Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2840

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2838 and Psest_2839 are separated by 133 nucleotidesPsest_2839 and Psest_2840 overlap by 4 nucleotidesPsest_2840 and Psest_2841 are separated by 196 nucleotides Psest_2838: Psest_2838 - undecaprenyl diphosphate synthase, at 3,029,826 to 3,030,587 _2838 Psest_2839: Psest_2839 - ribosome recycling factor, at 3,030,721 to 3,031,278 _2839 Psest_2840: Psest_2840 - uridylate kinase, at 3,031,275 to 3,032,018 _2840 Psest_2841: Psest_2841 - translation elongation factor Ts, at 3,032,215 to 3,033,078 _2841 Position (kb) 3031 3032 3033Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3030.598 kb on - strandat 3030.598 kb on - strandat 3030.598 kb on - strandat 3030.598 kb on - strandat 3032.028 kb on - strandat 3032.028 kb on - strandat 3032.028 kb on - strandat 3032.124 kb on - strandat 3032.124 kb on - strandat 3032.126 kb on - strandat 3032.217 kb on - strandat 3032.217 kb on - strandat 3032.217 kb on - strandat 3032.217 kb on - strandat 3032.217 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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3,030,598 - -0.8
3,030,598 - +0.6
3,030,598 - +0.2
3,030,598 - -4.1
3,032,028 - +2.0
3,032,028 - +1.8
3,032,028 - +0.9
3,032,124 - +1.4
3,032,124 - +1.4
3,032,126 - +0.2
3,032,217 - -0.6
3,032,217 - +0.5
3,032,217 - -0.1
3,032,217 - +0.5
3,032,217 - +0.5

Or see this region's nucleotide sequence