Experiment: Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1601 and Psest_1602 overlap by 4 nucleotides Psest_1602 and Psest_1603 are separated by 139 nucleotides
Psest_1601: Psest_1601 - Signal transduction histidine kinase, at 1,704,503 to 1,705,825
_1601
Psest_1602: Psest_1602 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,705,822 to 1,706,499
_1602
Psest_1603: Psest_1603 - Thiol:disulfide interchange protein, at 1,706,639 to 1,708,375
_1603
Position (kb)
1705
1706
1707 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1705.553 kb on + strand, within Psest_1601 at 1705.554 kb on - strand, within Psest_1601 at 1705.554 kb on - strand, within Psest_1601 at 1705.920 kb on + strand, within Psest_1602 at 1706.100 kb on - strand, within Psest_1602 at 1706.100 kb on - strand, within Psest_1602 at 1706.208 kb on - strand, within Psest_1602 at 1706.526 kb on + strand at 1706.544 kb on - strand at 1706.622 kb on + strand at 1706.623 kb on - strand at 1706.626 kb on + strand at 1706.626 kb on + strand at 1706.626 kb on + strand at 1706.626 kb on + strand at 1706.626 kb on + strand at 1706.626 kb on + strand at 1706.626 kb on + strand at 1706.627 kb on - strand at 1706.819 kb on + strand, within Psest_1603 at 1706.819 kb on + strand, within Psest_1603 at 1706.819 kb on + strand, within Psest_1603 at 1706.819 kb on + strand, within Psest_1603 at 1706.819 kb on + strand, within Psest_1603 at 1706.820 kb on - strand, within Psest_1603 at 1706.820 kb on - strand, within Psest_1603 at 1706.820 kb on - strand, within Psest_1603 at 1706.820 kb on - strand, within Psest_1603 at 1706.820 kb on - strand, within Psest_1603 at 1706.820 kb on - strand, within Psest_1603 at 1706.826 kb on - strand, within Psest_1603 at 1706.928 kb on - strand, within Psest_1603 at 1707.269 kb on + strand, within Psest_1603 at 1707.269 kb on + strand, within Psest_1603 at 1707.269 kb on + strand, within Psest_1603 at 1707.269 kb on + strand, within Psest_1603 at 1707.270 kb on - strand, within Psest_1603 at 1707.270 kb on - strand, within Psest_1603 at 1707.270 kb on - strand, within Psest_1603
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.0001 mg/ml remove 1,705,553 + Psest_1601 0.79 -0.9 1,705,554 - Psest_1601 0.79 +0.3 1,705,554 - Psest_1601 0.79 -2.5 1,705,920 + Psest_1602 0.14 -1.3 1,706,100 - Psest_1602 0.41 +0.3 1,706,100 - Psest_1602 0.41 -1.1 1,706,208 - Psest_1602 0.57 -0.6 1,706,526 + +0.0 1,706,544 - +2.3 1,706,622 + -1.1 1,706,623 - +0.8 1,706,626 + -0.7 1,706,626 + -0.7 1,706,626 + +1.3 1,706,626 + -0.3 1,706,626 + +1.7 1,706,626 + +0.3 1,706,626 + -0.3 1,706,627 - -2.3 1,706,819 + Psest_1603 0.10 +0.2 1,706,819 + Psest_1603 0.10 -0.4 1,706,819 + Psest_1603 0.10 -1.3 1,706,819 + Psest_1603 0.10 -1.1 1,706,819 + Psest_1603 0.10 -1.1 1,706,820 - Psest_1603 0.10 -1.5 1,706,820 - Psest_1603 0.10 -0.3 1,706,820 - Psest_1603 0.10 -0.9 1,706,820 - Psest_1603 0.10 -0.3 1,706,820 - Psest_1603 0.10 +0.7 1,706,820 - Psest_1603 0.10 +0.5 1,706,826 - Psest_1603 0.11 -0.2 1,706,928 - Psest_1603 0.17 +0.3 1,707,269 + Psest_1603 0.36 -1.0 1,707,269 + Psest_1603 0.36 -0.8 1,707,269 + Psest_1603 0.36 -0.9 1,707,269 + Psest_1603 0.36 +0.3 1,707,270 - Psest_1603 0.36 -1.5 1,707,270 - Psest_1603 0.36 -0.5 1,707,270 - Psest_1603 0.36 +1.1
Or see this region's nucleotide sequence