Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2282

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2281 and Psest_2282 overlap by 8 nucleotidesPsest_2282 and Psest_2283 are separated by 102 nucleotides Psest_2281: Psest_2281 - Phosphoserine aminotransferase, at 2,429,259 to 2,430,359 _2281 Psest_2282: Psest_2282 - Dihydroorotate dehydrogenase, at 2,430,352 to 2,431,197 _2282 Psest_2283: Psest_2283 - Parvulin-like peptidyl-prolyl isomerase, at 2,431,300 to 2,433,156 _2283 Position (kb) 2430 2431 2432Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2429.458 kb on + strand, within Psest_2281at 2429.478 kb on + strand, within Psest_2281at 2429.479 kb on - strand, within Psest_2281at 2429.479 kb on - strand, within Psest_2281at 2429.776 kb on + strand, within Psest_2281at 2429.848 kb on - strand, within Psest_2281at 2429.848 kb on - strand, within Psest_2281at 2429.890 kb on + strand, within Psest_2281at 2429.890 kb on + strand, within Psest_2281at 2429.891 kb on - strand, within Psest_2281at 2429.891 kb on - strand, within Psest_2281at 2429.897 kb on - strand, within Psest_2281at 2429.953 kb on - strand, within Psest_2281at 2429.953 kb on - strand, within Psest_2281at 2430.045 kb on - strand, within Psest_2281at 2430.126 kb on + strand, within Psest_2281at 2430.126 kb on + strand, within Psest_2281at 2430.272 kb on - strandat 2430.272 kb on - strandat 2430.347 kb on + strandat 2430.348 kb on - strandat 2430.357 kb on + strandat 2430.358 kb on - strandat 2430.479 kb on + strand, within Psest_2282at 2430.479 kb on + strand, within Psest_2282at 2430.722 kb on - strand, within Psest_2282at 2430.866 kb on + strand, within Psest_2282at 2430.939 kb on - strand, within Psest_2282

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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2,429,458 + Psest_2281 0.18 +1.3
2,429,478 + Psest_2281 0.20 -3.0
2,429,479 - Psest_2281 0.20 -2.7
2,429,479 - Psest_2281 0.20 -2.0
2,429,776 + Psest_2281 0.47 -1.7
2,429,848 - Psest_2281 0.53 -2.3
2,429,848 - Psest_2281 0.53 +1.0
2,429,890 + Psest_2281 0.57 +0.5
2,429,890 + Psest_2281 0.57 -0.2
2,429,891 - Psest_2281 0.57 -3.7
2,429,891 - Psest_2281 0.57 +2.1
2,429,897 - Psest_2281 0.58 -0.3
2,429,953 - Psest_2281 0.63 -3.3
2,429,953 - Psest_2281 0.63 -3.4
2,430,045 - Psest_2281 0.71 +1.1
2,430,126 + Psest_2281 0.79 -1.5
2,430,126 + Psest_2281 0.79 -0.9
2,430,272 - -2.6
2,430,272 - +1.0
2,430,347 + +0.0
2,430,348 - +0.8
2,430,357 + +2.4
2,430,358 - +0.6
2,430,479 + Psest_2282 0.15 +1.6
2,430,479 + Psest_2282 0.15 +0.4
2,430,722 - Psest_2282 0.44 +1.1
2,430,866 + Psest_2282 0.61 +2.0
2,430,939 - Psest_2282 0.69 +1.4

Or see this region's nucleotide sequence