 4,079,826 + -0.3 4,079,827 - +0.3 4,079,873 - Psest_3911 0.11 +1.3 4,079,923 - Psest_3911 0.15 -0.1 4,080,263 + Psest_3911 0.40 -1.1 4,080,263 + Psest_3911 0.40 -1.1 4,080,263 + Psest_3911 0.40 +0.5 4,080,263 + Psest_3911 0.40 +1.5 4,080,263 + Psest_3911 0.40 -0.7 4,080,264 - Psest_3911 0.40 -1.9 4,080,264 - Psest_3911 0.40 +1.3 4,080,264 - Psest_3911 0.40 +1.5 4,080,264 - Psest_3911 0.40 -0.7 4,080,264 - Psest_3911 0.40 +1.3 4,080,434 - Psest_3911 0.52 -1.7 4,080,434 - Psest_3911 0.52 +0.3 4,081,296 + Psest_3912 0.14 +1.3 4,081,489 - Psest_3912 0.27 -0.3
Or see this region's nucleotide sequence