Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2560 and Psest_2561 are separated by 9 nucleotides Psest_2561 and Psest_2562 are separated by 1 nucleotides
Psest_2560: Psest_2560 - Zinc metalloprotease (elastase), at 2,741,818 to 2,742,861
_2560
Psest_2561: Psest_2561 - hypothetical protein, at 2,742,871 to 2,743,203
_2561
Psest_2562: Psest_2562 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,743,205 to 2,745,541
_2562
Position (kb)
2742
2743
2744 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2741.981 kb on + strand, within Psest_2560 at 2741.982 kb on - strand, within Psest_2560 at 2742.093 kb on - strand, within Psest_2560 at 2742.103 kb on + strand, within Psest_2560 at 2742.103 kb on + strand, within Psest_2560 at 2742.103 kb on + strand, within Psest_2560 at 2742.104 kb on - strand, within Psest_2560 at 2742.104 kb on - strand, within Psest_2560 at 2742.104 kb on - strand, within Psest_2560 at 2742.104 kb on - strand, within Psest_2560 at 2742.124 kb on + strand, within Psest_2560 at 2742.124 kb on + strand, within Psest_2560 at 2742.124 kb on + strand, within Psest_2560 at 2742.124 kb on + strand, within Psest_2560 at 2742.124 kb on + strand, within Psest_2560 at 2742.124 kb on + strand, within Psest_2560 at 2742.124 kb on + strand, within Psest_2560 at 2742.124 kb on + strand, within Psest_2560 at 2742.124 kb on + strand, within Psest_2560 at 2742.124 kb on + strand, within Psest_2560 at 2742.125 kb on - strand, within Psest_2560 at 2742.125 kb on - strand, within Psest_2560 at 2742.125 kb on - strand, within Psest_2560 at 2742.125 kb on - strand, within Psest_2560 at 2742.125 kb on - strand, within Psest_2560 at 2742.125 kb on - strand, within Psest_2560 at 2742.125 kb on - strand, within Psest_2560 at 2742.199 kb on + strand, within Psest_2560 at 2742.353 kb on - strand, within Psest_2560 at 2742.353 kb on - strand, within Psest_2560 at 2742.353 kb on - strand, within Psest_2560 at 2742.529 kb on + strand, within Psest_2560 at 2742.529 kb on + strand, within Psest_2560 at 2742.529 kb on + strand, within Psest_2560 at 2742.618 kb on + strand, within Psest_2560 at 2742.618 kb on + strand, within Psest_2560 at 2742.619 kb on - strand, within Psest_2560 at 2742.646 kb on + strand, within Psest_2560 at 2742.647 kb on - strand, within Psest_2560 at 2742.647 kb on - strand, within Psest_2560 at 2742.674 kb on - strand, within Psest_2560 at 2742.848 kb on + strand at 2742.859 kb on + strand at 2742.912 kb on - strand, within Psest_2561 at 2743.201 kb on + strand at 2743.337 kb on + strand at 2743.338 kb on - strand at 2743.482 kb on + strand, within Psest_2562 at 2743.482 kb on + strand, within Psest_2562 at 2743.482 kb on + strand, within Psest_2562 at 2743.590 kb on - strand, within Psest_2562 at 2743.590 kb on - strand, within Psest_2562 at 2743.651 kb on + strand, within Psest_2562 at 2743.651 kb on + strand, within Psest_2562 at 2743.651 kb on + strand, within Psest_2562 at 2743.651 kb on + strand, within Psest_2562 at 2743.651 kb on + strand, within Psest_2562 at 2743.651 kb on + strand, within Psest_2562 at 2743.651 kb on + strand, within Psest_2562 at 2743.651 kb on + strand, within Psest_2562 at 2743.652 kb on - strand, within Psest_2562 at 2743.652 kb on - strand, within Psest_2562 at 2743.652 kb on - strand, within Psest_2562 at 2743.921 kb on - strand, within Psest_2562 at 2744.052 kb on + strand, within Psest_2562 at 2744.052 kb on + strand, within Psest_2562 at 2744.052 kb on + strand, within Psest_2562 at 2744.052 kb on + strand, within Psest_2562 at 2744.053 kb on - strand, within Psest_2562 at 2744.053 kb on - strand, within Psest_2562 at 2744.118 kb on - strand, within Psest_2562
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 2,741,981 + Psest_2560 0.16 -1.5 2,741,982 - Psest_2560 0.16 -0.8 2,742,093 - Psest_2560 0.26 +2.5 2,742,103 + Psest_2560 0.27 +0.1 2,742,103 + Psest_2560 0.27 -2.8 2,742,103 + Psest_2560 0.27 -2.7 2,742,104 - Psest_2560 0.27 +0.2 2,742,104 - Psest_2560 0.27 +0.1 2,742,104 - Psest_2560 0.27 -2.7 2,742,104 - Psest_2560 0.27 +0.3 2,742,124 + Psest_2560 0.29 +0.1 2,742,124 + Psest_2560 0.29 -3.6 2,742,124 + Psest_2560 0.29 -1.4 2,742,124 + Psest_2560 0.29 +1.1 2,742,124 + Psest_2560 0.29 -2.3 2,742,124 + Psest_2560 0.29 -2.3 2,742,124 + Psest_2560 0.29 +0.7 2,742,124 + Psest_2560 0.29 -1.5 2,742,124 + Psest_2560 0.29 +0.1 2,742,124 + Psest_2560 0.29 -2.2 2,742,125 - Psest_2560 0.29 -1.5 2,742,125 - Psest_2560 0.29 +1.5 2,742,125 - Psest_2560 0.29 +0.8 2,742,125 - Psest_2560 0.29 -0.5 2,742,125 - Psest_2560 0.29 -1.6 2,742,125 - Psest_2560 0.29 +1.4 2,742,125 - Psest_2560 0.29 -0.3 2,742,199 + Psest_2560 0.36 -2.1 2,742,353 - Psest_2560 0.51 -0.6 2,742,353 - Psest_2560 0.51 +0.3 2,742,353 - Psest_2560 0.51 -3.9 2,742,529 + Psest_2560 0.68 +1.5 2,742,529 + Psest_2560 0.68 -0.0 2,742,529 + Psest_2560 0.68 +0.7 2,742,618 + Psest_2560 0.77 -2.2 2,742,618 + Psest_2560 0.77 +1.3 2,742,619 - Psest_2560 0.77 -1.0 2,742,646 + Psest_2560 0.79 +0.2 2,742,647 - Psest_2560 0.79 +0.6 2,742,647 - Psest_2560 0.79 -2.0 2,742,674 - Psest_2560 0.82 -2.1 2,742,848 + +1.9 2,742,859 + +0.2 2,742,912 - Psest_2561 0.12 -0.9 2,743,201 + +0.9 2,743,337 + +0.8 2,743,338 - -0.5 2,743,482 + Psest_2562 0.12 -0.4 2,743,482 + Psest_2562 0.12 +0.2 2,743,482 + Psest_2562 0.12 +1.6 2,743,590 - Psest_2562 0.16 +0.5 2,743,590 - Psest_2562 0.16 +0.6 2,743,651 + Psest_2562 0.19 -3.3 2,743,651 + Psest_2562 0.19 -1.3 2,743,651 + Psest_2562 0.19 -0.2 2,743,651 + Psest_2562 0.19 -0.8 2,743,651 + Psest_2562 0.19 +0.7 2,743,651 + Psest_2562 0.19 +0.0 2,743,651 + Psest_2562 0.19 +0.3 2,743,651 + Psest_2562 0.19 -2.5 2,743,652 - Psest_2562 0.19 +0.8 2,743,652 - Psest_2562 0.19 +1.2 2,743,652 - Psest_2562 0.19 -1.9 2,743,921 - Psest_2562 0.31 +3.2 2,744,052 + Psest_2562 0.36 +1.1 2,744,052 + Psest_2562 0.36 -3.4 2,744,052 + Psest_2562 0.36 -3.7 2,744,052 + Psest_2562 0.36 -1.3 2,744,053 - Psest_2562 0.36 -2.0 2,744,053 - Psest_2562 0.36 +2.6 2,744,118 - Psest_2562 0.39 +0.5
Or see this region's nucleotide sequence