Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2692 and Psest_2693 are separated by 71 nucleotides Psest_2693 and Psest_2694 are separated by 15 nucleotides
Psest_2692: Psest_2692 - catechol 1,2-dioxygenase, proteobacterial, at 2,881,633 to 2,882,574
_2692
Psest_2693: Psest_2693 - muconolactone delta-isomerase, at 2,882,646 to 2,882,936
_2693
Psest_2694: Psest_2694 - muconate and chloromuconate cycloisomerases, at 2,882,952 to 2,884,073
_2694
Position (kb)
2882
2883 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2881.835 kb on + strand, within Psest_2692 at 2881.835 kb on + strand, within Psest_2692 at 2881.893 kb on + strand, within Psest_2692 at 2881.894 kb on - strand, within Psest_2692 at 2881.945 kb on + strand, within Psest_2692 at 2881.946 kb on - strand, within Psest_2692 at 2881.946 kb on - strand, within Psest_2692 at 2881.946 kb on - strand, within Psest_2692 at 2881.946 kb on - strand, within Psest_2692 at 2882.009 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.052 kb on - strand, within Psest_2692 at 2882.052 kb on - strand, within Psest_2692 at 2882.075 kb on + strand, within Psest_2692 at 2882.075 kb on + strand, within Psest_2692 at 2882.075 kb on + strand, within Psest_2692 at 2882.076 kb on - strand, within Psest_2692 at 2882.076 kb on - strand, within Psest_2692 at 2882.076 kb on - strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.082 kb on - strand, within Psest_2692 at 2882.082 kb on - strand, within Psest_2692 at 2882.082 kb on - strand, within Psest_2692 at 2882.246 kb on + strand, within Psest_2692 at 2882.246 kb on + strand, within Psest_2692 at 2882.246 kb on + strand, within Psest_2692 at 2882.393 kb on + strand, within Psest_2692 at 2882.393 kb on + strand, within Psest_2692 at 2882.566 kb on + strand at 2882.567 kb on - strand at 2882.593 kb on + strand at 2882.593 kb on + strand at 2882.593 kb on + strand at 2882.593 kb on + strand at 2882.593 kb on + strand at 2882.593 kb on + strand at 2882.594 kb on - strand at 2882.594 kb on - strand at 2882.594 kb on - strand at 2882.779 kb on + strand, within Psest_2693 at 2882.779 kb on + strand, within Psest_2693 at 2882.780 kb on - strand, within Psest_2693 at 2882.780 kb on - strand, within Psest_2693 at 2882.780 kb on - strand, within Psest_2693 at 2882.780 kb on - strand, within Psest_2693 at 2882.922 kb on + strand at 2882.954 kb on - strand at 2883.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 2,881,835 + Psest_2692 0.21 +1.0 2,881,835 + Psest_2692 0.21 +1.8 2,881,893 + Psest_2692 0.28 -1.6 2,881,894 - Psest_2692 0.28 +0.0 2,881,945 + Psest_2692 0.33 +0.3 2,881,946 - Psest_2692 0.33 -0.4 2,881,946 - Psest_2692 0.33 -0.3 2,881,946 - Psest_2692 0.33 +0.3 2,881,946 - Psest_2692 0.33 -2.2 2,882,009 + Psest_2692 0.40 +0.4 2,882,051 + Psest_2692 0.44 +0.3 2,882,051 + Psest_2692 0.44 -0.9 2,882,051 + Psest_2692 0.44 -2.4 2,882,051 + Psest_2692 0.44 +0.7 2,882,051 + Psest_2692 0.44 -0.4 2,882,051 + Psest_2692 0.44 -1.5 2,882,052 - Psest_2692 0.44 -2.2 2,882,052 - Psest_2692 0.44 +1.7 2,882,075 + Psest_2692 0.47 +1.2 2,882,075 + Psest_2692 0.47 -2.7 2,882,075 + Psest_2692 0.47 -0.5 2,882,076 - Psest_2692 0.47 -2.0 2,882,076 - Psest_2692 0.47 +0.3 2,882,076 - Psest_2692 0.47 -1.6 2,882,081 + Psest_2692 0.48 -3.5 2,882,081 + Psest_2692 0.48 +0.6 2,882,081 + Psest_2692 0.48 +0.1 2,882,081 + Psest_2692 0.48 +0.3 2,882,081 + Psest_2692 0.48 -3.9 2,882,081 + Psest_2692 0.48 -1.2 2,882,081 + Psest_2692 0.48 +0.3 2,882,082 - Psest_2692 0.48 -0.4 2,882,082 - Psest_2692 0.48 +2.9 2,882,082 - Psest_2692 0.48 +0.2 2,882,246 + Psest_2692 0.65 -0.8 2,882,246 + Psest_2692 0.65 -3.3 2,882,246 + Psest_2692 0.65 -2.4 2,882,393 + Psest_2692 0.81 -0.3 2,882,393 + Psest_2692 0.81 +0.3 2,882,566 + +0.1 2,882,567 - -0.8 2,882,593 + -2.0 2,882,593 + +1.6 2,882,593 + -0.0 2,882,593 + -2.4 2,882,593 + +1.7 2,882,593 + +2.0 2,882,594 - -1.4 2,882,594 - -3.4 2,882,594 - -2.5 2,882,779 + Psest_2693 0.46 -0.3 2,882,779 + Psest_2693 0.46 +0.7 2,882,780 - Psest_2693 0.46 -1.6 2,882,780 - Psest_2693 0.46 -2.1 2,882,780 - Psest_2693 0.46 +2.4 2,882,780 - Psest_2693 0.46 +2.0 2,882,922 + -1.5 2,882,954 - -2.0 2,883,019 - -0.8
Or see this region's nucleotide sequence