Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3527 and Psest_3528 are separated by 164 nucleotides Psest_3528 and Psest_3529 are separated by 49 nucleotides Psest_3529 and Psest_3530 are separated by 2 nucleotides
Psest_3527: Psest_3527 - Pseudouridylate synthases, 23S RNA-specific, at 3,708,387 to 3,709,271
_3527
Psest_3528: Psest_3528 - Predicted membrane protein, at 3,709,436 to 3,709,876
_3528
Psest_3529: Psest_3529 - Uncharacterized protein conserved in bacteria, at 3,709,926 to 3,710,699
_3529
Psest_3530: Psest_3530 - Copper binding periplasmic protein CusF., at 3,710,702 to 3,711,058
_3530
Position (kb)
3709
3710 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3708.488 kb on - strand, within Psest_3527 at 3708.950 kb on - strand, within Psest_3527 at 3708.950 kb on - strand, within Psest_3527 at 3709.069 kb on + strand, within Psest_3527 at 3709.069 kb on + strand, within Psest_3527 at 3709.069 kb on + strand, within Psest_3527 at 3709.069 kb on + strand, within Psest_3527 at 3709.070 kb on - strand, within Psest_3527 at 3709.070 kb on - strand, within Psest_3527 at 3709.214 kb on + strand at 3709.282 kb on - strand at 3709.317 kb on + strand at 3709.317 kb on + strand at 3709.318 kb on - strand at 3709.318 kb on - strand at 3709.491 kb on + strand, within Psest_3528 at 3709.491 kb on + strand, within Psest_3528 at 3709.491 kb on + strand, within Psest_3528 at 3709.492 kb on - strand, within Psest_3528 at 3709.492 kb on - strand, within Psest_3528 at 3709.492 kb on - strand, within Psest_3528 at 3709.564 kb on + strand, within Psest_3528 at 3709.567 kb on - strand, within Psest_3528 at 3709.567 kb on - strand, within Psest_3528 at 3709.693 kb on + strand, within Psest_3528 at 3709.693 kb on + strand, within Psest_3528 at 3709.693 kb on + strand, within Psest_3528 at 3709.694 kb on - strand, within Psest_3528 at 3709.694 kb on - strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.695 kb on + strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.696 kb on - strand, within Psest_3528 at 3709.737 kb on + strand, within Psest_3528 at 3709.737 kb on + strand, within Psest_3528 at 3709.737 kb on + strand, within Psest_3528 at 3709.738 kb on - strand, within Psest_3528 at 3709.738 kb on - strand, within Psest_3528 at 3709.744 kb on - strand, within Psest_3528 at 3709.761 kb on - strand, within Psest_3528 at 3709.761 kb on - strand, within Psest_3528 at 3710.070 kb on + strand, within Psest_3529 at 3710.070 kb on + strand, within Psest_3529 at 3710.071 kb on - strand, within Psest_3529 at 3710.071 kb on - strand, within Psest_3529 at 3710.259 kb on - strand, within Psest_3529 at 3710.406 kb on + strand, within Psest_3529 at 3710.406 kb on + strand, within Psest_3529 at 3710.407 kb on - strand, within Psest_3529 at 3710.407 kb on - strand, within Psest_3529 at 3710.407 kb on - strand, within Psest_3529 at 3710.407 kb on - strand, within Psest_3529 at 3710.527 kb on + strand, within Psest_3529 at 3710.527 kb on + strand, within Psest_3529 at 3710.527 kb on + strand, within Psest_3529 at 3710.527 kb on + strand, within Psest_3529 at 3710.527 kb on + strand, within Psest_3529 at 3710.527 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.538 kb on + strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.539 kb on - strand, within Psest_3529 at 3710.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 3,708,488 - Psest_3527 0.11 -1.0 3,708,950 - Psest_3527 0.64 -1.2 3,708,950 - Psest_3527 0.64 -0.9 3,709,069 + Psest_3527 0.77 -3.2 3,709,069 + Psest_3527 0.77 -0.2 3,709,069 + Psest_3527 0.77 -1.1 3,709,069 + Psest_3527 0.77 +2.5 3,709,070 - Psest_3527 0.77 -0.4 3,709,070 - Psest_3527 0.77 +0.2 3,709,214 + -1.3 3,709,282 - -1.1 3,709,317 + +1.4 3,709,317 + +2.0 3,709,318 - +0.5 3,709,318 - -0.1 3,709,491 + Psest_3528 0.12 -1.8 3,709,491 + Psest_3528 0.12 -3.3 3,709,491 + Psest_3528 0.12 -0.8 3,709,492 - Psest_3528 0.13 +0.0 3,709,492 - Psest_3528 0.13 +1.2 3,709,492 - Psest_3528 0.13 -0.6 3,709,564 + Psest_3528 0.29 +0.7 3,709,567 - Psest_3528 0.30 -0.4 3,709,567 - Psest_3528 0.30 +0.9 3,709,693 + Psest_3528 0.58 -1.4 3,709,693 + Psest_3528 0.58 -0.4 3,709,693 + Psest_3528 0.58 +1.1 3,709,694 - Psest_3528 0.59 -2.2 3,709,694 - Psest_3528 0.59 -1.1 3,709,695 + Psest_3528 0.59 -1.1 3,709,695 + Psest_3528 0.59 +0.2 3,709,695 + Psest_3528 0.59 +1.0 3,709,695 + Psest_3528 0.59 +0.6 3,709,695 + Psest_3528 0.59 +0.2 3,709,695 + Psest_3528 0.59 +0.7 3,709,695 + Psest_3528 0.59 -0.6 3,709,695 + Psest_3528 0.59 -1.0 3,709,695 + Psest_3528 0.59 -2.0 3,709,695 + Psest_3528 0.59 -1.1 3,709,695 + Psest_3528 0.59 -1.8 3,709,695 + Psest_3528 0.59 -3.5 3,709,695 + Psest_3528 0.59 +1.1 3,709,695 + Psest_3528 0.59 +0.3 3,709,695 + Psest_3528 0.59 +1.4 3,709,695 + Psest_3528 0.59 +1.8 3,709,695 + Psest_3528 0.59 -2.5 3,709,695 + Psest_3528 0.59 -0.4 3,709,695 + Psest_3528 0.59 -0.8 3,709,695 + Psest_3528 0.59 -2.1 3,709,696 - Psest_3528 0.59 +1.5 3,709,696 - Psest_3528 0.59 +0.2 3,709,696 - Psest_3528 0.59 -0.5 3,709,696 - Psest_3528 0.59 -2.3 3,709,696 - Psest_3528 0.59 -3.1 3,709,696 - Psest_3528 0.59 +0.2 3,709,696 - Psest_3528 0.59 -0.5 3,709,696 - Psest_3528 0.59 -0.4 3,709,696 - Psest_3528 0.59 -0.4 3,709,696 - Psest_3528 0.59 -0.9 3,709,696 - Psest_3528 0.59 -1.6 3,709,696 - Psest_3528 0.59 -1.5 3,709,696 - Psest_3528 0.59 +1.7 3,709,696 - Psest_3528 0.59 -3.0 3,709,696 - Psest_3528 0.59 -3.9 3,709,696 - Psest_3528 0.59 -0.8 3,709,696 - Psest_3528 0.59 -1.1 3,709,696 - Psest_3528 0.59 -3.1 3,709,696 - Psest_3528 0.59 -1.6 3,709,696 - Psest_3528 0.59 +0.3 3,709,737 + Psest_3528 0.68 -0.1 3,709,737 + Psest_3528 0.68 +0.8 3,709,737 + Psest_3528 0.68 +1.2 3,709,738 - Psest_3528 0.68 -0.3 3,709,738 - Psest_3528 0.68 -0.8 3,709,744 - Psest_3528 0.70 +1.5 3,709,761 - Psest_3528 0.74 +0.2 3,709,761 - Psest_3528 0.74 +0.2 3,710,070 + Psest_3529 0.19 +0.9 3,710,070 + Psest_3529 0.19 +0.5 3,710,071 - Psest_3529 0.19 +0.6 3,710,071 - Psest_3529 0.19 -2.1 3,710,259 - Psest_3529 0.43 +0.8 3,710,406 + Psest_3529 0.62 -1.8 3,710,406 + Psest_3529 0.62 -2.8 3,710,407 - Psest_3529 0.62 +0.6 3,710,407 - Psest_3529 0.62 +1.8 3,710,407 - Psest_3529 0.62 +0.8 3,710,407 - Psest_3529 0.62 -2.6 3,710,527 + Psest_3529 0.78 +0.1 3,710,527 + Psest_3529 0.78 -2.6 3,710,527 + Psest_3529 0.78 -2.0 3,710,527 + Psest_3529 0.78 -2.0 3,710,527 + Psest_3529 0.78 -0.3 3,710,527 + Psest_3529 0.78 +1.4 3,710,538 + Psest_3529 0.79 -3.5 3,710,538 + Psest_3529 0.79 +0.9 3,710,538 + Psest_3529 0.79 -2.5 3,710,538 + Psest_3529 0.79 +1.0 3,710,538 + Psest_3529 0.79 -0.6 3,710,538 + Psest_3529 0.79 -1.5 3,710,538 + Psest_3529 0.79 +1.1 3,710,538 + Psest_3529 0.79 -0.9 3,710,538 + Psest_3529 0.79 -0.1 3,710,538 + Psest_3529 0.79 -2.1 3,710,538 + Psest_3529 0.79 -1.5 3,710,538 + Psest_3529 0.79 +1.4 3,710,539 - Psest_3529 0.79 -0.6 3,710,539 - Psest_3529 0.79 -0.4 3,710,539 - Psest_3529 0.79 -2.9 3,710,539 - Psest_3529 0.79 -1.5 3,710,539 - Psest_3529 0.79 -0.9 3,710,539 - Psest_3529 0.79 +1.9 3,710,539 - Psest_3529 0.79 +0.8 3,710,539 - Psest_3529 0.79 -0.5 3,710,539 - Psest_3529 0.79 +1.5 3,710,539 - Psest_3529 0.79 +0.2 3,710,539 - Psest_3529 0.79 +0.2 3,710,539 - Psest_3529 0.79 +0.9 3,710,539 - Psest_3529 0.79 +0.6 3,710,703 + -1.4
Or see this region's nucleotide sequence