Strain Fitness in Shewanella amazonensis SB2B around Sama_3414

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
4,039,441	+		Sama_3413	0.35	+0.1
4,039,441	+		Sama_3413	0.35	-1.0
4,039,441	+		Sama_3413	0.35	-1.2
4,039,441	+		Sama_3413	0.35	+0.5
4,039,441	+		Sama_3413	0.35	+0.5
4,039,441	+		Sama_3413	0.35	-1.5
4,039,441	+		Sama_3413	0.35	+0.7
4,039,441	+		Sama_3413	0.35	-0.1
4,039,441	+		Sama_3413	0.35	+0.1
4,039,441	+		Sama_3413	0.35	-0.7
4,039,441	+		Sama_3413	0.35	+0.4
4,039,441	+		Sama_3413	0.35	+0.1
4,039,441	+		Sama_3413	0.35	-0.0
4,039,442	-		Sama_3413	0.35	+0.9
4,039,442	-		Sama_3413	0.35	-0.1
4,039,442	-		Sama_3413	0.35	-0.4
4,039,442	-		Sama_3413	0.35	+0.6
4,039,442	-		Sama_3413	0.35	+0.2
4,039,442	-		Sama_3413	0.35	-0.1
4,039,442	-		Sama_3413	0.35	-1.6
4,039,469	+		Sama_3413	0.38	+1.5
4,039,523	+		Sama_3413	0.43	+0.2
4,039,523	+		Sama_3413	0.43	+0.1
4,039,523	+		Sama_3413	0.43	-0.1
4,039,523	+		Sama_3413	0.43	-1.3
4,039,524	-		Sama_3413	0.43	-0.6
4,039,599	+		Sama_3413	0.50	+0.4
4,039,618	-		Sama_3413	0.52	+0.1
4,039,684	+		Sama_3413	0.58	-0.1
4,039,684	+		Sama_3413	0.58	-1.9
4,039,685	-		Sama_3413	0.58	-1.6
4,039,720	+		Sama_3413	0.61	-0.2
4,039,720	+		Sama_3413	0.61	-0.4
4,039,720	+		Sama_3413	0.61	-0.2
4,039,720	+		Sama_3413	0.61	+0.6
4,039,720	+		Sama_3413	0.61	-0.1
4,039,721	-		Sama_3413	0.61	+1.2
4,039,721	-		Sama_3413	0.61	+0.1
4,039,721	-		Sama_3413	0.61	+0.5
4,039,721	-		Sama_3413	0.61	-1.1
4,039,728	+		Sama_3413	0.62	+0.2
4,039,728	+		Sama_3413	0.62	-0.1
4,039,738	+		Sama_3413	0.63	-0.1
4,039,738	+		Sama_3413	0.63	-0.1
4,039,738	+		Sama_3413	0.63	+0.8
4,039,738	+		Sama_3413	0.63	-0.7
4,039,738	+		Sama_3413	0.63	-0.0
4,039,738	+		Sama_3413	0.63	-0.6
4,039,738	+		Sama_3413	0.63	-0.1
4,039,739	-		Sama_3413	0.63	-0.7
4,039,739	-		Sama_3413	0.63	+0.7
4,039,741	+		Sama_3413	0.63	+0.6
4,039,742	-		Sama_3413	0.63	-0.0
4,039,813	+		Sama_3413	0.70	+1.7
4,039,813	+		Sama_3413	0.70	-0.2
4,039,813	+		Sama_3413	0.70	+0.7
4,039,813	+		Sama_3413	0.70	+0.1
4,039,814	-		Sama_3413	0.70	+1.0
4,039,814	-		Sama_3413	0.70	-0.6
4,039,814	-		Sama_3413	0.70	+0.7
4,039,814	-		Sama_3413	0.70	-2.0
4,039,814	-		Sama_3413	0.70	-0.2
4,039,814	-		Sama_3413	0.70	+0.2
4,039,814	-		Sama_3413	0.70	+0.3
4,039,837	+		Sama_3413	0.72	+0.2
4,039,912	+		Sama_3413	0.79	-0.1
4,039,912	+		Sama_3413	0.79	+0.2
4,039,913	-		Sama_3413	0.79	+1.0
4,039,913	-		Sama_3413	0.79	-0.1
4,039,913	-		Sama_3413	0.79	+1.8
4,039,913	-		Sama_3413	0.79	+0.4
4,039,931	+		Sama_3413	0.81	-0.0
4,039,972	+		Sama_3413	0.85	-1.1
4,039,972	+		Sama_3413	0.85	-0.0
4,040,005	+		Sama_3413	0.88	+0.2
4,040,005	+		Sama_3413	0.88	+0.1
4,040,034	+				-0.2
4,040,035	-				-1.1
4,040,195	+				-0.2
4,040,200	+				+0.8
4,040,204	-				+0.4
4,040,204	-				-0.4
4,040,226	+				-0.1
4,040,226	+				+0.4
4,040,227	-				+0.4
4,040,227	-				+0.9
4,040,227	-				+2.1
4,040,229	+				-0.1
4,040,229	+				+0.7
4,040,229	+				-0.2
4,040,229	+				+0.2
4,040,230	-				-0.1
4,040,230	-				-0.6
4,040,232	+				-0.3
4,040,232	+				+0.4
4,040,232	+				+0.2
4,040,233	-				+0.1
4,040,261	+				+0.2
4,040,261	+				-0.0
4,040,262	-				+0.7
4,040,348	+				-0.2
4,040,348	+				-0.2
4,040,348	+				+0.7
4,040,348	+				+0.4
4,040,348	+				-0.5
4,040,348	+				+1.5
4,040,348	+				+1.5
4,040,348	+				-0.7
4,040,348	+				-0.4
4,040,349	-				-0.5
4,040,349	-				-2.2
4,040,349	-				-0.0
4,040,349	-				-0.7
4,040,350	+				-0.1
4,040,350	+				+0.5
4,040,350	+				-1.3
4,040,350	+				+0.1
4,040,350	+				-1.0
4,040,350	+				-0.9
4,040,350	+				-0.9
4,040,350	+				+1.0
4,040,350	+				+1.5
4,040,350	+				+0.1
4,040,350	+				-0.7
4,040,351	-				+0.0
4,040,351	-				-0.2
4,040,351	-				+0.7
4,040,351	-				+0.7
4,040,351	-				+0.6
4,040,351	-				+0.5
4,040,351	-				-0.7
4,040,351	-				-0.7
4,040,362	+				-0.0
4,040,362	+				-0.0
4,040,363	-				-0.2
4,040,363	-				+0.4
4,040,455	-				-1.1
4,040,455	-				+0.9
4,040,477	-				-0.1
4,040,505	+				+0.9
4,040,505	+				+0.4
4,040,506	-				+0.2
4,040,506	-				-0.1
4,040,506	-				-0.2
4,040,506	-				-1.4
4,040,506	-				+1.0
4,040,506	-				-0.7
4,040,547	+				+0.2
4,040,547	+				+0.4
4,040,565	+				+0.2
4,040,565	+				+0.3
4,040,565	+				+0.3
4,040,566	-				-1.4
4,040,566	-				+0.8
4,040,566	-				-1.7
4,040,745	+		Sama_3414	0.18	-0.1
4,040,745	+		Sama_3414	0.18	+0.3
4,040,745	+		Sama_3414	0.18	-1.5
4,040,746	-		Sama_3414	0.18	-0.4
4,040,746	-		Sama_3414	0.18	-0.2
4,040,758	-		Sama_3414	0.19	+0.2
4,040,800	+		Sama_3414	0.21	+0.3
4,040,800	+		Sama_3414	0.21	-0.2
4,040,801	-		Sama_3414	0.21	+0.9
4,040,803	+		Sama_3414	0.21	-0.7
4,040,803	+		Sama_3414	0.21	+0.1
4,040,804	-		Sama_3414	0.21	-0.6
4,040,804	-		Sama_3414	0.21	+0.6
4,040,804	-		Sama_3414	0.21	+0.3
4,040,804	-		Sama_3414	0.21	-0.5
4,040,804	-		Sama_3414	0.21	+0.4
4,040,804	-		Sama_3414	0.21	+0.4
4,040,840	+		Sama_3414	0.23	-0.2
4,040,840	+		Sama_3414	0.23	+0.1
4,040,896	+		Sama_3414	0.26	+0.1
4,040,896	+		Sama_3414	0.26	+0.6
4,040,896	+		Sama_3414	0.26	-0.8
4,040,897	-		Sama_3414	0.26	-1.1
4,040,897	-		Sama_3414	0.26	-0.0
4,040,897	-		Sama_3414	0.26	+0.4
4,040,897	-		Sama_3414	0.26	+0.7
4,041,004	+		Sama_3414	0.31	+0.1
4,041,004	+		Sama_3414	0.31	-0.4
4,041,005	-		Sama_3414	0.31	+1.4
4,041,005	-		Sama_3414	0.31	-0.1
4,041,087	+		Sama_3414	0.35	-0.0
4,041,087	+		Sama_3414	0.35	+0.1
4,041,123	+		Sama_3414	0.37	+0.8
4,041,124	-		Sama_3414	0.37	-0.7
4,041,130	+		Sama_3414	0.37	+0.9
4,041,131	-		Sama_3414	0.37	+0.6
4,041,225	+		Sama_3414	0.42	+0.1
4,041,225	+		Sama_3414	0.42	-1.4
4,041,238	-		Sama_3414	0.42	-2.2
4,041,238	-		Sama_3414	0.42	+0.1
4,041,238	-		Sama_3414	0.42	-0.1
4,041,257	+		Sama_3414	0.43	-0.0
4,041,257	+		Sama_3414	0.43	+0.5
4,041,257	+		Sama_3414	0.43	+1.5
4,041,257	+		Sama_3414	0.43	-1.1
4,041,257	+		Sama_3414	0.43	-0.7
4,041,257	+		Sama_3414	0.43	+0.5
4,041,257	+		Sama_3414	0.43	-0.2
4,041,258	-		Sama_3414	0.43	+0.2
4,041,258	-		Sama_3414	0.43	+0.2
4,041,258	-		Sama_3414	0.43	-0.4
4,041,258	-		Sama_3414	0.43	+1.0
4,041,258	-		Sama_3414	0.43	+0.7
4,041,258	-		Sama_3414	0.43	+1.0
4,041,258	-		Sama_3414	0.43	-1.8
4,041,258	-		Sama_3414	0.43	+0.6
4,041,258	-		Sama_3414	0.43	+0.8
4,041,275	-		Sama_3414	0.44	+0.8
4,041,275	-		Sama_3414	0.44	+0.8
4,041,306	+		Sama_3414	0.46	-0.0
4,041,307	-		Sama_3414	0.46	-0.2
4,041,307	-		Sama_3414	0.46	+1.2
4,041,318	+		Sama_3414	0.46	+0.7
4,041,322	+		Sama_3414	0.46	-0.3
4,041,322	+		Sama_3414	0.46	+1.8
4,041,322	+		Sama_3414	0.46	+0.6
4,041,322	+		Sama_3414	0.46	-0.6
4,041,322	+		Sama_3414	0.46	-0.2
4,041,322	+		Sama_3414	0.46	+0.7
4,041,323	-		Sama_3414	0.47	-0.4
4,041,323	-		Sama_3414	0.47	-0.6
4,041,323	-		Sama_3414	0.47	+1.2
4,041,323	-		Sama_3414	0.47	-0.0
4,041,323	-		Sama_3414	0.47	-0.5
4,041,323	-		Sama_3414	0.47	-0.1
4,041,323	-		Sama_3414	0.47	+0.5
4,041,340	+		Sama_3414	0.47	-0.3
4,041,400	+		Sama_3414	0.50	-0.1
4,041,439	+		Sama_3414	0.52	-0.3
4,041,439	+		Sama_3414	0.52	-0.0
4,041,439	+		Sama_3414	0.52	+0.5
4,041,439	+		Sama_3414	0.52	+0.5
4,041,440	-		Sama_3414	0.52	+1.6
4,041,440	-		Sama_3414	0.52	-0.4
4,041,440	-		Sama_3414	0.52	+1.2
4,041,440	-		Sama_3414	0.52	+0.5
4,041,440	-		Sama_3414	0.52	-0.0
4,041,451	-		Sama_3414	0.53	+1.1
4,041,532	+		Sama_3414	0.57	-0.7
4,041,533	-		Sama_3414	0.57	+0.2
4,041,552	+		Sama_3414	0.58	-1.3
4,041,553	-		Sama_3414	0.58	+0.6
4,041,553	-		Sama_3414	0.58	+0.5
4,041,640	+		Sama_3414	0.62	+0.4
4,041,640	+		Sama_3414	0.62	-0.6
4,041,641	-		Sama_3414	0.62	-0.9
4,041,641	-		Sama_3414	0.62	-0.8
4,041,641	-		Sama_3414	0.62	+0.2
4,041,641	-		Sama_3414	0.62	+0.5
4,041,719	-		Sama_3414	0.66	-1.0
4,041,775	-		Sama_3414	0.69	-0.7
4,041,844	+		Sama_3414	0.72	-3.0
4,041,844	+		Sama_3414	0.72	+0.3
4,041,844	+		Sama_3414	0.72	-0.7
4,041,845	-		Sama_3414	0.72	+0.5
4,041,845	-		Sama_3414	0.72	+0.7
4,041,845	-		Sama_3414	0.72	+0.4
4,041,853	+		Sama_3414	0.73	+0.2
4,041,853	+		Sama_3414	0.73	-0.1
4,041,853	+		Sama_3414	0.73	+1.2
4,041,853	+		Sama_3414	0.73	-0.4
4,041,854	-		Sama_3414	0.73	+0.8
4,041,854	-		Sama_3414	0.73	+0.8
4,041,854	-		Sama_3414	0.73	-0.0
4,041,863	+		Sama_3414	0.73	-0.2
4,041,863	+		Sama_3414	0.73	+1.3
4,041,864	-		Sama_3414	0.73	-0.6
4,041,864	-		Sama_3414	0.73	+0.6
4,041,864	-		Sama_3414	0.73	-0.5
4,041,864	-		Sama_3414	0.73	-0.1
4,041,995	+		Sama_3414	0.80	+1.2
4,041,996	-		Sama_3414	0.80	-0.3
4,042,057	+		Sama_3414	0.83	+0.0
4,042,057	+		Sama_3414	0.83	-0.2
4,042,057	+		Sama_3414	0.83	+0.2
4,042,057	+		Sama_3414	0.83	-0.2
4,042,057	+		Sama_3414	0.83	-0.7
4,042,058	-		Sama_3414	0.83	-0.3
4,042,058	-		Sama_3414	0.83	+0.0
4,042,089	+		Sama_3414	0.84	-0.6
4,042,089	+		Sama_3414	0.84	-0.3
4,042,141	-		Sama_3414	0.87	+0.1
4,042,141	-		Sama_3414	0.87	+0.8
4,042,141	-		Sama_3414	0.87	+0.8
4,042,219	+				-0.6
4,042,219	+				+0.3
4,042,219	+				-0.4
4,042,219	+				+0.2
4,042,219	+				+0.1
4,042,219	+				-0.7
4,042,220	-				+0.5
4,042,220	-				-0.7
4,042,220	-				+3.6
4,042,220	-				+0.6
4,042,220	-				-0.7
4,042,220	-				+0.5
4,042,277	+				-0.3
4,042,278	-				+1.1
4,042,306	+				-0.1
4,042,307	-				+0.6
4,042,307	-				+0.3
4,042,307	-				+0.2
4,042,309	-				-0.7
4,042,320	+				-0.0
4,042,321	-				-0.3
4,042,354	+				+0.1
4,042,354	+				-0.2
4,042,354	+				+0.3
4,042,354	+				+0.6
4,042,354	+				-0.0
4,042,354	+				+1.7
4,042,355	-				+0.7
4,042,355	-				-0.1
4,042,361	+				-0.3
4,042,361	+				-0.1
4,042,361	+				+0.4
4,042,361	+				-0.3
4,042,361	+				+0.9
4,042,361	+				+0.2
4,042,400	+				-0.6
4,042,400	+				-0.2
4,042,401	-				+0.3
4,042,445	+				-0.0
4,042,445	+				-0.7
4,042,446	-				-0.4
4,042,453	+				-1.7
4,042,454	-				-0.0
4,042,464	-				-3.2
4,042,485	+				-1.0
4,042,485	+				-2.0
4,042,486	-				-0.2
4,042,486	-				-1.3
4,042,486	-				-0.7
4,042,486	-				-0.2
4,042,512	+				-1.9
4,042,512	+				-2.2
4,042,512	+				-1.1
4,042,513	-				-0.6
4,042,513	-				-1.6
4,042,516	+				-0.3
4,042,517	-				-1.2
4,042,517	-				-0.7
4,042,543	+				-1.6
4,042,543	+				-1.0
4,042,544	-				-1.9
4,042,627	-				-1.8
4,042,672	+		Sama_3415	0.12	-1.1
4,042,673	-		Sama_3415	0.12	-0.5
4,042,673	-		Sama_3415	0.12	-0.4
4,042,702	-		Sama_3415	0.13	+1.0
4,042,721	+		Sama_3415	0.14	+0.4
4,042,721	+		Sama_3415	0.14	-1.6
4,042,722	-		Sama_3415	0.14	-0.3
4,042,801	-		Sama_3415	0.19	-1.7
4,042,816	+		Sama_3415	0.20	-1.3
4,042,816	+		Sama_3415	0.20	-2.3
4,042,816	+		Sama_3415	0.20	-0.6
4,042,816	+		Sama_3415	0.20	-2.0
4,042,817	-		Sama_3415	0.20	-1.1
4,042,817	-		Sama_3415	0.20	-2.2
4,042,817	-		Sama_3415	0.20	+0.4
4,042,827	+		Sama_3415	0.20	-1.7
4,042,827	+		Sama_3415	0.20	-1.2
4,042,828	-		Sama_3415	0.20	-2.1
4,042,853	+		Sama_3415	0.22	-0.9
4,042,853	+		Sama_3415	0.22	+0.4
4,042,853	+		Sama_3415	0.22	-1.5
4,042,854	-		Sama_3415	0.22	-1.3
4,042,854	-		Sama_3415	0.22	-0.7
4,042,854	-		Sama_3415	0.22	-1.4
4,042,854	-		Sama_3415	0.22	-2.2
4,042,854	-		Sama_3415	0.22	-0.3
4,042,854	-		Sama_3415	0.22	-0.6
4,042,854	-		Sama_3415	0.22	-0.6
4,042,854	-		Sama_3415	0.22	-1.1
4,042,854	-		Sama_3415	0.22	-2.8
4,042,854	-		Sama_3415	0.22	-1.2
4,042,854	-		Sama_3415	0.22	-2.4
4,042,862	+		Sama_3415	0.22	-1.4
4,042,863	-		Sama_3415	0.22	-2.3
4,042,881	-		Sama_3415	0.23	-0.5
4,042,911	+		Sama_3415	0.25	-0.7
4,042,912	-		Sama_3415	0.25	-0.9
4,042,912	-		Sama_3415	0.25	-0.0
4,042,912	-		Sama_3415	0.25	-1.2
4,042,951	-		Sama_3415	0.27	-1.0
4,043,078	+		Sama_3415	0.34	-1.7
4,043,079	-		Sama_3415	0.34	-1.7
4,043,079	-		Sama_3415	0.34	-0.9
4,043,117	-		Sama_3415	0.36	-1.7
4,043,117	-		Sama_3415	0.36	-1.0
4,043,145	-		Sama_3415	0.38	-2.2
4,043,145	-		Sama_3415	0.38	-1.3
4,043,175	+		Sama_3415	0.39	-1.4
4,043,175	+		Sama_3415	0.39	-0.9
4,043,176	-		Sama_3415	0.39	-1.0
4,043,236	+		Sama_3415	0.43	-0.0
4,043,257	+		Sama_3415	0.44	-1.1
4,043,258	-		Sama_3415	0.44	+0.3
4,043,258	-		Sama_3415	0.44	-3.0
4,043,289	+		Sama_3415	0.46	-2.8
4,043,303	+		Sama_3415	0.46	-1.7
4,043,303	+		Sama_3415	0.46	-1.9
4,043,304	-		Sama_3415	0.46	-2.1
4,043,304	-		Sama_3415	0.46	-1.3
4,043,304	-		Sama_3415	0.46	-0.5
4,043,304	-		Sama_3415	0.46	-2.5
4,043,304	-		Sama_3415	0.46	-1.6
4,043,307	+		Sama_3415	0.47	-0.9
4,043,307	+		Sama_3415	0.47	-0.9
4,043,307	+		Sama_3415	0.47	-1.3
4,043,307	+		Sama_3415	0.47	-1.2
4,043,308	-		Sama_3415	0.47	-1.0
4,043,308	-		Sama_3415	0.47	-0.4
4,043,308	-		Sama_3415	0.47	-1.1
4,043,308	-		Sama_3415	0.47	-1.7
4,043,334	+		Sama_3415	0.48	-0.6
4,043,334	+		Sama_3415	0.48	-2.9
4,043,335	-		Sama_3415	0.48	-2.4
4,043,338	+		Sama_3415	0.48	-2.5
4,043,400	+		Sama_3415	0.52	-0.6
4,043,401	-		Sama_3415	0.52	-2.1
4,043,401	-		Sama_3415	0.52	-2.0