Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3150 and Psest_3151 are separated by 319 nucleotides Psest_3151 and Psest_3153 are separated by 278 nucleotides Psest_3153 and Psest_3154 overlap by 10 nucleotides
Psest_3150: Psest_3150 - hypothetical protein, at 3,320,339 to 3,321,598
_3150
Psest_3151: Psest_3151 - hypothetical protein, at 3,321,918 to 3,322,388
_3151
Psest_3153: Psest_3153 - hypothetical protein, at 3,322,667 to 3,322,885
_3153
Psest_3154: Psest_3154 - hypothetical protein, at 3,322,876 to 3,324,540
_3154
Position (kb)
3321
3322
3323 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3320.925 kb on + strand, within Psest_3150 at 3320.981 kb on - strand, within Psest_3150 at 3321.037 kb on + strand, within Psest_3150 at 3321.080 kb on - strand, within Psest_3150 at 3321.194 kb on - strand, within Psest_3150 at 3321.242 kb on + strand, within Psest_3150 at 3321.363 kb on + strand, within Psest_3150 at 3321.364 kb on - strand, within Psest_3150 at 3321.391 kb on + strand, within Psest_3150 at 3321.514 kb on + strand at 3321.514 kb on + strand at 3321.514 kb on + strand at 3321.597 kb on - strand at 3321.649 kb on - strand at 3321.675 kb on - strand at 3321.675 kb on - strand at 3321.698 kb on - strand at 3321.932 kb on - strand at 3322.140 kb on + strand, within Psest_3151 at 3322.141 kb on - strand, within Psest_3151 at 3322.143 kb on - strand, within Psest_3151 at 3322.181 kb on + strand, within Psest_3151 at 3322.269 kb on + strand, within Psest_3151 at 3322.386 kb on + strand at 3323.145 kb on - strand, within Psest_3154 at 3323.206 kb on - strand, within Psest_3154 at 3323.239 kb on + strand, within Psest_3154 at 3323.375 kb on + strand, within Psest_3154 at 3323.375 kb on + strand, within Psest_3154 at 3323.375 kb on + strand, within Psest_3154 at 3323.376 kb on - strand, within Psest_3154 at 3323.376 kb on - strand, within Psest_3154 at 3323.376 kb on - strand, within Psest_3154 at 3323.376 kb on - strand, within Psest_3154
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 3,320,925 + Psest_3150 0.47 +0.5 3,320,981 - Psest_3150 0.51 -2.3 3,321,037 + Psest_3150 0.55 +1.5 3,321,080 - Psest_3150 0.59 +0.1 3,321,194 - Psest_3150 0.68 +0.7 3,321,242 + Psest_3150 0.72 +2.3 3,321,363 + Psest_3150 0.81 -0.1 3,321,364 - Psest_3150 0.81 +0.0 3,321,391 + Psest_3150 0.83 +4.1 3,321,514 + +1.7 3,321,514 + +2.0 3,321,514 + -0.2 3,321,597 - +1.1 3,321,649 - +1.0 3,321,675 - -1.2 3,321,675 - -1.2 3,321,698 - -3.0 3,321,932 - +1.0 3,322,140 + Psest_3151 0.47 +0.2 3,322,141 - Psest_3151 0.47 -0.9 3,322,143 - Psest_3151 0.48 -3.7 3,322,181 + Psest_3151 0.56 -0.5 3,322,269 + Psest_3151 0.75 -2.0 3,322,386 + -1.7 3,323,145 - Psest_3154 0.16 -1.3 3,323,206 - Psest_3154 0.20 -3.7 3,323,239 + Psest_3154 0.22 -3.2 3,323,375 + Psest_3154 0.30 -0.6 3,323,375 + Psest_3154 0.30 +0.9 3,323,375 + Psest_3154 0.30 +2.7 3,323,376 - Psest_3154 0.30 +1.3 3,323,376 - Psest_3154 0.30 +1.0 3,323,376 - Psest_3154 0.30 -3.0 3,323,376 - Psest_3154 0.30 +0.9
Or see this region's nucleotide sequence