Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1843

Experiment: Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1842 and Psest_1843 are separated by 80 nucleotidesPsest_1843 and Psest_1844 are separated by 52 nucleotides Psest_1842: Psest_1842 - Chemotaxis signal transduction protein, at 1,946,180 to 1,947,112 _1842 Psest_1843: Psest_1843 - Uncharacterized Fe-S protein, at 1,947,193 to 1,947,993 _1843 Psest_1844: Psest_1844 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,948,046 to 1,949,968 _1844 Position (kb) 1947 1948Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1946.347 kb on + strand, within Psest_1842at 1946.347 kb on + strand, within Psest_1842at 1946.348 kb on - strand, within Psest_1842at 1946.468 kb on + strand, within Psest_1842at 1946.468 kb on + strand, within Psest_1842at 1946.469 kb on - strand, within Psest_1842at 1946.574 kb on - strand, within Psest_1842at 1946.655 kb on - strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.974 kb on - strand, within Psest_1842at 1947.139 kb on + strandat 1947.139 kb on + strandat 1947.140 kb on - strandat 1947.158 kb on + strandat 1947.158 kb on + strandat 1947.159 kb on - strandat 1947.159 kb on - strandat 1947.595 kb on + strand, within Psest_1843at 1947.703 kb on - strand, within Psest_1843at 1947.759 kb on + strand, within Psest_1843at 1948.047 kb on + strandat 1948.113 kb on + strandat 1948.113 kb on + strandat 1948.113 kb on + strandat 1948.114 kb on - strandat 1948.114 kb on - strandat 1948.126 kb on - strandat 1948.248 kb on + strand, within Psest_1844at 1948.248 kb on + strand, within Psest_1844at 1948.248 kb on + strand, within Psest_1844at 1948.248 kb on + strand, within Psest_1844at 1948.248 kb on + strand, within Psest_1844at 1948.248 kb on + strand, within Psest_1844at 1948.248 kb on + strand, within Psest_1844at 1948.249 kb on - strand, within Psest_1844at 1948.249 kb on - strand, within Psest_1844at 1948.249 kb on - strand, within Psest_1844at 1948.291 kb on - strand, within Psest_1844at 1948.306 kb on - strand, within Psest_1844at 1948.306 kb on - strand, within Psest_1844at 1948.592 kb on + strand, within Psest_1844at 1948.592 kb on + strand, within Psest_1844at 1948.592 kb on + strand, within Psest_1844at 1948.593 kb on - strand, within Psest_1844at 1948.593 kb on - strand, within Psest_1844at 1948.614 kb on + strand, within Psest_1844at 1948.614 kb on + strand, within Psest_1844at 1948.614 kb on + strand, within Psest_1844at 1948.614 kb on + strand, within Psest_1844at 1948.614 kb on + strand, within Psest_1844at 1948.615 kb on - strand, within Psest_1844at 1948.615 kb on - strand, within Psest_1844at 1948.615 kb on - strand, within Psest_1844at 1948.615 kb on - strand, within Psest_1844at 1948.615 kb on - strand, within Psest_1844at 1948.629 kb on + strand, within Psest_1844at 1948.629 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.815 kb on + strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.816 kb on - strand, within Psest_1844at 1948.881 kb on + strand, within Psest_1844

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml
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1,946,347 + Psest_1842 0.18 +2.7
1,946,347 + Psest_1842 0.18 +1.6
1,946,348 - Psest_1842 0.18 +0.8
1,946,468 + Psest_1842 0.31 +1.4
1,946,468 + Psest_1842 0.31 -2.6
1,946,469 - Psest_1842 0.31 -0.2
1,946,574 - Psest_1842 0.42 -2.9
1,946,655 - Psest_1842 0.51 +2.0
1,946,966 + Psest_1842 0.84 -0.6
1,946,966 + Psest_1842 0.84 +0.1
1,946,966 + Psest_1842 0.84 +0.4
1,946,966 + Psest_1842 0.84 +1.2
1,946,966 + Psest_1842 0.84 -0.0
1,946,966 + Psest_1842 0.84 +0.6
1,946,966 + Psest_1842 0.84 +1.8
1,946,966 + Psest_1842 0.84 +0.5
1,946,967 - Psest_1842 0.84 +0.5
1,946,967 - Psest_1842 0.84 -0.9
1,946,967 - Psest_1842 0.84 +3.3
1,946,967 - Psest_1842 0.84 +0.6
1,946,967 - Psest_1842 0.84 +1.4
1,946,967 - Psest_1842 0.84 -2.1
1,946,967 - Psest_1842 0.84 +2.4
1,946,974 - Psest_1842 0.85 +1.5
1,947,139 + +0.8
1,947,139 + +1.6
1,947,140 - +1.9
1,947,158 + +0.6
1,947,158 + -0.2
1,947,159 - -2.9
1,947,159 - -1.1
1,947,595 + Psest_1843 0.50 -2.4
1,947,703 - Psest_1843 0.64 +0.2
1,947,759 + Psest_1843 0.71 -2.9
1,948,047 + -1.9
1,948,113 + +0.3
1,948,113 + +1.4
1,948,113 + +1.3
1,948,114 - -0.7
1,948,114 - -0.5
1,948,126 - -1.3
1,948,248 + Psest_1844 0.11 -1.1
1,948,248 + Psest_1844 0.11 -1.5
1,948,248 + Psest_1844 0.11 +1.0
1,948,248 + Psest_1844 0.11 +1.1
1,948,248 + Psest_1844 0.11 +1.6
1,948,248 + Psest_1844 0.11 +1.2
1,948,248 + Psest_1844 0.11 -0.1
1,948,249 - Psest_1844 0.11 +0.5
1,948,249 - Psest_1844 0.11 +0.6
1,948,249 - Psest_1844 0.11 -2.4
1,948,291 - Psest_1844 0.13 -1.5
1,948,306 - Psest_1844 0.14 +0.9
1,948,306 - Psest_1844 0.14 +0.9
1,948,592 + Psest_1844 0.28 +1.5
1,948,592 + Psest_1844 0.28 +1.3
1,948,592 + Psest_1844 0.28 -1.4
1,948,593 - Psest_1844 0.28 -2.7
1,948,593 - Psest_1844 0.28 +3.5
1,948,614 + Psest_1844 0.30 -0.9
1,948,614 + Psest_1844 0.30 +0.6
1,948,614 + Psest_1844 0.30 +1.5
1,948,614 + Psest_1844 0.30 +1.0
1,948,614 + Psest_1844 0.30 -3.4
1,948,615 - Psest_1844 0.30 +0.6
1,948,615 - Psest_1844 0.30 +1.0
1,948,615 - Psest_1844 0.30 +0.3
1,948,615 - Psest_1844 0.30 +1.2
1,948,615 - Psest_1844 0.30 -1.2
1,948,629 + Psest_1844 0.30 +1.2
1,948,629 + Psest_1844 0.30 +2.9
1,948,815 + Psest_1844 0.40 +1.5
1,948,815 + Psest_1844 0.40 +0.5
1,948,815 + Psest_1844 0.40 +0.6
1,948,815 + Psest_1844 0.40 +1.3
1,948,815 + Psest_1844 0.40 -0.2
1,948,815 + Psest_1844 0.40 +0.1
1,948,815 + Psest_1844 0.40 +1.7
1,948,815 + Psest_1844 0.40 +0.8
1,948,815 + Psest_1844 0.40 +0.3
1,948,815 + Psest_1844 0.40 -4.4
1,948,815 + Psest_1844 0.40 +2.6
1,948,815 + Psest_1844 0.40 +1.7
1,948,815 + Psest_1844 0.40 +0.6
1,948,816 - Psest_1844 0.40 -0.8
1,948,816 - Psest_1844 0.40 -0.3
1,948,816 - Psest_1844 0.40 +0.9
1,948,816 - Psest_1844 0.40 -1.1
1,948,816 - Psest_1844 0.40 +1.0
1,948,816 - Psest_1844 0.40 +1.1
1,948,816 - Psest_1844 0.40 +1.5
1,948,816 - Psest_1844 0.40 +0.2
1,948,816 - Psest_1844 0.40 +1.9
1,948,816 - Psest_1844 0.40 +1.3
1,948,816 - Psest_1844 0.40 +0.8
1,948,881 + Psest_1844 0.43 -0.1

Or see this region's nucleotide sequence