Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2130 and Psest_2131 are separated by 202 nucleotides Psest_2131 and Psest_2132 are separated by 63 nucleotides
Psest_2130: Psest_2130 - exodeoxyribonuclease III, at 2,262,519 to 2,263,331
_2130
Psest_2131: Psest_2131 - Acetyltransferases, at 2,263,534 to 2,264,169
_2131
Psest_2132: Psest_2132 - Outer membrane protein, at 2,264,233 to 2,266,047
_2132
Position (kb)
2263
2264
2265 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 2262.634 kb on + strand, within Psest_2130 at 2262.635 kb on - strand, within Psest_2130 at 2262.635 kb on - strand, within Psest_2130 at 2262.943 kb on + strand, within Psest_2130 at 2262.944 kb on - strand, within Psest_2130 at 2263.145 kb on - strand, within Psest_2130 at 2263.165 kb on + strand, within Psest_2130 at 2263.350 kb on + strand at 2263.445 kb on - strand at 2263.445 kb on - strand at 2263.445 kb on - strand at 2263.455 kb on - strand at 2263.492 kb on + strand at 2263.493 kb on - strand at 2263.601 kb on - strand, within Psest_2131 at 2263.601 kb on - strand, within Psest_2131 at 2263.633 kb on + strand, within Psest_2131 at 2263.713 kb on - strand, within Psest_2131 at 2263.937 kb on + strand, within Psest_2131 at 2263.937 kb on + strand, within Psest_2131 at 2263.937 kb on + strand, within Psest_2131 at 2263.937 kb on + strand, within Psest_2131 at 2263.938 kb on - strand, within Psest_2131 at 2263.938 kb on - strand, within Psest_2131 at 2264.065 kb on + strand, within Psest_2131 at 2264.168 kb on - strand at 2264.260 kb on - strand at 2264.270 kb on + strand at 2264.306 kb on + strand at 2264.307 kb on - strand at 2264.452 kb on + strand, within Psest_2132 at 2264.452 kb on + strand, within Psest_2132 at 2264.452 kb on + strand, within Psest_2132 at 2264.452 kb on + strand, within Psest_2132 at 2264.452 kb on + strand, within Psest_2132 at 2264.452 kb on + strand, within Psest_2132 at 2264.452 kb on + strand, within Psest_2132 at 2264.452 kb on + strand, within Psest_2132 at 2264.453 kb on - strand, within Psest_2132 at 2264.453 kb on - strand, within Psest_2132 at 2264.453 kb on - strand, within Psest_2132 at 2264.453 kb on - strand, within Psest_2132 at 2264.453 kb on - strand, within Psest_2132 at 2264.453 kb on - strand, within Psest_2132 at 2264.453 kb on - strand, within Psest_2132 at 2264.453 kb on - strand, within Psest_2132 at 2264.453 kb on - strand, within Psest_2132 at 2264.453 kb on - strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.456 kb on + strand, within Psest_2132 at 2264.457 kb on - strand, within Psest_2132 at 2264.457 kb on - strand, within Psest_2132 at 2264.457 kb on - strand, within Psest_2132 at 2264.457 kb on - strand, within Psest_2132 at 2264.457 kb on - strand, within Psest_2132 at 2264.457 kb on - strand, within Psest_2132 at 2264.457 kb on - strand, within Psest_2132 at 2264.457 kb on - strand, within Psest_2132 at 2264.457 kb on - strand, within Psest_2132 at 2265.023 kb on - strand, within Psest_2132
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 2,262,634 + Psest_2130 0.14 +0.6 2,262,635 - Psest_2130 0.14 -2.1 2,262,635 - Psest_2130 0.14 +2.0 2,262,943 + Psest_2130 0.52 +1.4 2,262,944 - Psest_2130 0.52 +1.6 2,263,145 - Psest_2130 0.77 +2.4 2,263,165 + Psest_2130 0.79 +0.9 2,263,350 + +0.6 2,263,445 - -0.9 2,263,445 - -0.7 2,263,445 - +1.1 2,263,455 - -3.4 2,263,492 + +2.0 2,263,493 - +1.0 2,263,601 - Psest_2131 0.11 +1.1 2,263,601 - Psest_2131 0.11 +1.8 2,263,633 + Psest_2131 0.16 +1.9 2,263,713 - Psest_2131 0.28 -3.9 2,263,937 + Psest_2131 0.63 +0.6 2,263,937 + Psest_2131 0.63 -1.6 2,263,937 + Psest_2131 0.63 +2.9 2,263,937 + Psest_2131 0.63 +1.0 2,263,938 - Psest_2131 0.64 +1.9 2,263,938 - Psest_2131 0.64 -2.5 2,264,065 + Psest_2131 0.83 +0.4 2,264,168 - +1.7 2,264,260 - +0.4 2,264,270 + +1.3 2,264,306 + +1.5 2,264,307 - +0.8 2,264,452 + Psest_2132 0.12 -1.5 2,264,452 + Psest_2132 0.12 -5.3 2,264,452 + Psest_2132 0.12 -1.7 2,264,452 + Psest_2132 0.12 -1.2 2,264,452 + Psest_2132 0.12 -2.0 2,264,452 + Psest_2132 0.12 -1.7 2,264,452 + Psest_2132 0.12 -0.2 2,264,452 + Psest_2132 0.12 +0.5 2,264,453 - Psest_2132 0.12 -4.8 2,264,453 - Psest_2132 0.12 -1.0 2,264,453 - Psest_2132 0.12 +1.6 2,264,453 - Psest_2132 0.12 -2.1 2,264,453 - Psest_2132 0.12 -0.2 2,264,453 - Psest_2132 0.12 -3.2 2,264,453 - Psest_2132 0.12 -3.4 2,264,453 - Psest_2132 0.12 -1.6 2,264,453 - Psest_2132 0.12 -3.7 2,264,453 - Psest_2132 0.12 -3.4 2,264,456 + Psest_2132 0.12 -3.2 2,264,456 + Psest_2132 0.12 +0.6 2,264,456 + Psest_2132 0.12 -2.6 2,264,456 + Psest_2132 0.12 -0.6 2,264,456 + Psest_2132 0.12 -0.9 2,264,456 + Psest_2132 0.12 -1.1 2,264,456 + Psest_2132 0.12 -2.3 2,264,456 + Psest_2132 0.12 -0.7 2,264,456 + Psest_2132 0.12 -1.5 2,264,456 + Psest_2132 0.12 -0.3 2,264,456 + Psest_2132 0.12 +0.0 2,264,456 + Psest_2132 0.12 -2.5 2,264,457 - Psest_2132 0.12 -3.2 2,264,457 - Psest_2132 0.12 -2.7 2,264,457 - Psest_2132 0.12 -3.6 2,264,457 - Psest_2132 0.12 -2.8 2,264,457 - Psest_2132 0.12 -3.9 2,264,457 - Psest_2132 0.12 +0.1 2,264,457 - Psest_2132 0.12 +0.7 2,264,457 - Psest_2132 0.12 -3.7 2,264,457 - Psest_2132 0.12 -0.7 2,265,023 - Psest_2132 0.44 +0.3
Or see this region's nucleotide sequence