Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2695 and Psest_2696 are separated by 109 nucleotides Psest_2696 and Psest_2697 are separated by 71 nucleotides
Psest_2695: Psest_2695 - Sugar phosphate permease, at 2,884,109 to 2,885,452
_2695
Psest_2696: Psest_2696 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,885,562 to 2,886,341
_2696
Psest_2697: Psest_2697 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 2,886,413 to 2,887,423
_2697
Position (kb)
2885
2886
2887 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2884.872 kb on + strand, within Psest_2695 at 2884.873 kb on - strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.957 kb on + strand, within Psest_2695 at 2884.957 kb on + strand, within Psest_2695 at 2884.957 kb on + strand, within Psest_2695 at 2884.957 kb on + strand, within Psest_2695 at 2884.958 kb on - strand, within Psest_2695 at 2884.958 kb on - strand, within Psest_2695 at 2884.958 kb on - strand, within Psest_2695 at 2884.958 kb on - strand, within Psest_2695 at 2884.961 kb on + strand, within Psest_2695 at 2884.962 kb on - strand, within Psest_2695 at 2884.962 kb on - strand, within Psest_2695 at 2884.962 kb on - strand, within Psest_2695 at 2885.016 kb on - strand, within Psest_2695 at 2885.334 kb on + strand at 2885.436 kb on - strand at 2885.436 kb on - strand at 2885.436 kb on - strand at 2885.436 kb on - strand at 2885.442 kb on - strand at 2885.442 kb on - strand at 2885.465 kb on + strand at 2885.466 kb on - strand at 2885.477 kb on + strand at 2885.478 kb on - strand at 2885.607 kb on - strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2886.401 kb on - strand at 2886.439 kb on - strand at 2886.441 kb on + strand at 2886.442 kb on - strand at 2886.442 kb on - strand at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.519 kb on + strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.520 kb on - strand, within Psest_2697 at 2886.573 kb on + strand, within Psest_2697 at 2886.573 kb on + strand, within Psest_2697 at 2886.573 kb on + strand, within Psest_2697 at 2886.573 kb on + strand, within Psest_2697 at 2886.573 kb on + strand, within Psest_2697 at 2886.574 kb on - strand, within Psest_2697 at 2886.621 kb on + strand, within Psest_2697 at 2886.621 kb on + strand, within Psest_2697 at 2886.621 kb on + strand, within Psest_2697 at 2886.622 kb on - strand, within Psest_2697 at 2886.699 kb on + strand, within Psest_2697 at 2886.699 kb on + strand, within Psest_2697 at 2886.699 kb on + strand, within Psest_2697 at 2886.700 kb on - strand, within Psest_2697 at 2886.700 kb on - strand, within Psest_2697 at 2886.700 kb on - strand, within Psest_2697 at 2886.820 kb on - strand, within Psest_2697 at 2886.820 kb on - strand, within Psest_2697 at 2886.820 kb on - strand, within Psest_2697 at 2886.820 kb on - strand, within Psest_2697 at 2886.820 kb on - strand, within Psest_2697 at 2886.961 kb on - strand, within Psest_2697 at 2887.002 kb on + strand, within Psest_2697 at 2887.002 kb on + strand, within Psest_2697 at 2887.002 kb on + strand, within Psest_2697 at 2887.003 kb on - strand, within Psest_2697 at 2887.104 kb on + strand, within Psest_2697 at 2887.104 kb on + strand, within Psest_2697 at 2887.105 kb on - strand, within Psest_2697 at 2887.236 kb on + strand, within Psest_2697 at 2887.236 kb on + strand, within Psest_2697 at 2887.237 kb on - strand, within Psest_2697 at 2887.237 kb on - strand, within Psest_2697 at 2887.237 kb on - strand, within Psest_2697 at 2887.237 kb on - strand, within Psest_2697 at 2887.237 kb on - strand, within Psest_2697 at 2887.279 kb on + strand, within Psest_2697 at 2887.279 kb on + strand, within Psest_2697 at 2887.279 kb on + strand, within Psest_2697 at 2887.335 kb on + strand at 2887.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 2,884,872 + Psest_2695 0.57 +1.2 2,884,873 - Psest_2695 0.57 -0.1 2,884,953 + Psest_2695 0.63 -0.2 2,884,953 + Psest_2695 0.63 -0.7 2,884,953 + Psest_2695 0.63 -1.4 2,884,953 + Psest_2695 0.63 +0.4 2,884,953 + Psest_2695 0.63 -1.8 2,884,953 + Psest_2695 0.63 +0.7 2,884,953 + Psest_2695 0.63 +0.2 2,884,953 + Psest_2695 0.63 -0.0 2,884,953 + Psest_2695 0.63 -0.1 2,884,953 + Psest_2695 0.63 +1.2 2,884,953 + Psest_2695 0.63 +0.6 2,884,953 + Psest_2695 0.63 +0.1 2,884,953 + Psest_2695 0.63 -3.9 2,884,954 - Psest_2695 0.63 +0.3 2,884,954 - Psest_2695 0.63 -3.0 2,884,954 - Psest_2695 0.63 -0.7 2,884,954 - Psest_2695 0.63 -3.0 2,884,954 - Psest_2695 0.63 +0.6 2,884,954 - Psest_2695 0.63 -2.0 2,884,954 - Psest_2695 0.63 +0.2 2,884,954 - Psest_2695 0.63 -1.7 2,884,954 - Psest_2695 0.63 +1.8 2,884,954 - Psest_2695 0.63 +0.6 2,884,954 - Psest_2695 0.63 -0.5 2,884,954 - Psest_2695 0.63 -3.0 2,884,954 - Psest_2695 0.63 +0.2 2,884,954 - Psest_2695 0.63 -2.2 2,884,954 - Psest_2695 0.63 +0.7 2,884,954 - Psest_2695 0.63 +0.6 2,884,957 + Psest_2695 0.63 -0.8 2,884,957 + Psest_2695 0.63 -0.9 2,884,957 + Psest_2695 0.63 -0.3 2,884,957 + Psest_2695 0.63 +0.4 2,884,958 - Psest_2695 0.63 -2.6 2,884,958 - Psest_2695 0.63 +0.6 2,884,958 - Psest_2695 0.63 -3.5 2,884,958 - Psest_2695 0.63 +0.2 2,884,961 + Psest_2695 0.63 -1.4 2,884,962 - Psest_2695 0.63 +0.6 2,884,962 - Psest_2695 0.63 -3.4 2,884,962 - Psest_2695 0.63 +0.1 2,885,016 - Psest_2695 0.67 -0.8 2,885,334 + -2.4 2,885,436 - -1.0 2,885,436 - +1.3 2,885,436 - +0.3 2,885,436 - +3.5 2,885,442 - -1.3 2,885,442 - -0.8 2,885,465 + -0.0 2,885,466 - -1.9 2,885,477 + -0.8 2,885,478 - -2.4 2,885,607 - -0.5 2,885,608 + +1.5 2,885,608 + -0.4 2,885,608 + +2.8 2,885,608 + -0.4 2,885,608 + -1.4 2,885,608 + -0.5 2,885,608 + +0.4 2,885,608 + +2.1 2,885,608 + -2.6 2,885,608 + -1.1 2,885,608 + -2.9 2,885,608 + -2.7 2,885,608 + -3.7 2,885,608 + +0.5 2,885,608 + +1.3 2,885,608 + -0.5 2,885,609 - -1.7 2,885,609 - +0.7 2,885,609 - -0.3 2,885,609 - -0.4 2,885,609 - +0.3 2,885,609 - +1.1 2,885,609 - -2.1 2,885,609 - +0.1 2,885,609 - -2.1 2,886,401 - +1.2 2,886,439 - -2.4 2,886,441 + -0.0 2,886,442 - +0.1 2,886,442 - -0.8 2,886,519 + Psest_2697 0.10 -2.0 2,886,519 + Psest_2697 0.10 +0.4 2,886,519 + Psest_2697 0.10 +0.4 2,886,519 + Psest_2697 0.10 +1.0 2,886,519 + Psest_2697 0.10 +0.8 2,886,519 + Psest_2697 0.10 -2.4 2,886,519 + Psest_2697 0.10 -0.1 2,886,519 + Psest_2697 0.10 +0.9 2,886,519 + Psest_2697 0.10 -0.3 2,886,519 + Psest_2697 0.10 +3.0 2,886,519 + Psest_2697 0.10 -2.0 2,886,519 + Psest_2697 0.10 -2.0 2,886,519 + Psest_2697 0.10 -1.7 2,886,519 + Psest_2697 0.10 +0.1 2,886,519 + Psest_2697 0.10 -2.6 2,886,520 - Psest_2697 0.11 -3.4 2,886,520 - Psest_2697 0.11 -0.5 2,886,520 - Psest_2697 0.11 -0.3 2,886,520 - Psest_2697 0.11 +0.6 2,886,520 - Psest_2697 0.11 +1.0 2,886,520 - Psest_2697 0.11 -3.1 2,886,520 - Psest_2697 0.11 -2.6 2,886,520 - Psest_2697 0.11 -0.6 2,886,520 - Psest_2697 0.11 -1.8 2,886,520 - Psest_2697 0.11 +0.8 2,886,520 - Psest_2697 0.11 -0.3 2,886,573 + Psest_2697 0.16 +0.9 2,886,573 + Psest_2697 0.16 -1.8 2,886,573 + Psest_2697 0.16 -1.4 2,886,573 + Psest_2697 0.16 +0.5 2,886,573 + Psest_2697 0.16 +0.9 2,886,574 - Psest_2697 0.16 -2.0 2,886,621 + Psest_2697 0.21 -2.3 2,886,621 + Psest_2697 0.21 +2.0 2,886,621 + Psest_2697 0.21 +0.9 2,886,622 - Psest_2697 0.21 -0.7 2,886,699 + Psest_2697 0.28 +1.6 2,886,699 + Psest_2697 0.28 +0.6 2,886,699 + Psest_2697 0.28 +0.3 2,886,700 - Psest_2697 0.28 +1.6 2,886,700 - Psest_2697 0.28 -1.0 2,886,700 - Psest_2697 0.28 -1.1 2,886,820 - Psest_2697 0.40 -2.6 2,886,820 - Psest_2697 0.40 -1.3 2,886,820 - Psest_2697 0.40 +1.5 2,886,820 - Psest_2697 0.40 -3.1 2,886,820 - Psest_2697 0.40 -3.6 2,886,961 - Psest_2697 0.54 -2.1 2,887,002 + Psest_2697 0.58 -0.4 2,887,002 + Psest_2697 0.58 +0.2 2,887,002 + Psest_2697 0.58 -0.7 2,887,003 - Psest_2697 0.58 -1.6 2,887,104 + Psest_2697 0.68 -3.3 2,887,104 + Psest_2697 0.68 -3.0 2,887,105 - Psest_2697 0.68 +1.8 2,887,236 + Psest_2697 0.81 -0.3 2,887,236 + Psest_2697 0.81 -2.3 2,887,237 - Psest_2697 0.82 -1.9 2,887,237 - Psest_2697 0.82 +0.0 2,887,237 - Psest_2697 0.82 -1.8 2,887,237 - Psest_2697 0.82 -3.8 2,887,237 - Psest_2697 0.82 +1.3 2,887,279 + Psest_2697 0.86 -3.1 2,887,279 + Psest_2697 0.86 +0.9 2,887,279 + Psest_2697 0.86 +0.2 2,887,335 + +0.8 2,887,335 + -2.4
Or see this region's nucleotide sequence