Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3528

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3527 and Psest_3528 are separated by 164 nucleotidesPsest_3528 and Psest_3529 are separated by 49 nucleotidesPsest_3529 and Psest_3530 are separated by 2 nucleotides Psest_3527: Psest_3527 - Pseudouridylate synthases, 23S RNA-specific, at 3,708,387 to 3,709,271 _3527 Psest_3528: Psest_3528 - Predicted membrane protein, at 3,709,436 to 3,709,876 _3528 Psest_3529: Psest_3529 - Uncharacterized protein conserved in bacteria, at 3,709,926 to 3,710,699 _3529 Psest_3530: Psest_3530 - Copper binding periplasmic protein CusF., at 3,710,702 to 3,711,058 _3530 Position (kb) 3709 3710Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3708.488 kb on - strand, within Psest_3527at 3708.950 kb on - strand, within Psest_3527at 3708.950 kb on - strand, within Psest_3527at 3709.069 kb on + strand, within Psest_3527at 3709.069 kb on + strand, within Psest_3527at 3709.069 kb on + strand, within Psest_3527at 3709.069 kb on + strand, within Psest_3527at 3709.070 kb on - strand, within Psest_3527at 3709.070 kb on - strand, within Psest_3527at 3709.214 kb on + strandat 3709.282 kb on - strandat 3709.317 kb on + strandat 3709.317 kb on + strandat 3709.318 kb on - strandat 3709.318 kb on - strandat 3709.491 kb on + strand, within Psest_3528at 3709.491 kb on + strand, within Psest_3528at 3709.491 kb on + strand, within Psest_3528at 3709.492 kb on - strand, within Psest_3528at 3709.492 kb on - strand, within Psest_3528at 3709.492 kb on - strand, within Psest_3528at 3709.564 kb on + strand, within Psest_3528at 3709.567 kb on - strand, within Psest_3528at 3709.567 kb on - strand, within Psest_3528at 3709.693 kb on + strand, within Psest_3528at 3709.693 kb on + strand, within Psest_3528at 3709.693 kb on + strand, within Psest_3528at 3709.694 kb on - strand, within Psest_3528at 3709.694 kb on - strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.695 kb on + strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.696 kb on - strand, within Psest_3528at 3709.737 kb on + strand, within Psest_3528at 3709.737 kb on + strand, within Psest_3528at 3709.737 kb on + strand, within Psest_3528at 3709.738 kb on - strand, within Psest_3528at 3709.738 kb on - strand, within Psest_3528at 3709.744 kb on - strand, within Psest_3528at 3709.761 kb on - strand, within Psest_3528at 3709.761 kb on - strand, within Psest_3528at 3710.070 kb on + strand, within Psest_3529at 3710.070 kb on + strand, within Psest_3529at 3710.071 kb on - strand, within Psest_3529at 3710.071 kb on - strand, within Psest_3529at 3710.259 kb on - strand, within Psest_3529at 3710.406 kb on + strand, within Psest_3529at 3710.406 kb on + strand, within Psest_3529at 3710.407 kb on - strand, within Psest_3529at 3710.407 kb on - strand, within Psest_3529at 3710.407 kb on - strand, within Psest_3529at 3710.407 kb on - strand, within Psest_3529at 3710.527 kb on + strand, within Psest_3529at 3710.527 kb on + strand, within Psest_3529at 3710.527 kb on + strand, within Psest_3529at 3710.527 kb on + strand, within Psest_3529at 3710.527 kb on + strand, within Psest_3529at 3710.527 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.538 kb on + strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.539 kb on - strand, within Psest_3529at 3710.703 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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3,708,488 - Psest_3527 0.11 -1.0
3,708,950 - Psest_3527 0.64 -1.2
3,708,950 - Psest_3527 0.64 -0.9
3,709,069 + Psest_3527 0.77 -3.2
3,709,069 + Psest_3527 0.77 -0.2
3,709,069 + Psest_3527 0.77 -1.1
3,709,069 + Psest_3527 0.77 +2.5
3,709,070 - Psest_3527 0.77 -0.4
3,709,070 - Psest_3527 0.77 +0.2
3,709,214 + -1.3
3,709,282 - -1.1
3,709,317 + +1.4
3,709,317 + +2.0
3,709,318 - +0.5
3,709,318 - -0.1
3,709,491 + Psest_3528 0.12 -1.8
3,709,491 + Psest_3528 0.12 -3.3
3,709,491 + Psest_3528 0.12 -0.8
3,709,492 - Psest_3528 0.13 +0.0
3,709,492 - Psest_3528 0.13 +1.2
3,709,492 - Psest_3528 0.13 -0.6
3,709,564 + Psest_3528 0.29 +0.7
3,709,567 - Psest_3528 0.30 -0.4
3,709,567 - Psest_3528 0.30 +0.9
3,709,693 + Psest_3528 0.58 -1.4
3,709,693 + Psest_3528 0.58 -0.4
3,709,693 + Psest_3528 0.58 +1.1
3,709,694 - Psest_3528 0.59 -2.2
3,709,694 - Psest_3528 0.59 -1.1
3,709,695 + Psest_3528 0.59 -1.1
3,709,695 + Psest_3528 0.59 +0.2
3,709,695 + Psest_3528 0.59 +1.0
3,709,695 + Psest_3528 0.59 +0.6
3,709,695 + Psest_3528 0.59 +0.2
3,709,695 + Psest_3528 0.59 +0.7
3,709,695 + Psest_3528 0.59 -0.6
3,709,695 + Psest_3528 0.59 -1.0
3,709,695 + Psest_3528 0.59 -2.0
3,709,695 + Psest_3528 0.59 -1.1
3,709,695 + Psest_3528 0.59 -1.8
3,709,695 + Psest_3528 0.59 -3.5
3,709,695 + Psest_3528 0.59 +1.1
3,709,695 + Psest_3528 0.59 +0.3
3,709,695 + Psest_3528 0.59 +1.4
3,709,695 + Psest_3528 0.59 +1.8
3,709,695 + Psest_3528 0.59 -2.5
3,709,695 + Psest_3528 0.59 -0.4
3,709,695 + Psest_3528 0.59 -0.8
3,709,695 + Psest_3528 0.59 -2.1
3,709,696 - Psest_3528 0.59 +1.5
3,709,696 - Psest_3528 0.59 +0.2
3,709,696 - Psest_3528 0.59 -0.5
3,709,696 - Psest_3528 0.59 -2.3
3,709,696 - Psest_3528 0.59 -3.1
3,709,696 - Psest_3528 0.59 +0.2
3,709,696 - Psest_3528 0.59 -0.5
3,709,696 - Psest_3528 0.59 -0.4
3,709,696 - Psest_3528 0.59 -0.4
3,709,696 - Psest_3528 0.59 -0.9
3,709,696 - Psest_3528 0.59 -1.6
3,709,696 - Psest_3528 0.59 -1.5
3,709,696 - Psest_3528 0.59 +1.7
3,709,696 - Psest_3528 0.59 -3.0
3,709,696 - Psest_3528 0.59 -3.9
3,709,696 - Psest_3528 0.59 -0.8
3,709,696 - Psest_3528 0.59 -1.1
3,709,696 - Psest_3528 0.59 -3.1
3,709,696 - Psest_3528 0.59 -1.6
3,709,696 - Psest_3528 0.59 +0.3
3,709,737 + Psest_3528 0.68 -0.1
3,709,737 + Psest_3528 0.68 +0.8
3,709,737 + Psest_3528 0.68 +1.2
3,709,738 - Psest_3528 0.68 -0.3
3,709,738 - Psest_3528 0.68 -0.8
3,709,744 - Psest_3528 0.70 +1.5
3,709,761 - Psest_3528 0.74 +0.2
3,709,761 - Psest_3528 0.74 +0.2
3,710,070 + Psest_3529 0.19 +0.9
3,710,070 + Psest_3529 0.19 +0.5
3,710,071 - Psest_3529 0.19 +0.6
3,710,071 - Psest_3529 0.19 -2.1
3,710,259 - Psest_3529 0.43 +0.8
3,710,406 + Psest_3529 0.62 -1.8
3,710,406 + Psest_3529 0.62 -2.8
3,710,407 - Psest_3529 0.62 +0.6
3,710,407 - Psest_3529 0.62 +1.8
3,710,407 - Psest_3529 0.62 +0.8
3,710,407 - Psest_3529 0.62 -2.6
3,710,527 + Psest_3529 0.78 +0.1
3,710,527 + Psest_3529 0.78 -2.6
3,710,527 + Psest_3529 0.78 -2.0
3,710,527 + Psest_3529 0.78 -2.0
3,710,527 + Psest_3529 0.78 -0.3
3,710,527 + Psest_3529 0.78 +1.4
3,710,538 + Psest_3529 0.79 -3.5
3,710,538 + Psest_3529 0.79 +0.9
3,710,538 + Psest_3529 0.79 -2.5
3,710,538 + Psest_3529 0.79 +1.0
3,710,538 + Psest_3529 0.79 -0.6
3,710,538 + Psest_3529 0.79 -1.5
3,710,538 + Psest_3529 0.79 +1.1
3,710,538 + Psest_3529 0.79 -0.9
3,710,538 + Psest_3529 0.79 -0.1
3,710,538 + Psest_3529 0.79 -2.1
3,710,538 + Psest_3529 0.79 -1.5
3,710,538 + Psest_3529 0.79 +1.4
3,710,539 - Psest_3529 0.79 -0.6
3,710,539 - Psest_3529 0.79 -0.4
3,710,539 - Psest_3529 0.79 -2.9
3,710,539 - Psest_3529 0.79 -1.5
3,710,539 - Psest_3529 0.79 -0.9
3,710,539 - Psest_3529 0.79 +1.9
3,710,539 - Psest_3529 0.79 +0.8
3,710,539 - Psest_3529 0.79 -0.5
3,710,539 - Psest_3529 0.79 +1.5
3,710,539 - Psest_3529 0.79 +0.2
3,710,539 - Psest_3529 0.79 +0.2
3,710,539 - Psest_3529 0.79 +0.9
3,710,539 - Psest_3529 0.79 +0.6
3,710,703 + -1.4

Or see this region's nucleotide sequence