Strain Fitness in Shewanella amazonensis SB2B around Sama_3267

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
3,879,677	-				+0.3
3,879,714	+				+1.1
3,879,714	+				-0.5
3,879,714	+				+0.5
3,879,714	+				+0.9
3,879,715	-				-0.3
3,879,715	-				+1.5
3,879,715	-				+0.4
3,879,715	-				-0.0
3,879,731	+				+2.0
3,879,731	+				+0.6
3,879,732	-				-2.5
3,879,774	+				+0.8
3,879,798	+				+0.9
3,879,811	+				+0.6
3,879,811	+				-0.7
3,879,812	-				+0.3
3,879,812	-				-0.9
3,879,820	+				+0.2
3,879,820	+				+0.3
3,879,820	+				+0.7
3,879,820	+				+0.8
3,879,932	+		Sama_3267	0.21	+1.0
3,879,932	+		Sama_3267	0.21	+0.2
3,879,932	+		Sama_3267	0.21	-0.2
3,879,933	-		Sama_3267	0.21	-2.2
3,879,933	-		Sama_3267	0.21	-1.2
3,880,024	+		Sama_3267	0.37	+1.6
3,880,025	-		Sama_3267	0.38	+0.5
3,880,118	+		Sama_3267	0.54	+0.2
3,880,118	+		Sama_3267	0.54	+1.8
3,880,118	+		Sama_3267	0.54	+1.1
3,880,118	+		Sama_3267	0.54	+2.0
3,880,118	+		Sama_3267	0.54	+0.6
3,880,191	+		Sama_3267	0.67	+2.4
3,880,191	+		Sama_3267	0.67	+1.7
3,880,338	+				-0.4
3,880,338	+				-0.2
3,880,338	+				+0.2
3,880,338	+				-0.8
3,880,338	+				+0.3
3,880,377	-				-0.5
3,880,389	+				+0.4
3,880,390	-				-0.9
3,880,390	-				-0.8
3,880,426	+				-0.0
3,880,427	-				-1.4
3,880,427	-				-1.3
3,880,460	+				-0.7
3,880,460	+				-2.5
3,880,460	+				-0.9
3,880,472	-				+0.7
3,880,502	+				-0.1
3,880,502	+				+1.7
3,880,503	-				-1.5
3,880,640	+		Sama_3268	0.22	-0.5
3,880,641	-		Sama_3268	0.22	-0.1
3,880,665	-		Sama_3268	0.24	-1.5
3,880,697	+		Sama_3268	0.27	+0.2
3,880,720	+		Sama_3268	0.29	+0.2
3,880,720	+		Sama_3268	0.29	-0.1
3,880,720	+		Sama_3268	0.29	-0.7
3,880,721	-		Sama_3268	0.29	+1.5
3,880,721	-		Sama_3268	0.29	-0.7
3,880,782	+		Sama_3268	0.35	+0.9
3,880,782	+		Sama_3268	0.35	-0.7
3,880,782	+		Sama_3268	0.35	-0.8
3,880,783	-		Sama_3268	0.35	+1.3
3,880,783	-		Sama_3268	0.35	+1.1
3,880,833	+		Sama_3268	0.39	+0.3
3,880,833	+		Sama_3268	0.39	+0.0
3,880,833	+		Sama_3268	0.39	+0.3
3,880,834	-		Sama_3268	0.39	-0.0
3,880,834	-		Sama_3268	0.39	+0.0
3,880,834	-		Sama_3268	0.39	-0.1
3,880,834	-		Sama_3268	0.39	-0.5
3,880,834	-		Sama_3268	0.39	-0.7
3,880,834	-		Sama_3268	0.39	-0.4
3,880,834	-		Sama_3268	0.39	-0.3
3,880,876	+		Sama_3268	0.43	+0.7
3,880,876	+		Sama_3268	0.43	-0.1
3,880,876	+		Sama_3268	0.43	-1.0
3,880,876	+		Sama_3268	0.43	-0.2
3,880,876	+		Sama_3268	0.43	+0.5
3,880,876	+		Sama_3268	0.43	-1.2
3,880,876	+		Sama_3268	0.43	+0.1
3,880,876	+		Sama_3268	0.43	-0.7
3,880,877	-		Sama_3268	0.43	+0.9
3,880,877	-		Sama_3268	0.43	-0.1
3,880,877	-		Sama_3268	0.43	-0.2
3,880,877	-		Sama_3268	0.43	-1.2
3,880,877	-		Sama_3268	0.43	-1.0
3,880,877	-		Sama_3268	0.43	-0.5
3,880,877	-		Sama_3268	0.43	-0.7
3,880,877	-		Sama_3268	0.43	+0.5
3,880,944	+		Sama_3268	0.49	+0.0
3,880,945	-		Sama_3268	0.49	-0.4
3,880,945	-		Sama_3268	0.49	-0.7
3,880,945	-		Sama_3268	0.49	-2.9
3,880,966	+		Sama_3268	0.51	+0.5
3,880,966	+		Sama_3268	0.51	-1.7
3,880,966	+		Sama_3268	0.51	-1.7
3,880,967	-		Sama_3268	0.51	-0.6
3,880,967	-		Sama_3268	0.51	-0.5
3,880,967	-		Sama_3268	0.51	-1.4
3,880,967	-		Sama_3268	0.51	-2.1
3,880,967	-		Sama_3268	0.51	-0.6
3,880,967	-		Sama_3268	0.51	+0.6
3,880,967	-		Sama_3268	0.51	-0.2
3,881,026	+		Sama_3268	0.56	-1.7
3,881,027	-		Sama_3268	0.56	+1.2
3,881,061	+		Sama_3268	0.60	-0.9
3,881,061	+		Sama_3268	0.60	-0.3
3,881,061	+		Sama_3268	0.60	-0.2
3,881,061	+		Sama_3268	0.60	-0.9
3,881,061	+		Sama_3268	0.60	-0.4
3,881,061	+		Sama_3268	0.60	+0.1
3,881,061	+		Sama_3268	0.60	+0.8
3,881,061	+		Sama_3268	0.60	-0.2
3,881,061	+		Sama_3268	0.60	-1.2
3,881,061	+		Sama_3268	0.60	-1.7
3,881,061	+		Sama_3268	0.60	-0.6
3,881,062	-		Sama_3268	0.60	+0.1
3,881,062	-		Sama_3268	0.60	-1.0
3,881,062	-		Sama_3268	0.60	+0.1
3,881,062	-		Sama_3268	0.60	+0.9
3,881,062	-		Sama_3268	0.60	-2.0
3,881,062	-		Sama_3268	0.60	-2.4
3,881,062	-		Sama_3268	0.60	-0.7
3,881,062	-		Sama_3268	0.60	-0.9
3,881,074	-		Sama_3268	0.61	+0.0
3,881,128	-		Sama_3268	0.66	-0.7
3,881,128	-		Sama_3268	0.66	-0.3
3,881,193	-		Sama_3268	0.71	+0.1
3,881,193	-		Sama_3268	0.71	+0.0
3,881,193	-		Sama_3268	0.71	+0.2
3,881,193	-		Sama_3268	0.71	+0.4
3,881,193	-		Sama_3268	0.71	-1.1
3,881,223	-		Sama_3268	0.74	-1.4
3,881,262	-		Sama_3268	0.77	-0.1
3,881,274	+		Sama_3268	0.79	-0.8
3,881,274	+		Sama_3268	0.79	+1.0
3,881,275	-		Sama_3268	0.79	-1.2
3,881,275	-		Sama_3268	0.79	-0.8
3,881,290	-		Sama_3268	0.80	-0.1
3,881,329	+		Sama_3268	0.83	-1.2
3,881,330	-		Sama_3268	0.84	-1.7
3,881,357	-		Sama_3268	0.86	-0.9