Strain Fitness in Shewanella amazonensis SB2B around Sama_R0126

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
3,873,851	-		Sama_3264	0.82	+0.8
3,873,852	+		Sama_3264	0.82	-0.8
3,873,852	+		Sama_3264	0.82	-0.1
3,873,852	+		Sama_3264	0.82	-0.5
3,873,853	-		Sama_3264	0.82	-0.2
3,873,869	+		Sama_3264	0.83	+3.7
3,873,869	+		Sama_3264	0.83	+0.2
3,873,869	+		Sama_3264	0.83	+0.3
3,873,869	+		Sama_3264	0.83	+0.9
3,873,870	-		Sama_3264	0.83	-0.6
3,873,874	+		Sama_3264	0.83	+0.3
3,873,934	+		Sama_3264	0.86	+0.1
3,873,937	-		Sama_3264	0.86	+0.6
3,873,971	+		Sama_3264	0.88	-0.1
3,873,995	+		Sama_3264	0.89	-0.1
3,873,995	+		Sama_3264	0.89	-0.2
3,873,995	+		Sama_3264	0.89	+0.7
3,873,995	+		Sama_3264	0.89	-0.1
3,873,995	+		Sama_3264	0.89	-0.5
3,873,995	+		Sama_3264	0.89	-0.8
3,873,995	+		Sama_3264	0.89	+0.4
3,873,995	+		Sama_3264	0.89	-1.0
3,873,996	-		Sama_3264	0.89	+0.6
3,873,996	-		Sama_3264	0.89	-0.4
3,873,996	-		Sama_3264	0.89	-0.1
3,873,996	-		Sama_3264	0.89	-0.1
3,873,996	-		Sama_3264	0.89	-0.2
3,873,996	-		Sama_3264	0.89	-0.9
3,873,996	-		Sama_3264	0.89	+0.3
3,873,996	-		Sama_3264	0.89	+0.1
3,874,022	+				-2.2
3,874,022	+				+0.5
3,874,022	+				-0.6
3,874,022	+				+0.6
3,874,022	+				-0.2
3,874,023	-				+0.8
3,874,023	-				+0.2
3,874,023	-				+1.7
3,874,025	+				+1.0
3,874,025	+				+0.2
3,874,025	+				+0.3
3,874,025	+				+0.3
3,874,025	+				-0.4
3,874,025	+				-0.9
3,874,025	+				+0.7
3,874,026	-				-0.5
3,874,075	-				+1.3
3,874,075	-				-0.1
3,874,141	+				-0.2
3,874,142	-				-1.1
3,874,163	+				-1.1
3,874,163	+				-0.7
3,874,163	+				-1.1
3,874,163	+				-0.9
3,874,164	-				-0.5
3,874,164	-				-0.1
3,874,164	-				+0.6
3,874,164	-				+0.8
3,874,164	-				+0.3
3,874,164	-				+0.4
3,874,174	+				+0.4
3,874,175	-				-0.4
3,874,175	-				+0.2
3,874,194	+				-0.7
3,874,194	+				+0.5
3,874,194	+				+1.1
3,874,194	+				+1.2
3,874,194	+				+0.0
3,874,195	-				-0.1
3,874,195	-				+0.6
3,874,195	-				-0.8
3,874,251	+				-0.8
3,874,252	-				-0.1
3,874,353	+				+0.5
3,874,365	+				-0.1
3,874,368	+				-0.4
3,874,368	+				-1.7
3,874,368	+				-0.7
3,874,369	-				+0.4
3,874,369	-				+0.1
3,874,369	-				+0.2
3,874,369	-				-1.9
3,874,369	-				-0.5
3,874,369	-				-0.2
3,874,369	-				+0.5
3,874,369	-				-0.5
3,874,561	-		Sama_R0124	0.14	-0.2
3,874,561	-		Sama_R0124	0.14	+0.7
3,874,753	-				+0.2
3,874,949	+				+1.0
3,874,949	+				+1.3
3,874,949	+				+0.0
3,874,950	-				+0.4
3,874,950	-				-0.7
3,874,950	-				-0.1
3,874,997	+				-0.8
3,874,997	+				+0.9
3,874,997	+				-0.6
3,874,997	+				-0.4
3,874,997	+				+0.2
3,874,997	+				+0.6
3,874,998	-				+0.1
3,874,998	-				+0.1
3,874,998	-				-0.9
3,874,998	-				-1.1
3,874,998	-				+0.5
3,874,998	-				-0.3
3,874,998	-				-0.1
3,874,998	-				+0.6
3,874,998	-				+0.3
3,874,998	-				+0.2
3,875,011	-				+0.4
3,875,022	+				+0.9
3,875,027	-				+0.1
3,875,030	-				-0.7
3,875,035	+				-0.3
3,875,035	+				+1.9
3,875,035	+				+0.0
3,875,036	-				-0.8
3,875,036	-				+0.7
3,875,053	+				-0.3
3,875,053	+				-0.8
3,875,054	-				+0.1
3,875,054	-				-0.1
3,875,054	-				-0.3
3,875,054	-				+1.1
3,875,054	-				+0.9
3,875,054	-				-0.3
3,875,059	+				+0.2
3,875,060	-				-0.9
3,875,074	+				+0.4
3,875,074	+				+0.2
3,875,075	-				+0.9
3,875,075	-				+0.0
3,875,118	+				+0.0
3,875,159	+				-1.7
3,875,159	+				+1.2
3,875,159	+				+0.4
3,875,159	+				+0.1
3,875,160	-				+0.3
3,875,160	-				+0.6
3,875,160	-				+0.5
3,875,160	-				+1.1
3,875,160	-				+0.1
3,875,160	-				+0.4
3,875,161	+				+0.2
3,875,161	+				+2.2
3,875,161	+				-0.0
3,875,161	+				+0.9
3,875,162	-				+0.8
3,875,162	-				+0.6
3,875,194	-				+0.9
3,875,194	-				+0.6
3,875,200	+				-1.4
3,875,200	+				-2.2
3,875,200	+				+0.0
3,875,200	+				-1.3
3,875,201	-				+0.2
3,875,240	+				+0.0
3,875,240	+				+0.1
3,875,240	+				-2.4
3,875,240	+				+0.2
3,875,240	+				-0.5
3,875,240	+				+0.2
3,875,240	+				+0.6
3,875,240	+				-0.3
3,875,240	+				+0.6
3,875,241	-				-0.4
3,875,241	-				+0.5
3,875,241	-				+0.6
3,875,241	-				+0.1
3,875,241	-				+0.1
3,875,284	+				+0.6
3,875,284	+				-0.2
3,875,303	+				-0.3
3,875,303	+				+0.2
3,875,303	+				-0.1
3,875,303	+				+0.5
3,875,303	+				+0.1
3,875,303	+				-0.4
3,875,303	+				-0.0
3,875,303	+				-0.4
3,875,303	+				-0.2
3,875,304	-				-0.1
3,875,304	-				+0.4
3,875,304	-				-0.3
3,875,304	-				+0.9
3,875,304	-				+0.2
3,875,304	-				+0.1
3,875,304	-				+1.3
3,875,304	-				+0.2
3,875,305	+				-0.5
3,875,375	+		Sama_3265	0.12	+2.1
3,875,375	+		Sama_3265	0.12	-0.2
3,875,376	-		Sama_3265	0.12	-0.0
3,875,376	-		Sama_3265	0.12	+1.2
3,875,376	-		Sama_3265	0.12	-0.1
3,875,383	+		Sama_3265	0.13	+0.2
3,875,383	+		Sama_3265	0.13	-0.1
3,875,383	+		Sama_3265	0.13	+0.2
3,875,383	+		Sama_3265	0.13	-1.1
3,875,383	+		Sama_3265	0.13	+0.1
3,875,391	+		Sama_3265	0.13	+0.1
3,875,391	+		Sama_3265	0.13	+0.1
3,875,391	+		Sama_3265	0.13	+0.3
3,875,391	+		Sama_3265	0.13	-0.3
3,875,391	+		Sama_3265	0.13	+0.3
3,875,391	+		Sama_3265	0.13	-0.6
3,875,391	+		Sama_3265	0.13	+0.7
3,875,391	+		Sama_3265	0.13	+0.6
3,875,391	+		Sama_3265	0.13	+0.3
3,875,391	+		Sama_3265	0.13	+1.3
3,875,391	+		Sama_3265	0.13	-0.9
3,875,391	+		Sama_3265	0.13	+0.1
3,875,391	+		Sama_3265	0.13	+0.7
3,875,391	+		Sama_3265	0.13	-2.3
3,875,391	+		Sama_3265	0.13	+0.1
3,875,391	+		Sama_3265	0.13	+0.0
3,875,391	+		Sama_3265	0.13	-1.4
3,875,391	+		Sama_3265	0.13	+1.1
3,875,391	+		Sama_3265	0.13	+0.2
3,875,391	+		Sama_3265	0.13	-1.4
3,875,391	+		Sama_3265	0.13	+1.0
3,875,391	+		Sama_3265	0.13	-0.4
3,875,391	+		Sama_3265	0.13	-0.5
3,875,391	+		Sama_3265	0.13	+0.2
3,875,391	+		Sama_3265	0.13	+0.9
3,875,391	+		Sama_3265	0.13	+0.2
3,875,391	+		Sama_3265	0.13	+0.2
3,875,391	+		Sama_3265	0.13	+0.8
3,875,392	-		Sama_3265	0.13	-0.8
3,875,392	-		Sama_3265	0.13	+0.7
3,875,392	-		Sama_3265	0.13	-0.4
3,875,392	-		Sama_3265	0.13	+2.1
3,875,392	-		Sama_3265	0.13	+0.5
3,875,392	-		Sama_3265	0.13	+0.4
3,875,392	-		Sama_3265	0.13	+0.6
3,875,392	-		Sama_3265	0.13	-0.7
3,875,392	-		Sama_3265	0.13	-0.1
3,875,392	-		Sama_3265	0.13	-0.5
3,875,392	-		Sama_3265	0.13	-0.2
3,875,400	+		Sama_3265	0.13	-0.1
3,875,400	+		Sama_3265	0.13	-2.1
3,875,400	+		Sama_3265	0.13	-1.0
3,875,400	+		Sama_3265	0.13	-0.5
3,875,400	+		Sama_3265	0.13	+0.9
3,875,400	+		Sama_3265	0.13	-0.7
3,875,400	+		Sama_3265	0.13	+0.0
3,875,400	+		Sama_3265	0.13	+0.2
3,875,400	+		Sama_3265	0.13	+1.2
3,875,401	-		Sama_3265	0.13	-1.1
3,875,401	-		Sama_3265	0.13	-1.5
3,875,401	-		Sama_3265	0.13	+0.2
3,875,401	-		Sama_3265	0.13	-0.2
3,875,401	-		Sama_3265	0.13	-0.7
3,875,401	-		Sama_3265	0.13	+0.8
3,875,401	-		Sama_3265	0.13	+1.6
3,875,423	+		Sama_3265	0.14	-0.4
3,875,423	+		Sama_3265	0.14	+1.1
3,875,423	+		Sama_3265	0.14	+0.8
3,875,423	+		Sama_3265	0.14	-0.4
3,875,423	+		Sama_3265	0.14	+0.2
3,875,424	-		Sama_3265	0.14	+0.4
3,875,424	-		Sama_3265	0.14	+0.0
3,875,424	-		Sama_3265	0.14	-0.7
3,875,424	-		Sama_3265	0.14	-1.2
3,875,424	-		Sama_3265	0.14	+0.2
3,875,424	-		Sama_3265	0.14	+0.2
3,875,424	-		Sama_3265	0.14	+2.5
3,875,427	+		Sama_3265	0.14	+0.3
3,875,427	+		Sama_3265	0.14	+0.1
3,875,427	+		Sama_3265	0.14	+0.7
3,875,428	-		Sama_3265	0.14	+0.3
3,875,428	-		Sama_3265	0.14	+0.1
3,875,428	-		Sama_3265	0.14	+0.2
3,875,428	-		Sama_3265	0.14	-0.3
3,875,505	+		Sama_3265	0.17	+0.9
3,875,505	+		Sama_3265	0.17	-0.1
3,875,506	-		Sama_3265	0.17	-0.2
3,875,547	-		Sama_3265	0.19	-0.4
3,875,572	-		Sama_3265	0.20	+0.7
3,875,586	-		Sama_3265	0.21	-0.8
3,875,586	-		Sama_3265	0.21	-0.3
3,875,586	-		Sama_3265	0.21	+0.3
3,875,619	+		Sama_3265	0.22	+0.4
3,875,620	-		Sama_3265	0.22	+0.8
3,875,635	+		Sama_3265	0.22	+0.3
3,875,636	-		Sama_3265	0.22	-0.0
3,875,647	+		Sama_3265	0.23	+0.2
3,875,647	+		Sama_3265	0.23	+0.0
3,875,647	+		Sama_3265	0.23	+0.7
3,875,648	-		Sama_3265	0.23	+0.2
3,875,648	-		Sama_3265	0.23	+0.1
3,875,648	-		Sama_3265	0.23	+0.7
3,875,648	-		Sama_3265	0.23	+1.4
3,875,648	-		Sama_3265	0.23	-0.1
3,875,670	+		Sama_3265	0.24	+0.5
3,875,670	+		Sama_3265	0.24	-0.1
3,875,671	-		Sama_3265	0.24	+0.6
3,875,671	-		Sama_3265	0.24	-0.8
3,875,671	-		Sama_3265	0.24	-0.4
3,875,688	+		Sama_3265	0.24	-0.7
3,875,688	+		Sama_3265	0.24	-0.4
3,875,688	+		Sama_3265	0.24	-0.1
3,875,689	-		Sama_3265	0.25	+0.8
3,875,689	-		Sama_3265	0.25	-0.2
3,875,713	+		Sama_3265	0.25	-0.3
3,875,713	+		Sama_3265	0.25	-0.3
3,875,713	+		Sama_3265	0.25	+0.9
3,875,713	+		Sama_3265	0.25	-0.0
3,875,714	-		Sama_3265	0.25	+0.9
3,875,733	-		Sama_3265	0.26	+0.4
3,875,756	+		Sama_3265	0.27	+0.2
3,875,756	+		Sama_3265	0.27	+0.1
3,875,757	-		Sama_3265	0.27	-0.1
3,875,757	-		Sama_3265	0.27	-0.2
3,875,757	-		Sama_3265	0.27	-0.8
3,875,757	-		Sama_3265	0.27	+1.1