Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3282

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3280 and Psest_3281 are separated by 14 nucleotidesPsest_3281 and Psest_3282 are separated by 427 nucleotidesPsest_3282 and Psest_3283 are separated by 69 nucleotidesPsest_3283 and Psest_3284 are separated by 33 nucleotidesPsest_3284 and Psest_3285 overlap by 4 nucleotides Psest_3280: Psest_3280 - Ribosomal protein S9, at 3,447,700 to 3,448,092 _3280 Psest_3281: Psest_3281 - ribosomal protein L13, bacterial type, at 3,448,107 to 3,448,535 _3281 Psest_3282: Psest_3282 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 3,448,963 to 3,450,000 _3282 Psest_3283: Psest_3283 - Predicted membrane protein, at 3,450,070 to 3,450,747 _3283 Psest_3284: Psest_3284 - Uncharacterized protein conserved in bacteria, at 3,450,781 to 3,450,975 _3284 Psest_3285: Psest_3285 - dephospho-CoA kinase, at 3,450,972 to 3,451,580 _3285 Position (kb) 3448 3449 3450 3451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3448.691 kb on - strandat 3448.764 kb on - strandat 3448.814 kb on - strandat 3448.924 kb on - strandat 3448.979 kb on + strandat 3449.094 kb on - strand, within Psest_3282at 3449.094 kb on - strand, within Psest_3282at 3449.102 kb on + strand, within Psest_3282at 3449.102 kb on + strand, within Psest_3282at 3449.102 kb on + strand, within Psest_3282at 3449.102 kb on + strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.103 kb on - strand, within Psest_3282at 3449.106 kb on + strand, within Psest_3282at 3449.107 kb on - strand, within Psest_3282at 3449.146 kb on + strand, within Psest_3282at 3449.146 kb on + strand, within Psest_3282at 3449.146 kb on + strand, within Psest_3282at 3449.146 kb on + strand, within Psest_3282at 3449.146 kb on + strand, within Psest_3282at 3449.147 kb on - strand, within Psest_3282at 3449.147 kb on - strand, within Psest_3282at 3449.164 kb on + strand, within Psest_3282at 3449.164 kb on + strand, within Psest_3282at 3449.164 kb on + strand, within Psest_3282at 3449.164 kb on + strand, within Psest_3282at 3449.164 kb on + strand, within Psest_3282at 3449.164 kb on + strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.165 kb on - strand, within Psest_3282at 3449.166 kb on + strand, within Psest_3282at 3449.167 kb on - strand, within Psest_3282at 3449.167 kb on - strand, within Psest_3282at 3449.167 kb on - strand, within Psest_3282at 3449.177 kb on - strand, within Psest_3282at 3449.177 kb on - strand, within Psest_3282at 3449.177 kb on - strand, within Psest_3282at 3449.177 kb on - strand, within Psest_3282at 3449.244 kb on + strand, within Psest_3282at 3449.244 kb on + strand, within Psest_3282at 3449.244 kb on + strand, within Psest_3282at 3449.244 kb on + strand, within Psest_3282at 3449.244 kb on + strand, within Psest_3282at 3449.245 kb on - strand, within Psest_3282at 3449.245 kb on - strand, within Psest_3282at 3449.245 kb on - strand, within Psest_3282at 3449.247 kb on - strand, within Psest_3282at 3449.247 kb on - strand, within Psest_3282at 3449.247 kb on - strand, within Psest_3282at 3449.247 kb on - strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.289 kb on + strand, within Psest_3282at 3449.290 kb on - strand, within Psest_3282at 3449.290 kb on - strand, within Psest_3282at 3449.290 kb on - strand, within Psest_3282at 3449.290 kb on - strand, within Psest_3282at 3449.290 kb on - strand, within Psest_3282at 3449.290 kb on - strand, within Psest_3282at 3449.290 kb on - strand, within Psest_3282at 3449.290 kb on - strand, within Psest_3282at 3449.290 kb on - strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.291 kb on + strand, within Psest_3282at 3449.292 kb on - strand, within Psest_3282at 3449.292 kb on - strand, within Psest_3282at 3449.292 kb on - strand, within Psest_3282at 3449.347 kb on + strand, within Psest_3282at 3449.348 kb on - strand, within Psest_3282at 3449.464 kb on - strand, within Psest_3282at 3449.464 kb on - strand, within Psest_3282at 3449.524 kb on + strand, within Psest_3282at 3449.524 kb on + strand, within Psest_3282at 3449.524 kb on + strand, within Psest_3282at 3449.525 kb on - strand, within Psest_3282at 3449.525 kb on - strand, within Psest_3282at 3449.525 kb on - strand, within Psest_3282at 3449.535 kb on - strand, within Psest_3282at 3449.591 kb on + strand, within Psest_3282at 3449.591 kb on + strand, within Psest_3282at 3449.592 kb on - strand, within Psest_3282at 3449.592 kb on - strand, within Psest_3282at 3449.693 kb on - strand, within Psest_3282at 3449.693 kb on - strand, within Psest_3282at 3449.693 kb on - strand, within Psest_3282at 3449.693 kb on - strand, within Psest_3282at 3449.752 kb on + strand, within Psest_3282at 3449.755 kb on - strand, within Psest_3282at 3449.789 kb on - strand, within Psest_3282at 3449.789 kb on - strand, within Psest_3282at 3449.791 kb on - strand, within Psest_3282at 3449.791 kb on - strand, within Psest_3282at 3449.791 kb on - strand, within Psest_3282at 3449.792 kb on + strand, within Psest_3282at 3449.792 kb on + strand, within Psest_3282at 3449.792 kb on + strand, within Psest_3282at 3449.792 kb on + strand, within Psest_3282at 3449.792 kb on + strand, within Psest_3282at 3449.792 kb on + strand, within Psest_3282at 3449.793 kb on - strand, within Psest_3282at 3449.793 kb on - strand, within Psest_3282at 3449.793 kb on - strand, within Psest_3282at 3449.793 kb on - strand, within Psest_3282at 3449.793 kb on - strand, within Psest_3282at 3449.793 kb on - strand, within Psest_3282at 3449.793 kb on - strand, within Psest_3282at 3449.793 kb on - strand, within Psest_3282at 3449.842 kb on + strand, within Psest_3282at 3449.842 kb on + strand, within Psest_3282at 3449.843 kb on - strand, within Psest_3282at 3449.843 kb on - strand, within Psest_3282at 3449.843 kb on - strand, within Psest_3282at 3449.919 kb on + strandat 3449.919 kb on + strandat 3449.920 kb on - strandat 3449.930 kb on + strandat 3449.960 kb on + strandat 3449.960 kb on + strandat 3450.066 kb on - strandat 3450.110 kb on + strandat 3450.110 kb on + strandat 3450.125 kb on - strandat 3450.125 kb on - strandat 3450.125 kb on - strandat 3450.173 kb on + strand, within Psest_3283at 3450.280 kb on - strand, within Psest_3283at 3450.281 kb on + strand, within Psest_3283at 3450.281 kb on + strand, within Psest_3283at 3450.281 kb on + strand, within Psest_3283at 3450.281 kb on + strand, within Psest_3283at 3450.281 kb on + strand, within Psest_3283at 3450.282 kb on - strand, within Psest_3283at 3450.282 kb on - strand, within Psest_3283at 3450.282 kb on - strand, within Psest_3283at 3450.297 kb on + strand, within Psest_3283at 3450.297 kb on + strand, within Psest_3283at 3450.298 kb on - strand, within Psest_3283at 3450.298 kb on - strand, within Psest_3283at 3450.298 kb on - strand, within Psest_3283at 3450.396 kb on - strand, within Psest_3283at 3450.479 kb on + strand, within Psest_3283at 3450.479 kb on + strand, within Psest_3283at 3450.480 kb on - strand, within Psest_3283at 3450.491 kb on + strand, within Psest_3283at 3450.491 kb on + strand, within Psest_3283at 3450.492 kb on - strand, within Psest_3283at 3450.558 kb on - strand, within Psest_3283at 3450.563 kb on + strand, within Psest_3283at 3450.564 kb on - strand, within Psest_3283at 3450.614 kb on - strand, within Psest_3283at 3450.615 kb on + strand, within Psest_3283at 3450.615 kb on + strand, within Psest_3283at 3450.615 kb on + strand, within Psest_3283at 3450.615 kb on + strand, within Psest_3283at 3450.615 kb on + strand, within Psest_3283at 3450.616 kb on - strand, within Psest_3283at 3450.616 kb on - strand, within Psest_3283at 3450.616 kb on - strand, within Psest_3283at 3450.616 kb on - strand, within Psest_3283at 3450.626 kb on + strand, within Psest_3283at 3450.627 kb on - strand, within Psest_3283at 3450.645 kb on + strand, within Psest_3283at 3450.645 kb on + strand, within Psest_3283at 3450.935 kb on - strand, within Psest_3284

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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3,448,691 - -1.0
3,448,764 - -0.2
3,448,814 - +0.1
3,448,924 - -4.1
3,448,979 + -0.1
3,449,094 - Psest_3282 0.13 +0.2
3,449,094 - Psest_3282 0.13 -1.3
3,449,102 + Psest_3282 0.13 +1.3
3,449,102 + Psest_3282 0.13 +0.5
3,449,102 + Psest_3282 0.13 -1.8
3,449,102 + Psest_3282 0.13 -0.0
3,449,103 - Psest_3282 0.13 -1.4
3,449,103 - Psest_3282 0.13 -1.8
3,449,103 - Psest_3282 0.13 +0.2
3,449,103 - Psest_3282 0.13 +0.5
3,449,103 - Psest_3282 0.13 +4.5
3,449,103 - Psest_3282 0.13 -1.4
3,449,103 - Psest_3282 0.13 -1.1
3,449,103 - Psest_3282 0.13 +1.9
3,449,103 - Psest_3282 0.13 -1.7
3,449,103 - Psest_3282 0.13 +0.7
3,449,103 - Psest_3282 0.13 +2.3
3,449,106 + Psest_3282 0.14 -1.6
3,449,107 - Psest_3282 0.14 -1.1
3,449,146 + Psest_3282 0.18 -1.2
3,449,146 + Psest_3282 0.18 -3.1
3,449,146 + Psest_3282 0.18 +0.3
3,449,146 + Psest_3282 0.18 +1.7
3,449,146 + Psest_3282 0.18 +1.4
3,449,147 - Psest_3282 0.18 +2.1
3,449,147 - Psest_3282 0.18 +0.2
3,449,164 + Psest_3282 0.19 -0.1
3,449,164 + Psest_3282 0.19 +1.2
3,449,164 + Psest_3282 0.19 -3.6
3,449,164 + Psest_3282 0.19 -0.3
3,449,164 + Psest_3282 0.19 -1.9
3,449,164 + Psest_3282 0.19 -1.8
3,449,165 - Psest_3282 0.19 -0.8
3,449,165 - Psest_3282 0.19 -0.6
3,449,165 - Psest_3282 0.19 -1.6
3,449,165 - Psest_3282 0.19 -0.4
3,449,165 - Psest_3282 0.19 +2.3
3,449,165 - Psest_3282 0.19 +1.3
3,449,165 - Psest_3282 0.19 -2.9
3,449,165 - Psest_3282 0.19 +0.9
3,449,165 - Psest_3282 0.19 -2.1
3,449,165 - Psest_3282 0.19 -1.1
3,449,165 - Psest_3282 0.19 +0.2
3,449,166 + Psest_3282 0.20 +1.1
3,449,167 - Psest_3282 0.20 +0.2
3,449,167 - Psest_3282 0.20 +0.8
3,449,167 - Psest_3282 0.20 -0.4
3,449,177 - Psest_3282 0.21 -3.2
3,449,177 - Psest_3282 0.21 -2.3
3,449,177 - Psest_3282 0.21 +1.8
3,449,177 - Psest_3282 0.21 +1.9
3,449,244 + Psest_3282 0.27 -1.9
3,449,244 + Psest_3282 0.27 +1.2
3,449,244 + Psest_3282 0.27 -2.4
3,449,244 + Psest_3282 0.27 -0.2
3,449,244 + Psest_3282 0.27 +0.1
3,449,245 - Psest_3282 0.27 -1.1
3,449,245 - Psest_3282 0.27 -3.1
3,449,245 - Psest_3282 0.27 +0.3
3,449,247 - Psest_3282 0.27 +0.2
3,449,247 - Psest_3282 0.27 +3.7
3,449,247 - Psest_3282 0.27 +0.4
3,449,247 - Psest_3282 0.27 -2.1
3,449,289 + Psest_3282 0.31 +0.9
3,449,289 + Psest_3282 0.31 -1.4
3,449,289 + Psest_3282 0.31 +2.0
3,449,289 + Psest_3282 0.31 +0.2
3,449,289 + Psest_3282 0.31 -1.4
3,449,289 + Psest_3282 0.31 -0.4
3,449,289 + Psest_3282 0.31 +0.2
3,449,289 + Psest_3282 0.31 +2.4
3,449,289 + Psest_3282 0.31 +0.7
3,449,289 + Psest_3282 0.31 +0.0
3,449,289 + Psest_3282 0.31 -0.4
3,449,290 - Psest_3282 0.32 +1.0
3,449,290 - Psest_3282 0.32 +3.2
3,449,290 - Psest_3282 0.32 +0.2
3,449,290 - Psest_3282 0.32 -2.5
3,449,290 - Psest_3282 0.32 +1.4
3,449,290 - Psest_3282 0.32 +0.8
3,449,290 - Psest_3282 0.32 +1.3
3,449,290 - Psest_3282 0.32 +1.1
3,449,290 - Psest_3282 0.32 -0.6
3,449,291 + Psest_3282 0.32 -3.3
3,449,291 + Psest_3282 0.32 +1.5
3,449,291 + Psest_3282 0.32 +1.3
3,449,291 + Psest_3282 0.32 +1.8
3,449,291 + Psest_3282 0.32 +1.0
3,449,291 + Psest_3282 0.32 -3.3
3,449,291 + Psest_3282 0.32 +0.6
3,449,291 + Psest_3282 0.32 -2.6
3,449,291 + Psest_3282 0.32 -3.5
3,449,291 + Psest_3282 0.32 -1.5
3,449,291 + Psest_3282 0.32 +1.6
3,449,291 + Psest_3282 0.32 -0.1
3,449,291 + Psest_3282 0.32 +0.9
3,449,291 + Psest_3282 0.32 -0.8
3,449,292 - Psest_3282 0.32 -0.4
3,449,292 - Psest_3282 0.32 +0.9
3,449,292 - Psest_3282 0.32 +0.0
3,449,347 + Psest_3282 0.37 -1.1
3,449,348 - Psest_3282 0.37 +0.6
3,449,464 - Psest_3282 0.48 +2.0
3,449,464 - Psest_3282 0.48 +0.9
3,449,524 + Psest_3282 0.54 +0.2
3,449,524 + Psest_3282 0.54 -2.5
3,449,524 + Psest_3282 0.54 -3.1
3,449,525 - Psest_3282 0.54 +1.1
3,449,525 - Psest_3282 0.54 -0.2
3,449,525 - Psest_3282 0.54 +1.3
3,449,535 - Psest_3282 0.55 -2.0
3,449,591 + Psest_3282 0.61 +1.6
3,449,591 + Psest_3282 0.61 +0.5
3,449,592 - Psest_3282 0.61 -1.0
3,449,592 - Psest_3282 0.61 +3.0
3,449,693 - Psest_3282 0.70 -0.7
3,449,693 - Psest_3282 0.70 -1.1
3,449,693 - Psest_3282 0.70 +0.6
3,449,693 - Psest_3282 0.70 +2.8
3,449,752 + Psest_3282 0.76 -3.3
3,449,755 - Psest_3282 0.76 +1.5
3,449,789 - Psest_3282 0.80 +1.0
3,449,789 - Psest_3282 0.80 +0.9
3,449,791 - Psest_3282 0.80 +0.9
3,449,791 - Psest_3282 0.80 -2.1
3,449,791 - Psest_3282 0.80 +0.3
3,449,792 + Psest_3282 0.80 +2.3
3,449,792 + Psest_3282 0.80 -1.1
3,449,792 + Psest_3282 0.80 +0.4
3,449,792 + Psest_3282 0.80 -2.4
3,449,792 + Psest_3282 0.80 +0.3
3,449,792 + Psest_3282 0.80 +0.6
3,449,793 - Psest_3282 0.80 -1.1
3,449,793 - Psest_3282 0.80 -2.3
3,449,793 - Psest_3282 0.80 +0.0
3,449,793 - Psest_3282 0.80 +0.5
3,449,793 - Psest_3282 0.80 -0.9
3,449,793 - Psest_3282 0.80 -3.6
3,449,793 - Psest_3282 0.80 +1.6
3,449,793 - Psest_3282 0.80 -1.6
3,449,842 + Psest_3282 0.85 -0.9
3,449,842 + Psest_3282 0.85 +0.8
3,449,843 - Psest_3282 0.85 +1.9
3,449,843 - Psest_3282 0.85 +0.4
3,449,843 - Psest_3282 0.85 -1.4
3,449,919 + +1.7
3,449,919 + +0.3
3,449,920 - -2.5
3,449,930 + +1.9
3,449,960 + -0.4
3,449,960 + -1.6
3,450,066 - -2.8
3,450,110 + +1.3
3,450,110 + +0.4
3,450,125 - -1.6
3,450,125 - +0.6
3,450,125 - -0.4
3,450,173 + Psest_3283 0.15 -1.3
3,450,280 - Psest_3283 0.31 -1.0
3,450,281 + Psest_3283 0.31 +0.8
3,450,281 + Psest_3283 0.31 -2.5
3,450,281 + Psest_3283 0.31 -1.6
3,450,281 + Psest_3283 0.31 +0.6
3,450,281 + Psest_3283 0.31 -0.4
3,450,282 - Psest_3283 0.31 -0.4
3,450,282 - Psest_3283 0.31 -0.0
3,450,282 - Psest_3283 0.31 -0.0
3,450,297 + Psest_3283 0.33 -0.8
3,450,297 + Psest_3283 0.33 -4.3
3,450,298 - Psest_3283 0.34 +1.4
3,450,298 - Psest_3283 0.34 -0.0
3,450,298 - Psest_3283 0.34 -1.8
3,450,396 - Psest_3283 0.48 -0.3
3,450,479 + Psest_3283 0.60 +5.7
3,450,479 + Psest_3283 0.60 +0.5
3,450,480 - Psest_3283 0.60 +1.1
3,450,491 + Psest_3283 0.62 +0.1
3,450,491 + Psest_3283 0.62 +1.6
3,450,492 - Psest_3283 0.62 +0.7
3,450,558 - Psest_3283 0.72 -0.7
3,450,563 + Psest_3283 0.73 +2.5
3,450,564 - Psest_3283 0.73 -0.6
3,450,614 - Psest_3283 0.80 -2.4
3,450,615 + Psest_3283 0.80 +0.3
3,450,615 + Psest_3283 0.80 +0.7
3,450,615 + Psest_3283 0.80 +1.5
3,450,615 + Psest_3283 0.80 +0.5
3,450,615 + Psest_3283 0.80 -2.2
3,450,616 - Psest_3283 0.81 +0.1
3,450,616 - Psest_3283 0.81 -1.1
3,450,616 - Psest_3283 0.81 -0.5
3,450,616 - Psest_3283 0.81 -0.7
3,450,626 + Psest_3283 0.82 +0.4
3,450,627 - Psest_3283 0.82 +0.6
3,450,645 + Psest_3283 0.85 +1.0
3,450,645 + Psest_3283 0.85 -4.1
3,450,935 - Psest_3284 0.79 +2.0

Or see this region's nucleotide sequence