Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0359

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0358 and Psest_0359 are separated by 116 nucleotidesPsest_0359 and Psest_0360 are separated by 57 nucleotides Psest_0358: Psest_0358 - Neutral trehalase, at 383,839 to 385,443 _0358 Psest_0359: Psest_0359 - Transcriptional regulators, at 385,560 to 386,312 _0359 Psest_0360: Psest_0360 - Predicted permease, DMT superfamily, at 386,370 to 387,272 _0360 Position (kb) 385 386 387Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 384.814 kb on + strand, within Psest_0358at 384.814 kb on + strand, within Psest_0358at 384.814 kb on + strand, within Psest_0358at 384.815 kb on - strand, within Psest_0358at 384.815 kb on - strand, within Psest_0358at 384.815 kb on - strand, within Psest_0358at 384.922 kb on + strand, within Psest_0358at 384.922 kb on + strand, within Psest_0358at 384.922 kb on + strand, within Psest_0358at 384.922 kb on + strand, within Psest_0358at 384.923 kb on - strand, within Psest_0358at 384.923 kb on - strand, within Psest_0358at 384.923 kb on - strand, within Psest_0358at 384.923 kb on - strand, within Psest_0358at 384.923 kb on - strand, within Psest_0358at 384.923 kb on - strand, within Psest_0358at 384.923 kb on - strand, within Psest_0358at 384.923 kb on - strand, within Psest_0358at 384.923 kb on - strand, within Psest_0358at 384.949 kb on + strand, within Psest_0358at 384.949 kb on + strand, within Psest_0358at 384.950 kb on - strand, within Psest_0358at 384.950 kb on - strand, within Psest_0358at 384.950 kb on - strand, within Psest_0358at 384.959 kb on - strand, within Psest_0358at 384.959 kb on - strand, within Psest_0358at 385.285 kb on + strandat 385.285 kb on + strandat 385.285 kb on + strandat 385.285 kb on + strandat 385.285 kb on + strandat 385.285 kb on + strandat 385.285 kb on + strandat 385.285 kb on + strandat 385.286 kb on - strandat 385.286 kb on - strandat 385.286 kb on - strandat 385.286 kb on - strandat 385.286 kb on - strandat 385.442 kb on - strandat 385.470 kb on + strandat 385.470 kb on + strandat 385.471 kb on - strandat 385.471 kb on - strandat 385.471 kb on - strandat 385.471 kb on - strandat 385.497 kb on + strandat 385.506 kb on + strandat 385.520 kb on + strandat 385.521 kb on - strandat 386.190 kb on + strand, within Psest_0359at 386.191 kb on - strand, within Psest_0359at 386.191 kb on - strand, within Psest_0359at 386.191 kb on - strand, within Psest_0359at 386.191 kb on - strand, within Psest_0359at 386.566 kb on + strand, within Psest_0360at 386.676 kb on + strand, within Psest_0360at 386.676 kb on + strand, within Psest_0360at 386.676 kb on + strand, within Psest_0360at 386.676 kb on + strand, within Psest_0360at 386.677 kb on - strand, within Psest_0360at 386.677 kb on - strand, within Psest_0360at 386.677 kb on - strand, within Psest_0360at 386.677 kb on - strand, within Psest_0360at 386.677 kb on - strand, within Psest_0360at 386.677 kb on - strand, within Psest_0360at 387.005 kb on - strand, within Psest_0360at 387.005 kb on - strand, within Psest_0360at 387.005 kb on - strand, within Psest_0360at 387.005 kb on - strand, within Psest_0360at 387.005 kb on - strand, within Psest_0360at 387.005 kb on - strand, within Psest_0360at 387.005 kb on - strand, within Psest_0360at 387.154 kb on - strand, within Psest_0360at 387.154 kb on - strand, within Psest_0360at 387.154 kb on - strand, within Psest_0360at 387.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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384,814 + Psest_0358 0.61 +0.6
384,814 + Psest_0358 0.61 +1.6
384,814 + Psest_0358 0.61 +4.3
384,815 - Psest_0358 0.61 -0.5
384,815 - Psest_0358 0.61 +1.4
384,815 - Psest_0358 0.61 -0.4
384,922 + Psest_0358 0.67 -0.5
384,922 + Psest_0358 0.67 +1.3
384,922 + Psest_0358 0.67 +0.3
384,922 + Psest_0358 0.67 -0.3
384,923 - Psest_0358 0.68 +0.4
384,923 - Psest_0358 0.68 +0.4
384,923 - Psest_0358 0.68 -0.4
384,923 - Psest_0358 0.68 -0.6
384,923 - Psest_0358 0.68 -0.4
384,923 - Psest_0358 0.68 +0.3
384,923 - Psest_0358 0.68 -1.8
384,923 - Psest_0358 0.68 +0.8
384,923 - Psest_0358 0.68 +1.3
384,949 + Psest_0358 0.69 -0.3
384,949 + Psest_0358 0.69 +3.0
384,950 - Psest_0358 0.69 -2.4
384,950 - Psest_0358 0.69 +0.4
384,950 - Psest_0358 0.69 -1.0
384,959 - Psest_0358 0.70 -0.4
384,959 - Psest_0358 0.70 -1.5
385,285 + +1.5
385,285 + +2.9
385,285 + +1.3
385,285 + +4.3
385,285 + +0.7
385,285 + -1.0
385,285 + +3.6
385,285 + -0.3
385,286 - -0.4
385,286 - +0.1
385,286 - -1.3
385,286 - -0.6
385,286 - +1.3
385,442 - +0.3
385,470 + -1.3
385,470 + -0.5
385,471 - +1.3
385,471 - -0.0
385,471 - -2.7
385,471 - -1.3
385,497 + -0.0
385,506 + +0.1
385,520 + +2.0
385,521 - -2.7
386,190 + Psest_0359 0.84 -0.7
386,191 - Psest_0359 0.84 +1.0
386,191 - Psest_0359 0.84 -0.9
386,191 - Psest_0359 0.84 -1.3
386,191 - Psest_0359 0.84 -0.6
386,566 + Psest_0360 0.22 +1.3
386,676 + Psest_0360 0.34 -0.4
386,676 + Psest_0360 0.34 -0.1
386,676 + Psest_0360 0.34 -0.2
386,676 + Psest_0360 0.34 +0.3
386,677 - Psest_0360 0.34 +1.3
386,677 - Psest_0360 0.34 +1.3
386,677 - Psest_0360 0.34 +0.6
386,677 - Psest_0360 0.34 +2.8
386,677 - Psest_0360 0.34 +0.3
386,677 - Psest_0360 0.34 -0.3
387,005 - Psest_0360 0.70 -0.4
387,005 - Psest_0360 0.70 +0.3
387,005 - Psest_0360 0.70 +0.3
387,005 - Psest_0360 0.70 -0.3
387,005 - Psest_0360 0.70 +1.3
387,005 - Psest_0360 0.70 +3.3
387,005 - Psest_0360 0.70 +0.3
387,154 - Psest_0360 0.87 -1.0
387,154 - Psest_0360 0.87 -0.4
387,154 - Psest_0360 0.87 -0.7
387,284 - -0.5

Or see this region's nucleotide sequence