Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2693

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2692 and Psest_2693 are separated by 71 nucleotidesPsest_2693 and Psest_2694 are separated by 15 nucleotides Psest_2692: Psest_2692 - catechol 1,2-dioxygenase, proteobacterial, at 2,881,633 to 2,882,574 _2692 Psest_2693: Psest_2693 - muconolactone delta-isomerase, at 2,882,646 to 2,882,936 _2693 Psest_2694: Psest_2694 - muconate and chloromuconate cycloisomerases, at 2,882,952 to 2,884,073 _2694 Position (kb) 2882 2883Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2881.835 kb on + strand, within Psest_2692at 2881.835 kb on + strand, within Psest_2692at 2881.893 kb on + strand, within Psest_2692at 2881.894 kb on - strand, within Psest_2692at 2881.945 kb on + strand, within Psest_2692at 2881.946 kb on - strand, within Psest_2692at 2881.946 kb on - strand, within Psest_2692at 2881.946 kb on - strand, within Psest_2692at 2881.946 kb on - strand, within Psest_2692at 2882.009 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.052 kb on - strand, within Psest_2692at 2882.052 kb on - strand, within Psest_2692at 2882.075 kb on + strand, within Psest_2692at 2882.075 kb on + strand, within Psest_2692at 2882.075 kb on + strand, within Psest_2692at 2882.076 kb on - strand, within Psest_2692at 2882.076 kb on - strand, within Psest_2692at 2882.076 kb on - strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.082 kb on - strand, within Psest_2692at 2882.082 kb on - strand, within Psest_2692at 2882.082 kb on - strand, within Psest_2692at 2882.246 kb on + strand, within Psest_2692at 2882.246 kb on + strand, within Psest_2692at 2882.246 kb on + strand, within Psest_2692at 2882.393 kb on + strand, within Psest_2692at 2882.393 kb on + strand, within Psest_2692at 2882.566 kb on + strandat 2882.567 kb on - strandat 2882.593 kb on + strandat 2882.593 kb on + strandat 2882.593 kb on + strandat 2882.593 kb on + strandat 2882.593 kb on + strandat 2882.593 kb on + strandat 2882.594 kb on - strandat 2882.594 kb on - strandat 2882.594 kb on - strandat 2882.779 kb on + strand, within Psest_2693at 2882.779 kb on + strand, within Psest_2693at 2882.780 kb on - strand, within Psest_2693at 2882.780 kb on - strand, within Psest_2693at 2882.780 kb on - strand, within Psest_2693at 2882.780 kb on - strand, within Psest_2693at 2882.922 kb on + strandat 2882.954 kb on - strandat 2883.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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2,881,835 + Psest_2692 0.21 +1.0
2,881,835 + Psest_2692 0.21 +1.8
2,881,893 + Psest_2692 0.28 -1.6
2,881,894 - Psest_2692 0.28 +0.0
2,881,945 + Psest_2692 0.33 +0.3
2,881,946 - Psest_2692 0.33 -0.4
2,881,946 - Psest_2692 0.33 -0.3
2,881,946 - Psest_2692 0.33 +0.3
2,881,946 - Psest_2692 0.33 -2.2
2,882,009 + Psest_2692 0.40 +0.4
2,882,051 + Psest_2692 0.44 +0.3
2,882,051 + Psest_2692 0.44 -0.9
2,882,051 + Psest_2692 0.44 -2.4
2,882,051 + Psest_2692 0.44 +0.7
2,882,051 + Psest_2692 0.44 -0.4
2,882,051 + Psest_2692 0.44 -1.5
2,882,052 - Psest_2692 0.44 -2.2
2,882,052 - Psest_2692 0.44 +1.7
2,882,075 + Psest_2692 0.47 +1.2
2,882,075 + Psest_2692 0.47 -2.7
2,882,075 + Psest_2692 0.47 -0.5
2,882,076 - Psest_2692 0.47 -2.0
2,882,076 - Psest_2692 0.47 +0.3
2,882,076 - Psest_2692 0.47 -1.6
2,882,081 + Psest_2692 0.48 -3.5
2,882,081 + Psest_2692 0.48 +0.6
2,882,081 + Psest_2692 0.48 +0.1
2,882,081 + Psest_2692 0.48 +0.3
2,882,081 + Psest_2692 0.48 -3.9
2,882,081 + Psest_2692 0.48 -1.2
2,882,081 + Psest_2692 0.48 +0.3
2,882,082 - Psest_2692 0.48 -0.4
2,882,082 - Psest_2692 0.48 +2.9
2,882,082 - Psest_2692 0.48 +0.2
2,882,246 + Psest_2692 0.65 -0.8
2,882,246 + Psest_2692 0.65 -3.3
2,882,246 + Psest_2692 0.65 -2.4
2,882,393 + Psest_2692 0.81 -0.3
2,882,393 + Psest_2692 0.81 +0.3
2,882,566 + +0.1
2,882,567 - -0.8
2,882,593 + -2.0
2,882,593 + +1.6
2,882,593 + -0.0
2,882,593 + -2.4
2,882,593 + +1.7
2,882,593 + +2.0
2,882,594 - -1.4
2,882,594 - -3.4
2,882,594 - -2.5
2,882,779 + Psest_2693 0.46 -0.3
2,882,779 + Psest_2693 0.46 +0.7
2,882,780 - Psest_2693 0.46 -1.6
2,882,780 - Psest_2693 0.46 -2.1
2,882,780 - Psest_2693 0.46 +2.4
2,882,780 - Psest_2693 0.46 +2.0
2,882,922 + -1.5
2,882,954 - -2.0
2,883,019 - -0.8

Or see this region's nucleotide sequence