Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2696

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2695 and Psest_2696 are separated by 109 nucleotidesPsest_2696 and Psest_2697 are separated by 71 nucleotides Psest_2695: Psest_2695 - Sugar phosphate permease, at 2,884,109 to 2,885,452 _2695 Psest_2696: Psest_2696 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,885,562 to 2,886,341 _2696 Psest_2697: Psest_2697 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 2,886,413 to 2,887,423 _2697 Position (kb) 2885 2886 2887Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2884.872 kb on + strand, within Psest_2695at 2884.873 kb on - strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.957 kb on + strand, within Psest_2695at 2884.957 kb on + strand, within Psest_2695at 2884.957 kb on + strand, within Psest_2695at 2884.957 kb on + strand, within Psest_2695at 2884.958 kb on - strand, within Psest_2695at 2884.958 kb on - strand, within Psest_2695at 2884.958 kb on - strand, within Psest_2695at 2884.958 kb on - strand, within Psest_2695at 2884.961 kb on + strand, within Psest_2695at 2884.962 kb on - strand, within Psest_2695at 2884.962 kb on - strand, within Psest_2695at 2884.962 kb on - strand, within Psest_2695at 2885.016 kb on - strand, within Psest_2695at 2885.334 kb on + strandat 2885.436 kb on - strandat 2885.436 kb on - strandat 2885.436 kb on - strandat 2885.436 kb on - strandat 2885.442 kb on - strandat 2885.442 kb on - strandat 2885.465 kb on + strandat 2885.466 kb on - strandat 2885.477 kb on + strandat 2885.478 kb on - strandat 2885.607 kb on - strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2886.401 kb on - strandat 2886.439 kb on - strandat 2886.441 kb on + strandat 2886.442 kb on - strandat 2886.442 kb on - strandat 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.519 kb on + strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.520 kb on - strand, within Psest_2697at 2886.573 kb on + strand, within Psest_2697at 2886.573 kb on + strand, within Psest_2697at 2886.573 kb on + strand, within Psest_2697at 2886.573 kb on + strand, within Psest_2697at 2886.573 kb on + strand, within Psest_2697at 2886.574 kb on - strand, within Psest_2697at 2886.621 kb on + strand, within Psest_2697at 2886.621 kb on + strand, within Psest_2697at 2886.621 kb on + strand, within Psest_2697at 2886.622 kb on - strand, within Psest_2697at 2886.699 kb on + strand, within Psest_2697at 2886.699 kb on + strand, within Psest_2697at 2886.699 kb on + strand, within Psest_2697at 2886.700 kb on - strand, within Psest_2697at 2886.700 kb on - strand, within Psest_2697at 2886.700 kb on - strand, within Psest_2697at 2886.820 kb on - strand, within Psest_2697at 2886.820 kb on - strand, within Psest_2697at 2886.820 kb on - strand, within Psest_2697at 2886.820 kb on - strand, within Psest_2697at 2886.820 kb on - strand, within Psest_2697at 2886.961 kb on - strand, within Psest_2697at 2887.002 kb on + strand, within Psest_2697at 2887.002 kb on + strand, within Psest_2697at 2887.002 kb on + strand, within Psest_2697at 2887.003 kb on - strand, within Psest_2697at 2887.104 kb on + strand, within Psest_2697at 2887.104 kb on + strand, within Psest_2697at 2887.105 kb on - strand, within Psest_2697at 2887.236 kb on + strand, within Psest_2697at 2887.236 kb on + strand, within Psest_2697at 2887.237 kb on - strand, within Psest_2697at 2887.237 kb on - strand, within Psest_2697at 2887.237 kb on - strand, within Psest_2697at 2887.237 kb on - strand, within Psest_2697at 2887.237 kb on - strand, within Psest_2697at 2887.279 kb on + strand, within Psest_2697at 2887.279 kb on + strand, within Psest_2697at 2887.279 kb on + strand, within Psest_2697at 2887.335 kb on + strandat 2887.335 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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2,884,872 + Psest_2695 0.57 +1.2
2,884,873 - Psest_2695 0.57 -0.1
2,884,953 + Psest_2695 0.63 -0.2
2,884,953 + Psest_2695 0.63 -0.7
2,884,953 + Psest_2695 0.63 -1.4
2,884,953 + Psest_2695 0.63 +0.4
2,884,953 + Psest_2695 0.63 -1.8
2,884,953 + Psest_2695 0.63 +0.7
2,884,953 + Psest_2695 0.63 +0.2
2,884,953 + Psest_2695 0.63 -0.0
2,884,953 + Psest_2695 0.63 -0.1
2,884,953 + Psest_2695 0.63 +1.2
2,884,953 + Psest_2695 0.63 +0.6
2,884,953 + Psest_2695 0.63 +0.1
2,884,953 + Psest_2695 0.63 -3.9
2,884,954 - Psest_2695 0.63 +0.3
2,884,954 - Psest_2695 0.63 -3.0
2,884,954 - Psest_2695 0.63 -0.7
2,884,954 - Psest_2695 0.63 -3.0
2,884,954 - Psest_2695 0.63 +0.6
2,884,954 - Psest_2695 0.63 -2.0
2,884,954 - Psest_2695 0.63 +0.2
2,884,954 - Psest_2695 0.63 -1.7
2,884,954 - Psest_2695 0.63 +1.8
2,884,954 - Psest_2695 0.63 +0.6
2,884,954 - Psest_2695 0.63 -0.5
2,884,954 - Psest_2695 0.63 -3.0
2,884,954 - Psest_2695 0.63 +0.2
2,884,954 - Psest_2695 0.63 -2.2
2,884,954 - Psest_2695 0.63 +0.7
2,884,954 - Psest_2695 0.63 +0.6
2,884,957 + Psest_2695 0.63 -0.8
2,884,957 + Psest_2695 0.63 -0.9
2,884,957 + Psest_2695 0.63 -0.3
2,884,957 + Psest_2695 0.63 +0.4
2,884,958 - Psest_2695 0.63 -2.6
2,884,958 - Psest_2695 0.63 +0.6
2,884,958 - Psest_2695 0.63 -3.5
2,884,958 - Psest_2695 0.63 +0.2
2,884,961 + Psest_2695 0.63 -1.4
2,884,962 - Psest_2695 0.63 +0.6
2,884,962 - Psest_2695 0.63 -3.4
2,884,962 - Psest_2695 0.63 +0.1
2,885,016 - Psest_2695 0.67 -0.8
2,885,334 + -2.4
2,885,436 - -1.0
2,885,436 - +1.3
2,885,436 - +0.3
2,885,436 - +3.5
2,885,442 - -1.3
2,885,442 - -0.8
2,885,465 + -0.0
2,885,466 - -1.9
2,885,477 + -0.8
2,885,478 - -2.4
2,885,607 - -0.5
2,885,608 + +1.5
2,885,608 + -0.4
2,885,608 + +2.8
2,885,608 + -0.4
2,885,608 + -1.4
2,885,608 + -0.5
2,885,608 + +0.4
2,885,608 + +2.1
2,885,608 + -2.6
2,885,608 + -1.1
2,885,608 + -2.9
2,885,608 + -2.7
2,885,608 + -3.7
2,885,608 + +0.5
2,885,608 + +1.3
2,885,608 + -0.5
2,885,609 - -1.7
2,885,609 - +0.7
2,885,609 - -0.3
2,885,609 - -0.4
2,885,609 - +0.3
2,885,609 - +1.1
2,885,609 - -2.1
2,885,609 - +0.1
2,885,609 - -2.1
2,886,401 - +1.2
2,886,439 - -2.4
2,886,441 + -0.0
2,886,442 - +0.1
2,886,442 - -0.8
2,886,519 + Psest_2697 0.10 -2.0
2,886,519 + Psest_2697 0.10 +0.4
2,886,519 + Psest_2697 0.10 +0.4
2,886,519 + Psest_2697 0.10 +1.0
2,886,519 + Psest_2697 0.10 +0.8
2,886,519 + Psest_2697 0.10 -2.4
2,886,519 + Psest_2697 0.10 -0.1
2,886,519 + Psest_2697 0.10 +0.9
2,886,519 + Psest_2697 0.10 -0.3
2,886,519 + Psest_2697 0.10 +3.0
2,886,519 + Psest_2697 0.10 -2.0
2,886,519 + Psest_2697 0.10 -2.0
2,886,519 + Psest_2697 0.10 -1.7
2,886,519 + Psest_2697 0.10 +0.1
2,886,519 + Psest_2697 0.10 -2.6
2,886,520 - Psest_2697 0.11 -3.4
2,886,520 - Psest_2697 0.11 -0.5
2,886,520 - Psest_2697 0.11 -0.3
2,886,520 - Psest_2697 0.11 +0.6
2,886,520 - Psest_2697 0.11 +1.0
2,886,520 - Psest_2697 0.11 -3.1
2,886,520 - Psest_2697 0.11 -2.6
2,886,520 - Psest_2697 0.11 -0.6
2,886,520 - Psest_2697 0.11 -1.8
2,886,520 - Psest_2697 0.11 +0.8
2,886,520 - Psest_2697 0.11 -0.3
2,886,573 + Psest_2697 0.16 +0.9
2,886,573 + Psest_2697 0.16 -1.8
2,886,573 + Psest_2697 0.16 -1.4
2,886,573 + Psest_2697 0.16 +0.5
2,886,573 + Psest_2697 0.16 +0.9
2,886,574 - Psest_2697 0.16 -2.0
2,886,621 + Psest_2697 0.21 -2.3
2,886,621 + Psest_2697 0.21 +2.0
2,886,621 + Psest_2697 0.21 +0.9
2,886,622 - Psest_2697 0.21 -0.7
2,886,699 + Psest_2697 0.28 +1.6
2,886,699 + Psest_2697 0.28 +0.6
2,886,699 + Psest_2697 0.28 +0.3
2,886,700 - Psest_2697 0.28 +1.6
2,886,700 - Psest_2697 0.28 -1.0
2,886,700 - Psest_2697 0.28 -1.1
2,886,820 - Psest_2697 0.40 -2.6
2,886,820 - Psest_2697 0.40 -1.3
2,886,820 - Psest_2697 0.40 +1.5
2,886,820 - Psest_2697 0.40 -3.1
2,886,820 - Psest_2697 0.40 -3.6
2,886,961 - Psest_2697 0.54 -2.1
2,887,002 + Psest_2697 0.58 -0.4
2,887,002 + Psest_2697 0.58 +0.2
2,887,002 + Psest_2697 0.58 -0.7
2,887,003 - Psest_2697 0.58 -1.6
2,887,104 + Psest_2697 0.68 -3.3
2,887,104 + Psest_2697 0.68 -3.0
2,887,105 - Psest_2697 0.68 +1.8
2,887,236 + Psest_2697 0.81 -0.3
2,887,236 + Psest_2697 0.81 -2.3
2,887,237 - Psest_2697 0.82 -1.9
2,887,237 - Psest_2697 0.82 +0.0
2,887,237 - Psest_2697 0.82 -1.8
2,887,237 - Psest_2697 0.82 -3.8
2,887,237 - Psest_2697 0.82 +1.3
2,887,279 + Psest_2697 0.86 -3.1
2,887,279 + Psest_2697 0.86 +0.9
2,887,279 + Psest_2697 0.86 +0.2
2,887,335 + +0.8
2,887,335 + -2.4

Or see this region's nucleotide sequence