Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0341

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0338 and Psest_0339 are separated by 163 nucleotidesPsest_0339 and Psest_0340 are separated by 63 nucleotidesPsest_0340 and Psest_0341 are separated by 20 nucleotidesPsest_0341 and Psest_0342 are separated by 24 nucleotidesPsest_0342 and Psest_0343 overlap by 4 nucleotides Psest_0338: Psest_0338 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 359,798 to 362,008 _0338 Psest_0339: Psest_0339 - hypothetical protein, at 362,172 to 362,501 _0339 Psest_0340: Psest_0340 - hypothetical protein, at 362,565 to 362,747 _0340 Psest_0341: Psest_0341 - flavoprotein, HI0933 family, at 362,768 to 363,952 _0341 Psest_0342: Psest_0342 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 363,977 to 364,843 _0342 Psest_0343: Psest_0343 - hypothetical membrane protein, TIGR01666, at 364,840 to 367,038 _0343 Position (kb) 362 363 364Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 361.984 kb on - strandat 362.180 kb on + strandat 362.180 kb on + strandat 362.180 kb on + strandat 362.180 kb on + strandat 362.180 kb on + strandat 362.180 kb on + strandat 362.180 kb on + strandat 362.180 kb on + strandat 362.180 kb on + strandat 362.181 kb on - strandat 362.181 kb on - strandat 362.181 kb on - strandat 362.181 kb on - strandat 362.181 kb on - strandat 362.181 kb on - strandat 362.184 kb on + strandat 362.184 kb on + strandat 362.184 kb on + strandat 362.184 kb on + strandat 362.184 kb on + strandat 362.185 kb on - strandat 362.185 kb on - strandat 362.185 kb on - strandat 362.185 kb on - strandat 362.577 kb on + strandat 362.577 kb on + strandat 362.577 kb on + strandat 362.577 kb on + strandat 362.578 kb on - strandat 362.578 kb on - strandat 362.578 kb on - strandat 362.578 kb on - strandat 362.578 kb on - strandat 362.578 kb on - strandat 362.578 kb on - strandat 362.578 kb on - strandat 362.578 kb on - strandat 362.581 kb on + strandat 362.581 kb on + strandat 362.582 kb on - strandat 362.775 kb on + strandat 362.775 kb on + strandat 362.775 kb on + strandat 362.775 kb on + strandat 362.775 kb on + strandat 362.775 kb on + strandat 362.776 kb on - strandat 362.776 kb on - strandat 362.776 kb on - strandat 362.776 kb on - strandat 362.776 kb on - strandat 362.776 kb on - strandat 362.865 kb on + strandat 362.865 kb on + strandat 362.865 kb on + strandat 362.865 kb on + strandat 362.865 kb on + strandat 362.865 kb on + strandat 362.866 kb on - strandat 362.866 kb on - strandat 363.023 kb on + strand, within Psest_0341at 363.023 kb on + strand, within Psest_0341at 363.024 kb on - strand, within Psest_0341at 363.027 kb on + strand, within Psest_0341at 363.027 kb on + strand, within Psest_0341at 363.027 kb on + strand, within Psest_0341at 363.027 kb on + strand, within Psest_0341at 363.028 kb on - strand, within Psest_0341at 363.028 kb on - strand, within Psest_0341at 363.028 kb on - strand, within Psest_0341at 363.188 kb on - strand, within Psest_0341at 363.188 kb on - strand, within Psest_0341at 363.214 kb on - strand, within Psest_0341at 363.221 kb on + strand, within Psest_0341at 363.222 kb on - strand, within Psest_0341at 363.222 kb on - strand, within Psest_0341at 363.222 kb on - strand, within Psest_0341at 363.222 kb on - strand, within Psest_0341at 363.222 kb on - strand, within Psest_0341at 363.222 kb on - strand, within Psest_0341at 363.314 kb on + strand, within Psest_0341at 363.329 kb on + strand, within Psest_0341at 363.676 kb on - strand, within Psest_0341at 363.724 kb on - strand, within Psest_0341at 363.724 kb on - strand, within Psest_0341at 363.786 kb on + strand, within Psest_0341at 363.786 kb on + strand, within Psest_0341at 363.786 kb on + strand, within Psest_0341at 363.786 kb on + strand, within Psest_0341at 363.787 kb on - strand, within Psest_0341at 363.787 kb on - strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.788 kb on + strand, within Psest_0341at 363.789 kb on - strand, within Psest_0341at 363.789 kb on - strand, within Psest_0341at 363.789 kb on - strand, within Psest_0341at 363.789 kb on - strand, within Psest_0341at 363.789 kb on - strand, within Psest_0341at 363.789 kb on - strand, within Psest_0341at 363.789 kb on - strand, within Psest_0341at 363.789 kb on - strand, within Psest_0341at 363.789 kb on - strand, within Psest_0341at 363.789 kb on - strand, within Psest_0341at 363.957 kb on + strandat 363.957 kb on + strandat 363.957 kb on + strandat 363.957 kb on + strandat 363.957 kb on + strandat 363.958 kb on - strandat 363.958 kb on - strandat 363.982 kb on - strandat 363.982 kb on - strandat 363.982 kb on - strandat 364.122 kb on + strand, within Psest_0342at 364.122 kb on + strand, within Psest_0342at 364.123 kb on - strand, within Psest_0342at 364.162 kb on - strand, within Psest_0342at 364.162 kb on - strand, within Psest_0342at 364.192 kb on + strand, within Psest_0342at 364.192 kb on + strand, within Psest_0342at 364.192 kb on + strand, within Psest_0342at 364.193 kb on - strand, within Psest_0342at 364.193 kb on - strand, within Psest_0342at 364.193 kb on - strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.325 kb on + strand, within Psest_0342at 364.326 kb on - strand, within Psest_0342at 364.326 kb on - strand, within Psest_0342at 364.326 kb on - strand, within Psest_0342at 364.367 kb on + strand, within Psest_0342at 364.368 kb on - strand, within Psest_0342at 364.480 kb on + strand, within Psest_0342at 364.481 kb on - strand, within Psest_0342at 364.481 kb on - strand, within Psest_0342at 364.491 kb on - strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.497 kb on - strand, within Psest_0342at 364.497 kb on - strand, within Psest_0342at 364.497 kb on - strand, within Psest_0342at 364.497 kb on - strand, within Psest_0342at 364.497 kb on - strand, within Psest_0342at 364.539 kb on - strand, within Psest_0342at 364.539 kb on - strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.573 kb on - strand, within Psest_0342at 364.573 kb on - strand, within Psest_0342at 364.573 kb on - strand, within Psest_0342at 364.747 kb on + strand, within Psest_0342at 364.748 kb on - strand, within Psest_0342at 364.791 kb on - strandat 364.842 kb on - strandat 364.948 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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361,984 - -3.1
362,180 + +2.1
362,180 + -0.7
362,180 + -2.5
362,180 + +2.9
362,180 + +0.4
362,180 + +1.3
362,180 + -2.7
362,180 + -1.5
362,180 + +3.4
362,181 - +0.8
362,181 - +1.9
362,181 - +0.2
362,181 - +1.8
362,181 - +0.9
362,181 - -1.7
362,184 + -0.7
362,184 + +1.6
362,184 + +0.3
362,184 + -1.3
362,184 + -0.4
362,185 - +0.5
362,185 - +2.7
362,185 - -0.4
362,185 - -1.7
362,577 + +0.6
362,577 + -1.1
362,577 + -1.3
362,577 + +0.2
362,578 - +0.6
362,578 - -0.4
362,578 - -1.7
362,578 - -2.3
362,578 - -2.2
362,578 - -2.8
362,578 - -1.1
362,578 - +0.6
362,578 - -1.7
362,581 + -1.3
362,581 + -2.4
362,582 - -0.7
362,775 + +1.5
362,775 + -0.7
362,775 + -0.5
362,775 + -2.4
362,775 + -2.1
362,775 + -2.5
362,776 - -4.2
362,776 - -0.8
362,776 - -1.5
362,776 - +1.1
362,776 - +0.2
362,776 - +0.4
362,865 + +0.2
362,865 + -1.4
362,865 + -1.6
362,865 + +1.4
362,865 + -4.3
362,865 + -0.3
362,866 - -0.9
362,866 - -2.2
363,023 + Psest_0341 0.22 -1.3
363,023 + Psest_0341 0.22 -0.7
363,024 - Psest_0341 0.22 -2.3
363,027 + Psest_0341 0.22 +0.4
363,027 + Psest_0341 0.22 -1.1
363,027 + Psest_0341 0.22 -2.0
363,027 + Psest_0341 0.22 -1.8
363,028 - Psest_0341 0.22 +0.1
363,028 - Psest_0341 0.22 -0.1
363,028 - Psest_0341 0.22 -1.9
363,188 - Psest_0341 0.35 -0.9
363,188 - Psest_0341 0.35 -1.5
363,214 - Psest_0341 0.38 +0.3
363,221 + Psest_0341 0.38 +0.9
363,222 - Psest_0341 0.38 +2.3
363,222 - Psest_0341 0.38 +0.5
363,222 - Psest_0341 0.38 -3.5
363,222 - Psest_0341 0.38 -1.3
363,222 - Psest_0341 0.38 +0.0
363,222 - Psest_0341 0.38 -0.0
363,314 + Psest_0341 0.46 +0.8
363,329 + Psest_0341 0.47 -1.5
363,676 - Psest_0341 0.77 -1.5
363,724 - Psest_0341 0.81 -2.6
363,724 - Psest_0341 0.81 +0.1
363,786 + Psest_0341 0.86 -0.3
363,786 + Psest_0341 0.86 +1.1
363,786 + Psest_0341 0.86 -1.1
363,786 + Psest_0341 0.86 +0.4
363,787 - Psest_0341 0.86 +1.5
363,787 - Psest_0341 0.86 +1.6
363,788 + Psest_0341 0.86 -0.9
363,788 + Psest_0341 0.86 -0.6
363,788 + Psest_0341 0.86 +0.9
363,788 + Psest_0341 0.86 +0.5
363,788 + Psest_0341 0.86 +0.3
363,788 + Psest_0341 0.86 -0.8
363,788 + Psest_0341 0.86 -1.3
363,788 + Psest_0341 0.86 -1.6
363,788 + Psest_0341 0.86 -0.3
363,788 + Psest_0341 0.86 +0.9
363,788 + Psest_0341 0.86 +1.1
363,788 + Psest_0341 0.86 -2.7
363,788 + Psest_0341 0.86 -0.3
363,788 + Psest_0341 0.86 -1.3
363,788 + Psest_0341 0.86 +0.1
363,788 + Psest_0341 0.86 -0.2
363,788 + Psest_0341 0.86 +0.0
363,788 + Psest_0341 0.86 +0.0
363,788 + Psest_0341 0.86 -0.3
363,788 + Psest_0341 0.86 +0.3
363,788 + Psest_0341 0.86 +0.7
363,789 - Psest_0341 0.86 +0.7
363,789 - Psest_0341 0.86 -3.0
363,789 - Psest_0341 0.86 -3.3
363,789 - Psest_0341 0.86 -1.3
363,789 - Psest_0341 0.86 +0.4
363,789 - Psest_0341 0.86 -2.1
363,789 - Psest_0341 0.86 +0.4
363,789 - Psest_0341 0.86 -1.5
363,789 - Psest_0341 0.86 +2.3
363,789 - Psest_0341 0.86 -2.1
363,957 + +0.3
363,957 + -1.1
363,957 + -0.7
363,957 + +0.3
363,957 + +0.4
363,958 - +0.2
363,958 - -0.1
363,982 - -2.7
363,982 - +1.2
363,982 - -1.3
364,122 + Psest_0342 0.17 -0.7
364,122 + Psest_0342 0.17 -2.3
364,123 - Psest_0342 0.17 +0.4
364,162 - Psest_0342 0.21 +1.9
364,162 - Psest_0342 0.21 -1.3
364,192 + Psest_0342 0.25 +1.6
364,192 + Psest_0342 0.25 -0.8
364,192 + Psest_0342 0.25 -1.1
364,193 - Psest_0342 0.25 +0.2
364,193 - Psest_0342 0.25 -1.7
364,193 - Psest_0342 0.25 +0.6
364,274 + Psest_0342 0.34 -0.8
364,274 + Psest_0342 0.34 -2.2
364,274 + Psest_0342 0.34 +1.3
364,274 + Psest_0342 0.34 -1.3
364,274 + Psest_0342 0.34 +0.2
364,274 + Psest_0342 0.34 -0.9
364,274 + Psest_0342 0.34 -1.1
364,274 + Psest_0342 0.34 -0.5
364,275 - Psest_0342 0.34 +0.6
364,275 - Psest_0342 0.34 +0.9
364,275 - Psest_0342 0.34 +0.1
364,275 - Psest_0342 0.34 +0.5
364,275 - Psest_0342 0.34 -0.7
364,275 - Psest_0342 0.34 +1.8
364,275 - Psest_0342 0.34 +0.9
364,275 - Psest_0342 0.34 -0.5
364,275 - Psest_0342 0.34 +1.0
364,275 - Psest_0342 0.34 +0.2
364,278 + Psest_0342 0.35 -0.6
364,278 + Psest_0342 0.35 -2.0
364,278 + Psest_0342 0.35 -1.4
364,278 + Psest_0342 0.35 +1.3
364,278 + Psest_0342 0.35 +0.5
364,278 + Psest_0342 0.35 +0.3
364,278 + Psest_0342 0.35 -0.2
364,278 + Psest_0342 0.35 -2.2
364,278 + Psest_0342 0.35 -2.1
364,279 - Psest_0342 0.35 +2.2
364,279 - Psest_0342 0.35 -2.6
364,279 - Psest_0342 0.35 -1.1
364,279 - Psest_0342 0.35 +1.9
364,279 - Psest_0342 0.35 -0.7
364,279 - Psest_0342 0.35 +2.3
364,279 - Psest_0342 0.35 -3.0
364,279 - Psest_0342 0.35 -0.8
364,279 - Psest_0342 0.35 +2.0
364,279 - Psest_0342 0.35 +0.9
364,279 - Psest_0342 0.35 -0.1
364,279 - Psest_0342 0.35 -1.3
364,279 - Psest_0342 0.35 +1.0
364,279 - Psest_0342 0.35 -0.0
364,279 - Psest_0342 0.35 -3.6
364,279 - Psest_0342 0.35 -3.2
364,279 - Psest_0342 0.35 +1.8
364,325 + Psest_0342 0.40 -2.2
364,326 - Psest_0342 0.40 +2.7
364,326 - Psest_0342 0.40 -3.1
364,326 - Psest_0342 0.40 -3.0
364,367 + Psest_0342 0.45 +0.5
364,368 - Psest_0342 0.45 +2.0
364,480 + Psest_0342 0.58 -0.7
364,481 - Psest_0342 0.58 +2.2
364,481 - Psest_0342 0.58 -1.6
364,491 - Psest_0342 0.59 -1.2
364,496 + Psest_0342 0.60 +0.9
364,496 + Psest_0342 0.60 +0.8
364,496 + Psest_0342 0.60 -2.1
364,496 + Psest_0342 0.60 +0.8
364,496 + Psest_0342 0.60 -0.7
364,496 + Psest_0342 0.60 -3.1
364,497 - Psest_0342 0.60 -3.1
364,497 - Psest_0342 0.60 +0.3
364,497 - Psest_0342 0.60 -2.7
364,497 - Psest_0342 0.60 +0.4
364,497 - Psest_0342 0.60 +0.3
364,539 - Psest_0342 0.65 +2.1
364,539 - Psest_0342 0.65 -1.3
364,572 + Psest_0342 0.69 -1.7
364,572 + Psest_0342 0.69 +1.3
364,572 + Psest_0342 0.69 -2.2
364,572 + Psest_0342 0.69 -3.6
364,572 + Psest_0342 0.69 -0.5
364,572 + Psest_0342 0.69 -0.7
364,572 + Psest_0342 0.69 -2.3
364,572 + Psest_0342 0.69 -0.1
364,573 - Psest_0342 0.69 +0.6
364,573 - Psest_0342 0.69 +1.0
364,573 - Psest_0342 0.69 -2.9
364,747 + Psest_0342 0.89 -2.6
364,748 - Psest_0342 0.89 -0.1
364,791 - +0.9
364,842 - -2.6
364,948 + -2.4

Or see this region's nucleotide sequence